[Back to DEMO-EM Homepage]
DEMO-EM Download
DEMO-EM Suite is a package of standalone programs for assembling multi-domain protein structures from cryo-EM density maps.
The user manuals are at README.txt. Please report bugs and questions at Zhang
Lab Service System Discussion Board. The DEMO-EM Suite is free for academic and non-profit
researchers.
DEMO-EM library download:
- multidomain_protein_CA.tar.gz (~184MB):
Multi-domain protein structure library (for DEMO-EM, analogous template, optional).
- uniclust30_2017_04_hhsuite.tar.gz (~24.9GB): Uniclust30 library (for DEMO-EM, DeepMSA).
- uniref90.fasta.gz (~29.7GB): UniRef90 library (for DEMO-EM, DeepMSA).
- metaclust_2017_05.fasta.gz (~60.4GB): Metaclust library (for DEMO-EM, DeepMSA).
- CE (~7.5GB): CEthreader library (for DEMO-EM, LOMETS2 and CEthreader).
- PDB (~1.5GB):
non-redundant protein structures from PDB (for DEMO-EM, LOMETS2, MUSTER, CEthreader and SEGMER).
- MTX (~526MB):
Sequence profiles from PSI-BLAST search (for DEMO-EM, LOMETS2, MUSTER and SEGMER).
- DEP (~315MB):
Depth-dependent structure profiles of templates (for DEMO-EM, LOMETS2, MUSTER and SEGMER).
- SIG (~334MB):
Residue environmental profiles of templates (for DEMO-EM, LOMETS2).
- CNT (~133MB):
Side-chain center contacts of templates (for DEMO-EM, LOMETS2).
- dotProfile (~173MB):
Sequence profiles from PSI-BLAST search (for DEMO-EM, LOMETS2).
- stride (~3MB):
Seven state secondary structure assignment (for DEMO-EM, LOMETS2).
- summary1 (~66MB):
Sequence, secondary structure, solvent accessibilty, phi/psi angles (for DEMO-EM, LOMETS2, MUSTER and SEGMER).
- summary2 (~185MB):
Training data for phi/psi prediction and contact prediction by SVM (for DEMO-EM, LOMETS2, MUSTER and SEGMER).
- Bfactor (~155MB):
B-factor values of templates (for B-factor profile prediction).
Instructions on how to configure the libraries are available at
README.txt.
DEMO-EM download:
-
For academic users, please click
DEMO-EM
to download the DEMO-EM Suite.
-
If you need DEMO-EM Suite for a commercial use, please contact us through yangzhanglab
umich.edu.
