Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

I-TASSER and QUARK decoys for single domain proteins in CASP10

This page includes structural decoys generated by I-TASSER and QUARK servers during CASP10, for all proteins that the I-TASSER server deemed to be of a single domain. It only contains the proteins that have the experimental structure solved before the CASP10 conference. The data demonstrated a big gap between the submitted model and the best model in the decoy pool. As an unsolved problem, it is extremely challenging to select (or refine) the best models which are the closest to the experimental structures.

Reference: Yang Zhang, Interplay of I-TASSER and QUARK for template-based and ab initio protein structure prediction in CASP10. Proteins: Structure, Function, and Bioinformatics, 2014, 82 (Suppl 2), 175-187 (download the PDF file and Support Information).

---

[CASP8 Decoys] [CASP9 Decoys] [CASP10 Decoys] [CASP11 Decoys] [Decoy Hompage]

---

Target ID	#decoys	Length	Type	Native	Sequence	Zhang-Server_model1 (TM-score)	QUARK_model1 (TM-score)	Decoys (Best TM-score)
T0644	525	166	Easy	native.pdb	seq.txt	Zhang-Server_model1.pdb (0.865)	QUARK_model1.pdb (0.863)	T0644.tar.bz2 (0.888)
T0645	225	537	Trivial	native.pdb	seq.txt	Zhang-Server_model1.pdb (0.929)	QUARK_model1.pdb (0.932)	T0645.tar.bz2 (0.935)
T0649	825	210	Hard	native.pdb	seq.txt	Zhang-Server_model1.pdb (0.369)	QUARK_model1.pdb (0.381)	T0649.tar.bz2 (0.448)
T0650	225	346	Trivial	native.pdb	seq.txt	Zhang-Server_model1.pdb (0.877)	QUARK_model1.pdb (0.958)	T0650.tar.bz2 (0.960)
T0654	375	166	Easy	native.pdb	seq.txt	Zhang-Server_model1.pdb (0.820)	QUARK_model1.pdb (0.820)	T0654.tar.bz2 (0.832)
T0655	375	182	Easy	native.pdb	seq.txt	Zhang-Server_model1.pdb (0.749)	QUARK_model1.pdb (0.742)	T0655.tar.bz2 (0.766)
T0657	375	154	Trivial	native.pdb	seq.txt	Zhang-Server_model1.pdb (0.831)	QUARK_model1.pdb (0.836)	T0657.tar.bz2 (0.839)
T0659	375	85	Trivial	native.pdb	seq.txt	Zhang-Server_model1.pdb (0.906)	QUARK_model1.pdb (0.920)	T0659.tar.bz2 (0.927)
T0662	145	79	Trivial	native.pdb	seq.txt	Zhang-Server_model1.pdb (0.796)	QUARK_model1.pdb (0.792)	T0662.tar.bz2 (0.805)
T0664	225	540	Easy	native.pdb	seq.txt	Zhang-Server_model1.pdb (0.934)	QUARK_model1.pdb (0.935)	T0664.tar.bz2 (0.940)
T0665	375	67	Trivial	native.pdb	seq.txt	Zhang-Server_model1.pdb (0.739)	QUARK_model1.pdb (0.722)	T0665.tar.bz2 (0.743)
T0667	375	194	Easy	native.pdb	seq.txt	Zhang-Server_model1.pdb (0.803)	QUARK_model1.pdb (0.804)	T0667.tar.bz2 (0.828)
T0669	375	109	Easy	native.pdb	seq.txt	Zhang-Server_model1.pdb (0.606)	QUARK_model1.pdb (0.589)	T0669.tar.bz2 (0.723)
T0672	225	335	Easy	native.pdb	seq.txt	Zhang-Server_model1.pdb (0.784)	QUARK_model1.pdb (0.785)	T0672.tar.bz2 (0.793)
T0673	825	88	Hard	native.pdb	seq.txt	Zhang-Server_model1.pdb (0.350)	QUARK_model1.pdb (0.348)	T0673.tar.bz2 (0.407)
T0675	375	75	Easy	native.pdb	seq.txt	Zhang-Server_model1.pdb (0.346)	QUARK_model1.pdb (0.344)	T0675.tar.bz2 (0.375)
T0676	825	204	Very Hard	native.pdb	seq.txt	Zhang-Server_model1.pdb (0.510)	QUARK_model1.pdb (0.515)	T0676.tar.bz2 (0.548)
T0678	825	161	Very Hard	native.pdb	seq.txt	Zhang-Server_model1.pdb (0.362)	QUARK_model1.pdb (0.375)	T0678.tar.bz2 (0.526)
T0679	375	223	Easy	native.pdb	seq.txt	Zhang-Server_model1.pdb (0.798)	QUARK_model1.pdb (0.786)	T0679.tar.bz2 (0.815)
T0680	825	119	Hard	native.pdb	seq.txt	Zhang-Server_model1.pdb (0.513)	QUARK_model1.pdb (0.514)	T0680.tar.bz2 (0.748)
T0681	375	224	Easy	native.pdb	seq.txt	Zhang-Server_model1.pdb (0.872)	QUARK_model1.pdb (0.872)	T0681.tar.bz2 (0.891)
T0683	225	403	Trivial	native.pdb	seq.txt	Zhang-Server_model1.pdb (0.889)	QUARK_model1.pdb (0.887)	T0683.tar.bz2 (0.896)
T0688	370	196	Trivial	native.pdb	seq.txt	Zhang-Server_model1.pdb (0.869)	QUARK_model1.pdb (0.865)	T0688.tar.bz2 (0.874)
T0689	375	234	Trivial	native.pdb	seq.txt	Zhang-Server_model1.pdb (0.927)	QUARK_model1.pdb (0.925)	T0689.tar.bz2 (0.935)
T0691	825	163	Hard	native.pdb	seq.txt	Zhang-Server_model1.pdb (0.500)	QUARK_model1.pdb (0.454)	T0691.tar.bz2 (0.526)
T0692	185	473	Trivial	native.pdb	seq.txt	Zhang-Server_model1.pdb (0.942)	QUARK_model1.pdb (0.941)	T0692.tar.bz2 (0.944)
T0703	350	272	Trivial	native.pdb	seq.txt	Zhang-Server_model1.pdb (0.895)	QUARK_model1.pdb (0.884)	T0703.tar.bz2 (0.899)
T0704	335	254	Trivial	native.pdb	seq.txt	Zhang-Server_model1.pdb (0.838)	QUARK_model1.pdb (0.834)	T0704.tar.bz2 (0.846)
T0708	375	196	Trivial	native.pdb	seq.txt	Zhang-Server_model1.pdb (0.891)	QUARK_model1.pdb (0.891)	T0708.tar.bz2 (0.906)
T0714	200	88	Trivial	native.pdb	seq.txt	Zhang-Server_model1.pdb (0.911)	QUARK_model1.pdb (0.895)	T0714.tar.bz2 (0.912)
T0716	375	71	Easy	native.pdb	seq.txt	Zhang-Server_model1.pdb (0.685)	QUARK_model1.pdb (0.700)	T0716.tar.bz2 (0.740)
T0721	185	301	Trivial	native.pdb	seq.txt	Zhang-Server_model1.pdb (0.872)	QUARK_model1.pdb (0.875)	T0721.tar.bz2 (0.885)
T0722	825	152	Hard	native.pdb	seq.txt	Zhang-Server_model1.pdb (0.513)	QUARK_model1.pdb (0.494)	T0722.tar.bz2 (0.617)
T0723	150	132	Trivial	native.pdb	seq.txt	Zhang-Server_model1.pdb (0.859)	QUARK_model1.pdb (0.763)	T0723.tar.bz2 (0.876)
T0733	225	390	Trivial	native.pdb	seq.txt	Zhang-Server_model1.pdb (0.863)	QUARK_model1.pdb (0.860)	T0733.tar.bz2 (0.870)
T0749	225	449	Trivial	native.pdb	seq.txt	Zhang-Server_model1.pdb (0.963)	QUARK_model1.pdb (0.963)	T0749.tar.bz2 (0.964)
T0752	375	156	Easy	native.pdb	seq.txt	Zhang-Server_model1.pdb (0.874)	QUARK_model1.pdb (0.866)	T0752.tar.bz2 (0.900)
T0753	375	109	Trivial	native.pdb	seq.txt	Zhang-Server_model1.pdb (0.790)	QUARK_model1.pdb (0.780)	T0753.tar.bz2 (0.801)
T0757	160	247	Trivial	native.pdb	seq.txt	Zhang-Server_model1.pdb (0.893)	QUARK_model1.pdb (0.893)	T0757.tar.bz2 (0.902)
R0001	675	184	Hard	native.pdb	seq.txt	Zhang-Server_model1.pdb (0.202)	QUARK_model1.pdb (0.209)	R0001.tar.bz2 (0.244)
R0008	600	128	Easy	native.pdb	seq.txt	Zhang-Server_model1.pdb (0.519)	QUARK_model1.pdb (0.529)	R0008.tar.bz2 (0.614)
R0014	675	136	Very Hard	native.pdb	seq.txt	Zhang-Server_model1.pdb (0.393)	QUARK_model1.pdb (0.257)	R0014.tar.bz2 (0.482)
R0018	675	124	Very Hard	native.pdb	seq.txt	Zhang-Server_model1.pdb (0.366)	QUARK_model1.pdb (0.345)	R0018.tar.bz2 (0.523)
average	423	212				(0.726)	(0.720)	(0.765)