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I-TASSER and QUARK decoys for CASP11 targets

This page includes structural decoys generated by I-TASSER and QUARK servers during CASP11, for the proteins that the I-TASSER server deemed to be of a single domain. The multi-domain targets were ignored due to the ambiguity of domain splitting that could render the decoys meaningless. The decoys have been made available to the wefold groups during CASP11. As an unsolved problem, it has been extremely challenging to select (or refine) the best models from the decoy structures that are closest to the experimental structures.

[CASP8 Decoys] [CASP9 Decoys] [CASP10 Decoys] [CASP11 Decoys] [Decoy Hompage]

Target ID #decoys Length Type Native Sequence Zhang-Server_model1 (TM-score) QUARK_model1 (TM-score) Decoys (Best TM-score)
T0759 750 109 Easy native.pdb seq.txt Zhang-Server_model1.pdb (0.356) QUARK_model1.pdb (0.347) T0759.tar.bz2 (0.427)
T0762 750 280 Trivial native.pdb seq.txt Zhang-Server_model1.pdb (0.925) QUARK_model1.pdb (0.922) T0762.tar.bz2 (0.931)
T0763 1550 163 Very Hard native.pdb seq.txt Zhang-Server_model1.pdb (0.198) QUARK_model1.pdb (0.194) T0763.tar.bz2 (0.311)
T0764 450 341 Trivial native.pdb seq.txt Zhang-Server_model1.pdb (0.885) QUARK_model1.pdb (0.885) T0764.tar.bz2 (0.888)
T0765 1550 128 Hard native.pdb seq.txt Zhang-Server_model1.pdb (0.761) QUARK_model1.pdb (0.750) T0765.tar.bz2 (0.785)
T0766 750 130 Trivial native.pdb seq.txt Zhang-Server_model1.pdb (0.935) QUARK_model1.pdb (0.937) T0766.tar.bz2 (0.954)
T0768 750 170 Easy native.pdb seq.txt Zhang-Server_model1.pdb (0.626) QUARK_model1.pdb (0.624) T0768.tar.bz2 (0.865)
T0769 750 112 Easy native.pdb seq.txt Zhang-Server_model1.pdb (0.741) QUARK_model1.pdb (0.708) T0769.tar.bz2 (0.782)
T0773 1550 77 Hard native.pdb seq.txt Zhang-Server_model1.pdb (0.812) QUARK_model1.pdb (0.778) T0773.tar.bz2 (0.828)
T0778 690 127 Trivial native.pdb seq.txt Zhang-Server_model1.pdb (0.929) QUARK_model1.pdb (0.964) T0778.tar.bz2 (0.965)
T0779 1250 68 Hard seq.txt Zhang-Server_model1.pdb QUARK_model1.pdb T0779.tar.bz2
T0782 750 135 Easy native.pdb seq.txt Zhang-Server_model1.pdb (0.687) QUARK_model1.pdb (0.660) T0782.tar.bz2 (0.729)
T0784 750 155 Trivial native.pdb seq.txt Zhang-Server_model1.pdb (0.937) QUARK_model1.pdb (0.944) T0784.tar.bz2 (0.949)
T0785 1550 115 Very Hard native.pdb seq.txt Zhang-Server_model1.pdb (0.261) QUARK_model1.pdb (0.228) T0785.tar.bz2 (0.309)
T0786 750 264 Trivial native.pdb seq.txt Zhang-Server_model1.pdb (0.782) QUARK_model1.pdb (0.777) T0786.tar.bz2 (0.800)
T0787 750 153 Easy native.pdb seq.txt Zhang-Server_model1.pdb (0.235) QUARK_model1.pdb (0.220) T0787.tar.bz2 (0.257)
T0788 450 481 Trivial native.pdb seq.txt Zhang-Server_model1.pdb (0.897) QUARK_model1.pdb (0.900) T0788.tar.bz2 (0.903)
T0792 750 80 Easy native.pdb seq.txt Zhang-Server_model1.pdb (0.672) QUARK_model1.pdb (0.686) T0792.tar.bz2 (0.704)
T0795 710 141 Easy seq.txt Zhang-Server_model1.pdb QUARK_model1.pdb T0795.tar.bz2
T0796 450 309 Easy native.pdb seq.txt Zhang-Server_model1.pdb (0.666) QUARK_model1.pdb (0.658) T0796.tar.bz2 (0.715)
T0797 540 44 Easy native.pdb seq.txt Zhang-Server_model1.pdb (0.826) QUARK_model1.pdb (0.772) T0797.tar.bz2 (0.948)
T0798 720 198 Trivial native.pdb seq.txt Zhang-Server_model1.pdb (0.937) QUARK_model1.pdb (0.932) T0798.tar.bz2 (0.955)
T0800 750 247 Easy native.pdb seq.txt Zhang-Server_model1.pdb (0.575) QUARK_model1.pdb (0.558) T0800.tar.bz2 (0.602)
T0801 170 376 Trivial native.pdb seq.txt Zhang-Server_model1.pdb (0.926) QUARK_model1.pdb (0.924) T0801.tar.bz2 (0.943)
T0802 1550 122 Hard seq.txt Zhang-Server_model1.pdb QUARK_model1.pdb T0802.tar.bz2
T0803 750 139 Easy native.pdb seq.txt Zhang-Server_model1.pdb (0.467) QUARK_model1.pdb (0.466) T0803.tar.bz2 (0.524)
T0804 1550 202 Hard seq.txt Zhang-Server_model1.pdb QUARK_model1.pdb T0804.tar.bz2
T0805 750 214 Trivial native.pdb seq.txt Zhang-Server_model1.pdb (0.843) QUARK_model1.pdb (0.826) T0805.tar.bz2 (0.858)
T0807 680 284 Trivial native.pdb seq.txt Zhang-Server_model1.pdb (0.913) QUARK_model1.pdb (0.898) T0807.tar.bz2 (0.922)
T0809 700 62 Easy seq.txt Zhang-Server_model1.pdb QUARK_model1.pdb T0809.tar.bz2
T0811 270 255 Trivial native.pdb seq.txt Zhang-Server_model1.pdb (0.941) QUARK_model1.pdb (0.941) T0811.tar.bz2 (0.956)
T0812 1550 204 Very Hard native.pdb seq.txt Zhang-Server_model1.pdb (0.536) QUARK_model1.pdb (0.538) T0812.tar.bz2 (0.612)
T0813 750 307 Trivial native.pdb seq.txt Zhang-Server_model1.pdb (0.922) QUARK_model1.pdb (0.921) T0813.tar.bz2 (0.925)
T0815 270 106 Trivial native.pdb seq.txt Zhang-Server_model1.pdb (0.885) QUARK_model1.pdb (0.872) T0815.tar.bz2 (0.922)
T0816 1200 68 Hard native.pdb seq.txt Zhang-Server_model1.pdb (0.296) QUARK_model1.pdb (0.565) T0816.tar.bz2 (0.721)
T0817 750 525 Trivial native.pdb seq.txt Zhang-Server_model1.pdb (0.718) QUARK_model1.pdb (0.712) T0817.tar.bz2 (0.917)
T0819 400 373 Trivial native.pdb seq.txt Zhang-Server_model1.pdb (0.920) QUARK_model1.pdb (0.917) T0819.tar.bz2 (0.923)
T0820 1550 140 Very Hard native.pdb seq.txt Zhang-Server_model1.pdb (0.324) QUARK_model1.pdb (0.312) T0820.tar.bz2 (0.395)
T0821 730 275 Easy native.pdb seq.txt Zhang-Server_model1.pdb (0.818) QUARK_model1.pdb (0.842) T0821.tar.bz2 (0.868)
T0822 1550 121 Hard native.pdb seq.txt Zhang-Server_model1.pdb (0.442) QUARK_model1.pdb (0.513) T0822.tar.bz2 (0.539)
T0823 720 296 Trivial native.pdb seq.txt Zhang-Server_model1.pdb (0.779) QUARK_model1.pdb (0.781) T0823.tar.bz2 (0.792)
T0824 1550 110 Hard native.pdb seq.txt Zhang-Server_model1.pdb (0.296) QUARK_model1.pdb (0.301) T0824.tar.bz2 (0.336)
T0825 550 205 Trivial native.pdb seq.txt Zhang-Server_model1.pdb (0.509) QUARK_model1.pdb (0.510) T0825.tar.bz2 (0.513)
T0829 750 70 Easy native.pdb seq.txt Zhang-Server_model1.pdb (0.584) QUARK_model1.pdb (0.609) T0829.tar.bz2 (0.649)
T0833 750 136 Trivial native.pdb seq.txt Zhang-Server_model1.pdb (0.743) QUARK_model1.pdb (0.752) T0833.tar.bz2 (0.776)
T0835 750 424 Easy native.pdb seq.txt Zhang-Server_model1.pdb (0.700) QUARK_model1.pdb (0.693) T0835.tar.bz2 (0.726)
T0836 1550 204 Hard native.pdb seq.txt Zhang-Server_model1.pdb (0.276) QUARK_model1.pdb (0.269) T0836.tar.bz2 (0.448)
T0837 1550 128 Hard native.pdb seq.txt Zhang-Server_model1.pdb (0.427) QUARK_model1.pdb (0.736) T0837.tar.bz2 (0.736)
T0838 1550 154 Hard native.pdb seq.txt Zhang-Server_model1.pdb (0.543) QUARK_model1.pdb (0.539) T0838.tar.bz2 (0.591)
T0839 750 262 Trivial seq.txt Zhang-Server_model1.pdb QUARK_model1.pdb T0839.tar.bz2
T0841 630 253 Trivial native.pdb seq.txt Zhang-Server_model1.pdb (0.926) QUARK_model1.pdb (0.921) T0841.tar.bz2 (0.935)
T0842 1550 146 Hard seq.txt Zhang-Server_model1.pdb QUARK_model1.pdb T0842.tar.bz2
T0843 270 369 Trivial native.pdb seq.txt Zhang-Server_model1.pdb (0.924) QUARK_model1.pdb (0.925) T0843.tar.bz2 (0.938)
T0844 1550 145 Hard seq.txt Zhang-Server_model1.pdb QUARK_model1.pdb T0844.tar.bz2
T0846 1550 146 Hard seq.txt Zhang-Server_model1.pdb QUARK_model1.pdb T0846.tar.bz2
T0847 750 176 Trivial native.pdb seq.txt Zhang-Server_model1.pdb (0.788) QUARK_model1.pdb (0.791) T0847.tar.bz2 (0.803)
T0849 730 240 Trivial native.pdb seq.txt Zhang-Server_model1.pdb (0.730) QUARK_model1.pdb (0.706) T0849.tar.bz2 (0.769)
T0850 1550 190 Very Hard seq.txt Zhang-Server_model1.pdb QUARK_model1.pdb T0850.tar.bz2
T0851 710 456 Trivial native.pdb seq.txt Zhang-Server_model1.pdb (0.782) QUARK_model1.pdb (0.769) T0851.tar.bz2 (0.928)
T0854 700 212 Trivial native.pdb seq.txt Zhang-Server_model1.pdb (0.794) QUARK_model1.pdb (0.791) T0854.tar.bz2 (0.829)
T0855 1550 119 Hard native.pdb seq.txt Zhang-Server_model1.pdb (0.494) QUARK_model1.pdb (0.409) T0855.tar.bz2 (0.629)
T0856 490 159 Trivial native.pdb seq.txt Zhang-Server_model1.pdb (0.869) QUARK_model1.pdb (0.864) T0856.tar.bz2 (0.880)
T0857 1550 105 Hard native.pdb seq.txt Zhang-Server_model1.pdb (0.487) QUARK_model1.pdb (0.504) T0857.tar.bz2 (0.548)
T0858 720 494 Trivial native.pdb seq.txt Zhang-Server_model1.pdb (0.910) QUARK_model1.pdb (0.910) T0858.tar.bz2 (0.924)
average 932 203 (0.688) (0.694) (0.748)


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