Contact Prediction for target T1004

User Input

>T1004 (458 residues) [download]
MALNFTTITENNVIRDLTTQVNNIGEELTKERNIFDITDDLVYNFNKSQKIKLTDDKGLT
KSYGNITALRDIKEPGYYYIGARTLATLLDRPDMESLDVVLHVVPLDTSSKVVQHLYTLS
TNNNQIKMLYRFVSGNSSSEWQFIQGLPSNKNAVISGTNILDIASPGVYFVMGMTGGMPS
GVSSGFLDLSVDANDNRLARLTDAETGKEYTSIKKPTGTYTAWKKEFEPKDMEKYLLSSI
RDDGSASFPLLVYTSDSKTFQQAIIDHIDRTGQTTFTFYVQGGVSGSPMSNSCRGLFMSD
TPNTSSLHGVYNAIGTDGRNVTGSVVGSNWTSPKTSPSHKELWTGAQSFLSTGTTKNLSD
DISNYSYVEVYTTHKTTEKTKGNDNTGTICHKFYLDGSGTYVCSGTFVSGDRTDTKPPIT
EFYRVGVSFKGSTWTLVDSAVQNSKTQYVTRIIGINMP

ResTriplet Contact Prediction

Contact map: respre.NNB.gz (final), respre.NNB.ful.gz (initial), ResTriplet_AT.NNB.gz (human).

Secondary structure: tmpseq.aln.ss2.

MSA for full sequence: seq.hhbaln.gz (stage 1), seq.jacaln.gz (stage 2), seq.hmsaln.gz (stage 3), seq.aln.gz (final).

Domain partition: respre.NNB.lydom

Domain 0: respre.NNB.domain0.fasta (sequence);
respre.NNB.domain0.out.gz (contact map);
respre.NNB.domain0.hhbaln.gz (stage 1 MSA);
respre.NNB.domain0.jacaln.gz (stage 2 MSA);
respre.NNB.domain0.hmsaln.gz (stage 3 MSA);
respre.NNB.domain0.aln.gz (final MSA).

Domain 1: respre.NNB.domain1.fasta (sequence);
respre.NNB.domain1.out.gz (contact map);
respre.NNB.domain1.hhbaln.gz (stage 1 MSA);
respre.NNB.domain1.jacaln.gz (stage 2 MSA);
respre.NNB.domain1.hmsaln.gz (stage 3 MSA);
respre.NNB.domain1.aln.gz (final MSA).

TripletRes Contact Prediction

Contact map: TripletRes.NNB.gz (final), TripletRes.NNB.ful.gz (initial), TripletRes_AT.NNB.gz (human).

Domain partition: TripletRes.NNB.lydom.

Zhang_Contact Prediction

Contact map: Zhang_Contact.NNB.gz (final), bayes.dat.gz (Naive Bayes), respre.dat.gz (best component predictor).