Template-based Modeling Results for YTFT_ECOLI

Submitted Primary Sequence

>Length 341
MMPQSLPDTTTPKRRFRWPTGMPQLVALLLVLLVDSLVAPHFWQVVLQDGRLFGSPIDILNRAAPVALLAIGMTLVIATGGIDLSVGAVMAIAGATTAAMTVAGFSLPIVLLSALGTGILAGLWNGILVAILKIQPFVATLILMVAGRGVAQLITAGQIVTFNSPDLSWFGSGSLLFLPTPVIIAVLTLILFWLLTRKTALGMFIEAVGINIRAAKNAGVNTRIIVMLTYVLSGLCAAIAGIIVAADIRGADANNAGLWLELDAILAVVIGGGSLMGGRFNLLLSVVGALIIQGMNTGILLSGFPPEMNQVVKAVVVLCVLIVQSQRFISLIKGVRSRDKT
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MMPQSLPDTTTPKRRFRWPTGMPQLVALLLVLLVDSLVAPHFWQVVLQDGRLFGSPIDILNRAAPVALLAIGMTLVIATGGIDLSVGAVMAIAGATTAAMTVAGFSLPIVLLSALGTGILAGLWNGILVAILKIQPFVATLILMVAGRGVAQLITAGQIVTFNSPDLSWFGSGSLLFLPTPVIIAVLTLILFWLLTRKTALGMFIEAVGINIRAAKNAGVNTRIIVMLTYVLSGLCAAIAGIIVAADIRGADANNAGLWLELDAILAVVIGGGSLMGGRFNLLLSVVGALIIQGMNTGILLSGFPPEMNQVVKAVVVLCVLIVQSQRFISLIKGVRSRDKT
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCEECCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MMPQSLPDTTTPKRRFRWPTGMPQLVALLLVLLVDSLVAPHFWQVVLQDGRLFGSPIDILNRAAPVALLAIGMTLVIATGGIDLSVGAVMAIAGATTAAMTVAGFSLPIVLLSALGTGILAGLWNGILVAILKIQPFVATLILMVAGRGVAQLITAGQIVTFNSPDLSWFGSGSLLFLPTPVIIAVLTLILFWLLTRKTALGMFIEAVGINIRAAKNAGVNTRIIVMLTYVLSGLCAAIAGIIVAADIRGADANNAGLWLELDAILAVVIGGGSLMGGRFNLLLSVVGALIIQGMNTGILLSGFPPEMNQVVKAVVVLCVLIVQSQRFISLIKGVRSRDKT
54333234222233202101000000000000000000012111001220211110010012000000000000000001101000000000000000001212111000000000001000100000001030110000000000010001000212101111210111021211211110000000001010113312100000000201300310303121000000000000000000000010201202100110000000000000001110301000000000001002000200102110110010000000000102211111312323444
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MMPQSLPDTTTPKRRFRWPTGMPQLVALLLVLLVDSLVAPHFWQVVLQDGRLFGSPIDILNRAAPVALLAIGMTLVIATGGIDLSVGAVMAIAGATTAAMTVAGFSLPIVLLSALGTGILAGLWNGILVAILKIQPFVATLILMVAGRGVAQLITAGQIVTFNSPDLSWFGSGSLLFLPTPVIIAVLTLILFWLLTRKTALGMFIEAVGINIRAAKNAGVNTRIIVMLTYVLSGLCAAIAGIIVAADIRGADANNAGLWLELDAILAVVIGGGSLMGGRFNLLLSVVGALIIQGMNTGILLSGFPPEMNQVVKAVVVLCVLIVQSQRFISLIKGVRSRDKT
1	PROSPECT2	1ejlI	0.090	0.982	1.648	threading_1	---GTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVG---VLSKADFKTQKEAAWAITNYTSGGTVEQIKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGFS
2	PPA-I	2nq2A	0.138	0.850	1.167	threading_2	--------------------YPKILFGLTLLLVITAVISLGIGRYSLSVPQIDPVQQQVIFQVRLPRILTALCVGAGLAPLVNPHIIGVTSGSAFGGTLAIFFGFSLYGLFTSTILFGFGTLALVFLFSFKSLLMLILIGMILSGLFSALVSLLQYISDTEEKLPSIVFWLMGSFATSNWEKLLFFFVPFLLCSSIL-LSLSWRLNLLSLDEKEAKALGVKMAPLRWLVIFLSGSLVACQVAISG--------SIGWVGLIIPHLSRMLVGASLL------PCTMLVGATYMLLVDNVARSLSIPISILTALIGAPLFGVLVYKL----------------
3	HHPRED-l	2nq2_A	0.170	0.830	1.170	threading_3	--------------YPK---ILFGLTLLLVITAVISLGIGRY-SLSVPQI---DVQQQVIQVRLPRILTAVGAGLALIFRNHIIGVTSGSAFGGTLA-IFF--GFSLYGLFTSTILFGFGTLALVFLFSFK---SLILIGMILSGLFSALVSLLQYISDTEEKLPSIVFWLMGSFATSNWEKLLFFFVFLLCSILL---SLSWRLNLLSLDEKEAKALGVKMAPLRWLVIFLSGSLVACQ----VAISGSI---GWVG-LIIPHLSRMLVGA-N---HQSLLCTMLVGATYMLLVDNVARDAEIPISILTALIGAPLFGVLVYKL----------------
4	PROSPECT2	1xm9A	0.091	0.962	1.553	threading_4	GLTHTCFQDESAKQQVYQLGGICKLVDLAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTAEIQKQLTGLLWNLSSTDELKEEDALPVLADRVIIPFSGWCVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYNCMCVLHNLSYRLDAEVPTRYRQLEYNALPEEETNPKGSGWLYHSDAIRTYLN-------LMGKSKKDATLELTASKGLMSSGMSQLIGPQIARLSGASLLSNMSRHPLLHR--VMGNQVFPEVTRLLTSHTGNTSNSEDILSSAC--YTVRN--LMASQPQLAKQYFSSMLNNIINLCRSSASPKAAEAARLQGVL
5	PPA-I	1l7vA	0.139	0.868	1.073	threading_5	-------LTLARQQQRQNIRWLLCLSVLLLALLLSLCAGEQWISPGDWFTPRGELFVWQIRLPRTLAVLLVGAALAISGEPGLLGVSNGAGVGLIAAVLLGQGQLPNWALGLCAIAGALIITLILLRFARRHLSTLLLAGVALGIICSALTWAIYFSTSVDLRQLYWGGFGGVDWRQSWLLALIPVLLWICCQS-RPNLALG---------EISARQLGLPLWFWRNVLVAATGWVGVSVALAG----------AIGFIGLVIPHILRLCGLTDHR--VLLPGCALAGASALLLADIVARLALLPIGVVTATLGAPVFIWLLLKA----------------
6	HHPRED-l	2qi9_A	0.131	0.830	1.169	threading_6	----LTLARQQQRQNIRWL----LSLSV-LLALLLSLSAGE-QWISPGDWFTPRG-ELFVQIRLPRTLAVVGAALAILFENAELGVSNGAGVGLIAAV-LLGQGLPNLSAIAGALIITLILL----RFARR-HLSTLLAGVALGIISSAL-TWAIYFSTS-VDLRQL-YW--GGFGGVDWRQSWL-LLIPVLLWISS---QSRP---LALGEISARQLGLPLWFWRNVLVAATGW-VGVS----VALAGAI---GFIG-LVIPHILRLSGLT-D---HRVLLGCALAGASALLLADIVAAAAELPIGVVTATLGAPVFIWLLLKA----------------
7	PROSPECT2	1ee4a	0.079	0.962	1.527	threading_7	ILSREHRPPIDVVIQAGVVPRLEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCSVVSQALAKLIYSMDTETLVDACWAISYLS---------DGPQEAIQAVIDVRILSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNIEACWAISNASSGGLQRPDIIRYLVSQGCIKPLC---DLLEIADNRIIEVTLDALILKMGEADKEALNINENADFIEKAGGMEKIFNCENDKIYEKAYKIIETY-F
8	PROSPECT2	1jdha	0.107	0.982	1.527	threading_8	AVVNLIKKEASRHAIMRSPQMVSAIVRTMTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESIILASGGPQALVNIMREKLLWTTSRVLKV---LSVCSSNKPAIVEALHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLL---GTLVQLLGSDDINVVTCAAGILSNLTGIEALVRTVLRAGDREDISRHQEAEMAQNAVRLHYGLLHPPSHWPLIKATVGLIVEGCTGALHILARDVHNRIVIRVAAGVLCELAQDKEAAEAIEELLHSRNS
9	PROSPECT2	3a6pA1	0.099	0.950	1.493	threading_9	AMDQVMDPNSTQRYRLEALKFCEEFVRHFGLQILEHVVKFRWANGTLNILEEENHIKDALSRIVVEMIKMLIELDTLSKQGETQTELVMFILLRLAEDVVTFQTLPPQMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDTAENCKLLEILCLLLNEQELQLGAAECLLIAVILSAAQTADGG------GLVEKHYVF-----------LKRLCQVLCALGNQLCALLGADSDVETPSNFGKYLESFLAFTTHPHEILSRDPLLLAIIPKYLRASMTEYSRFDFDSSSRAQQGEVMRLACRLDPKTSFQMAGEWLKYQLSTF
10	MUSTER	3k3fA	0.112	0.889	0.802	threading_10	--GRAFGEQLLKNPLIEFCDSVCRGCGQVMFQTVTGLL---FFAGIFYNSTTLGVCAVLGTAASTLTAQLLGVDKPLVRAGL----GFNGTLAGIALPFFFNYEPAMLGYVALNGAFTTIIMASLLNFLGKWGVPPFVLATWLLMFGVYLSLFHPGALIAPALPS---------MGTVTGRTFMEGLFKGVGEVMF------------QDNIVTGVI-AILVNS---RISALFAVIGSLVGLCTALIMHSPETPRLGLYGFNSVLCGIAMGGIFFYLNI-ALGCMVLGAIATGAFSVLLSPIGMPATWPFIVVTWLFLFAVPTEKAGTPEDNLRSLAI---

Predicted Tertiary Structure


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TM-score=0.912 to 1l7vA SCOP code=f.22.1.1	TM-score=0.727 to 1ialA SCOP code=a.118.1.1	TM-score=0.753 to 1l7vA SCOP code=f.22.1.1	TM-score=0.726 to 1l7vA SCOP code=f.22.1.1	TM-score=0.771 to 1l7vA SCOP code=f.22.1.1