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I-TASSER and QUARK decoys for CASP11 targets

This page includes structural decoys generated by I-TASSER and QUARK servers during CASP11, for the proteins that the I-TASSER server deemed to be of a single domain. The multi-domain targets were ignored due to the ambiguity of domain splitting that could render the decoys meaningless. The decoys have been made available to the wefold groups during CASP11. As an unsolved problem, it has been extremely challenging to select (or refine) the best models from the decoy structures that are closest to the experimental structures.

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[CASP8 Decoys] [CASP9 Decoys] [CASP10 Decoys] [CASP11 Decoys] [Decoy Hompage]

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Target ID	#decoys	Length	Type	Native	Sequence	Zhang-Server_model1 (TM-score)	QUARK_model1 (TM-score)	Decoys (Best TM-score)
T0759	750	109	Easy	native.pdb	seq.txt	Zhang-Server_model1.pdb (0.356)	QUARK_model1.pdb (0.347)	T0759.tar.bz2 (0.427)
T0762	750	280	Trivial	native.pdb	seq.txt	Zhang-Server_model1.pdb (0.925)	QUARK_model1.pdb (0.922)	T0762.tar.bz2 (0.931)
T0763	1550	163	Very Hard	native.pdb	seq.txt	Zhang-Server_model1.pdb (0.198)	QUARK_model1.pdb (0.194)	T0763.tar.bz2 (0.311)
T0764	450	341	Trivial	native.pdb	seq.txt	Zhang-Server_model1.pdb (0.885)	QUARK_model1.pdb (0.885)	T0764.tar.bz2 (0.888)
T0765	1550	128	Hard	native.pdb	seq.txt	Zhang-Server_model1.pdb (0.761)	QUARK_model1.pdb (0.750)	T0765.tar.bz2 (0.785)
T0766	750	130	Trivial	native.pdb	seq.txt	Zhang-Server_model1.pdb (0.935)	QUARK_model1.pdb (0.937)	T0766.tar.bz2 (0.954)
T0768	750	170	Easy	native.pdb	seq.txt	Zhang-Server_model1.pdb (0.626)	QUARK_model1.pdb (0.624)	T0768.tar.bz2 (0.865)
T0769	750	112	Easy	native.pdb	seq.txt	Zhang-Server_model1.pdb (0.741)	QUARK_model1.pdb (0.708)	T0769.tar.bz2 (0.782)
T0773	1550	77	Hard	native.pdb	seq.txt	Zhang-Server_model1.pdb (0.812)	QUARK_model1.pdb (0.778)	T0773.tar.bz2 (0.828)
T0778	690	127	Trivial	native.pdb	seq.txt	Zhang-Server_model1.pdb (0.929)	QUARK_model1.pdb (0.964)	T0778.tar.bz2 (0.965)
T0779	1250	68	Hard		seq.txt	Zhang-Server_model1.pdb	QUARK_model1.pdb	T0779.tar.bz2
T0782	750	135	Easy	native.pdb	seq.txt	Zhang-Server_model1.pdb (0.687)	QUARK_model1.pdb (0.660)	T0782.tar.bz2 (0.729)
T0784	750	155	Trivial	native.pdb	seq.txt	Zhang-Server_model1.pdb (0.937)	QUARK_model1.pdb (0.944)	T0784.tar.bz2 (0.949)
T0785	1550	115	Very Hard	native.pdb	seq.txt	Zhang-Server_model1.pdb (0.261)	QUARK_model1.pdb (0.228)	T0785.tar.bz2 (0.309)
T0786	750	264	Trivial	native.pdb	seq.txt	Zhang-Server_model1.pdb (0.782)	QUARK_model1.pdb (0.777)	T0786.tar.bz2 (0.800)
T0787	750	153	Easy	native.pdb	seq.txt	Zhang-Server_model1.pdb (0.235)	QUARK_model1.pdb (0.220)	T0787.tar.bz2 (0.257)
T0788	450	481	Trivial	native.pdb	seq.txt	Zhang-Server_model1.pdb (0.897)	QUARK_model1.pdb (0.900)	T0788.tar.bz2 (0.903)
T0792	750	80	Easy	native.pdb	seq.txt	Zhang-Server_model1.pdb (0.672)	QUARK_model1.pdb (0.686)	T0792.tar.bz2 (0.704)
T0795	710	141	Easy		seq.txt	Zhang-Server_model1.pdb	QUARK_model1.pdb	T0795.tar.bz2
T0796	450	309	Easy	native.pdb	seq.txt	Zhang-Server_model1.pdb (0.666)	QUARK_model1.pdb (0.658)	T0796.tar.bz2 (0.715)
T0797	540	44	Easy	native.pdb	seq.txt	Zhang-Server_model1.pdb (0.826)	QUARK_model1.pdb (0.772)	T0797.tar.bz2 (0.948)
T0798	720	198	Trivial	native.pdb	seq.txt	Zhang-Server_model1.pdb (0.937)	QUARK_model1.pdb (0.932)	T0798.tar.bz2 (0.955)
T0800	750	247	Easy	native.pdb	seq.txt	Zhang-Server_model1.pdb (0.575)	QUARK_model1.pdb (0.558)	T0800.tar.bz2 (0.602)
T0801	170	376	Trivial	native.pdb	seq.txt	Zhang-Server_model1.pdb (0.926)	QUARK_model1.pdb (0.924)	T0801.tar.bz2 (0.943)
T0802	1550	122	Hard		seq.txt	Zhang-Server_model1.pdb	QUARK_model1.pdb	T0802.tar.bz2
T0803	750	139	Easy	native.pdb	seq.txt	Zhang-Server_model1.pdb (0.467)	QUARK_model1.pdb (0.466)	T0803.tar.bz2 (0.524)
T0804	1550	202	Hard		seq.txt	Zhang-Server_model1.pdb	QUARK_model1.pdb	T0804.tar.bz2
T0805	750	214	Trivial	native.pdb	seq.txt	Zhang-Server_model1.pdb (0.843)	QUARK_model1.pdb (0.826)	T0805.tar.bz2 (0.858)
T0807	680	284	Trivial	native.pdb	seq.txt	Zhang-Server_model1.pdb (0.913)	QUARK_model1.pdb (0.898)	T0807.tar.bz2 (0.922)
T0809	700	62	Easy		seq.txt	Zhang-Server_model1.pdb	QUARK_model1.pdb	T0809.tar.bz2
T0811	270	255	Trivial	native.pdb	seq.txt	Zhang-Server_model1.pdb (0.941)	QUARK_model1.pdb (0.941)	T0811.tar.bz2 (0.956)
T0812	1550	204	Very Hard	native.pdb	seq.txt	Zhang-Server_model1.pdb (0.536)	QUARK_model1.pdb (0.538)	T0812.tar.bz2 (0.612)
T0813	750	307	Trivial	native.pdb	seq.txt	Zhang-Server_model1.pdb (0.922)	QUARK_model1.pdb (0.921)	T0813.tar.bz2 (0.925)
T0815	270	106	Trivial	native.pdb	seq.txt	Zhang-Server_model1.pdb (0.885)	QUARK_model1.pdb (0.872)	T0815.tar.bz2 (0.922)
T0816	1200	68	Hard	native.pdb	seq.txt	Zhang-Server_model1.pdb (0.296)	QUARK_model1.pdb (0.565)	T0816.tar.bz2 (0.721)
T0817	750	525	Trivial	native.pdb	seq.txt	Zhang-Server_model1.pdb (0.718)	QUARK_model1.pdb (0.712)	T0817.tar.bz2 (0.917)
T0819	400	373	Trivial	native.pdb	seq.txt	Zhang-Server_model1.pdb (0.920)	QUARK_model1.pdb (0.917)	T0819.tar.bz2 (0.923)
T0820	1550	140	Very Hard	native.pdb	seq.txt	Zhang-Server_model1.pdb (0.324)	QUARK_model1.pdb (0.312)	T0820.tar.bz2 (0.395)
T0821	730	275	Easy	native.pdb	seq.txt	Zhang-Server_model1.pdb (0.818)	QUARK_model1.pdb (0.842)	T0821.tar.bz2 (0.868)
T0822	1550	121	Hard	native.pdb	seq.txt	Zhang-Server_model1.pdb (0.442)	QUARK_model1.pdb (0.513)	T0822.tar.bz2 (0.539)
T0823	720	296	Trivial	native.pdb	seq.txt	Zhang-Server_model1.pdb (0.779)	QUARK_model1.pdb (0.781)	T0823.tar.bz2 (0.792)
T0824	1550	110	Hard	native.pdb	seq.txt	Zhang-Server_model1.pdb (0.296)	QUARK_model1.pdb (0.301)	T0824.tar.bz2 (0.336)
T0825	550	205	Trivial	native.pdb	seq.txt	Zhang-Server_model1.pdb (0.509)	QUARK_model1.pdb (0.510)	T0825.tar.bz2 (0.513)
T0829	750	70	Easy	native.pdb	seq.txt	Zhang-Server_model1.pdb (0.584)	QUARK_model1.pdb (0.609)	T0829.tar.bz2 (0.649)
T0833	750	136	Trivial	native.pdb	seq.txt	Zhang-Server_model1.pdb (0.743)	QUARK_model1.pdb (0.752)	T0833.tar.bz2 (0.776)
T0835	750	424	Easy	native.pdb	seq.txt	Zhang-Server_model1.pdb (0.700)	QUARK_model1.pdb (0.693)	T0835.tar.bz2 (0.726)
T0836	1550	204	Hard	native.pdb	seq.txt	Zhang-Server_model1.pdb (0.276)	QUARK_model1.pdb (0.269)	T0836.tar.bz2 (0.448)
T0837	1550	128	Hard	native.pdb	seq.txt	Zhang-Server_model1.pdb (0.427)	QUARK_model1.pdb (0.736)	T0837.tar.bz2 (0.736)
T0838	1550	154	Hard	native.pdb	seq.txt	Zhang-Server_model1.pdb (0.543)	QUARK_model1.pdb (0.539)	T0838.tar.bz2 (0.591)
T0839	750	262	Trivial		seq.txt	Zhang-Server_model1.pdb	QUARK_model1.pdb	T0839.tar.bz2
T0841	630	253	Trivial	native.pdb	seq.txt	Zhang-Server_model1.pdb (0.926)	QUARK_model1.pdb (0.921)	T0841.tar.bz2 (0.935)
T0842	1550	146	Hard		seq.txt	Zhang-Server_model1.pdb	QUARK_model1.pdb	T0842.tar.bz2
T0843	270	369	Trivial	native.pdb	seq.txt	Zhang-Server_model1.pdb (0.924)	QUARK_model1.pdb (0.925)	T0843.tar.bz2 (0.938)
T0844	1550	145	Hard		seq.txt	Zhang-Server_model1.pdb	QUARK_model1.pdb	T0844.tar.bz2
T0846	1550	146	Hard		seq.txt	Zhang-Server_model1.pdb	QUARK_model1.pdb	T0846.tar.bz2
T0847	750	176	Trivial	native.pdb	seq.txt	Zhang-Server_model1.pdb (0.788)	QUARK_model1.pdb (0.791)	T0847.tar.bz2 (0.803)
T0849	730	240	Trivial	native.pdb	seq.txt	Zhang-Server_model1.pdb (0.730)	QUARK_model1.pdb (0.706)	T0849.tar.bz2 (0.769)
T0850	1550	190	Very Hard		seq.txt	Zhang-Server_model1.pdb	QUARK_model1.pdb	T0850.tar.bz2
T0851	710	456	Trivial	native.pdb	seq.txt	Zhang-Server_model1.pdb (0.782)	QUARK_model1.pdb (0.769)	T0851.tar.bz2 (0.928)
T0854	700	212	Trivial	native.pdb	seq.txt	Zhang-Server_model1.pdb (0.794)	QUARK_model1.pdb (0.791)	T0854.tar.bz2 (0.829)
T0855	1550	119	Hard	native.pdb	seq.txt	Zhang-Server_model1.pdb (0.494)	QUARK_model1.pdb (0.409)	T0855.tar.bz2 (0.629)
T0856	490	159	Trivial	native.pdb	seq.txt	Zhang-Server_model1.pdb (0.869)	QUARK_model1.pdb (0.864)	T0856.tar.bz2 (0.880)
T0857	1550	105	Hard	native.pdb	seq.txt	Zhang-Server_model1.pdb (0.487)	QUARK_model1.pdb (0.504)	T0857.tar.bz2 (0.548)
T0858	720	494	Trivial	native.pdb	seq.txt	Zhang-Server_model1.pdb (0.910)	QUARK_model1.pdb (0.910)	T0858.tar.bz2 (0.924)
average	932	203				(0.688)	(0.694)	(0.748)