Template-based Modeling Results for YTFB_ECOLI

Submitted Primary Sequence

>Length 212
MPGRFELKPTLEKVWHAPDNFRFMDPLPPMHRRGIIIAAIVLVVGFLLPSDDTPNAPVVTREAQLDIQSQSQPPTEEQLRAQLVTPQNDPDQVAPVAPEPIQEGQPEEQPQTTQTQPFQPDSGIDNQWRSYRVEPGKTMAQLFRDHGLPATDVYAMAQVEGAGKPLSNLQNGQMVKIRQNASGVVTGLTIDTGNNQQVLFTRQPDGSFIRAR
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210

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Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MPGRFELKPTLEKVWHAPDNFRFMDPLPPMHRRGIIIAAIVLVVGFLLPSDDTPNAPVVTREAQLDIQSQSQPPTEEQLRAQLVTPQNDPDQVAPVAPEPIQEGQPEEQPQTTQTQPFQPDSGIDNQWRSYRVEPGKTMAQLFRDHGLPATDVYAMAQVEGAGKPLSNLQNGQMVKIRQNASGVVTGLTIDTGNNQQVLFTRQPDGSFIRAR
CCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHCCCCHHHHHHHHHCCCCCCHHCCCCCCCEEEEEECCCCCEEEEEEEECCCEEEEEEECCCCCEEECC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MPGRFELKPTLEKVWHAPDNFRFMDPLPPMHRRGIIIAAIVLVVGFLLPSDDTPNAPVVTREAQLDIQSQSQPPTEEQLRAQLVTPQNDPDQVAPVAPEPIQEGQPEEQPQTTQTQPFQPDSGIDNQWRSYRVEPGKTMAQLFRDHGLPATDVYAMAQVEGAGKPLSNLQNGQMVKIRQNASGVVTGLTIDTGNNQQVLFTRQPDGSFIRAR
44232202100010010022020012002102100000000000000012332332222233232323232323233323232223333233222222322332333333322323323332223231210102323100200322202121010002132213312202211202021143120110102113212010112332222325
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210

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Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MPGRFELKPTLEKVWHAPDNFRFMDPLPPMHRRGIIIAAIVLVVGFLLPSDDTPNAPVVTREAQLDIQSQSQPPTEEQLRAQLVTPQNDPDQVAPVAPEPIQEGQPEEQPQTTQTQPFQPDSGIDNQWRSYRVEPGKTMAQLFRDHGLPATDVYAMAQVEGAGKPLSNLQNGQMVKIRQNASGVVTGLTIDTGNNQQVLFTRQPDGSFIRAR
1	MUSTER	2gu1A1	0.224	0.401	1.564	threading_1	-------------------------------------------------------------------------------------------------------------------------------RIHYMVKVGDTLSGIFAQLGVPYSILQKILSVDLDHLQLDMIQPGEELELMMDDMGQLSRLIYHMSIVEKAIYTRENDGSFSYDF
2	PROSPECT2	2l3jA	0.080	0.882	1.249	threading_2	PVLPKNALMQLNEIKPGLNGQVFEGSGPTKKKAKLHAAEKALRSFVQFPNASEAHLAMGRTLSVNTDFTSDQADFPDTLFNGFETPDKSEPPFYVGSNGDDSFSSSGDVSLSASPVPASLTQPPLPIPPPFPPPSGKNPVMILNEL-------------------------RPGLKYDFESHAKSFVMSVVVDGQFFEGSGRHLLEHHHHHH
3	PROSPECT2	3ppaA	0.071	0.858	1.226	threading_3	L---DTQRSDIATLLKTSLRKG--------DTWYLVDSRWFKQWKKYVGFDSWDKYQMGDQNVYPG-PIDNSGLLKQSLKEHLIDELDMEQEPIARKVVEQGMFVKHCKVEVYLTELKLCENGNMNNVVTRRFSKADTIDTIEKEI-----------------RKIFSIPDEKETRLNKYMSNTFEPLNAGLYQQVLVIEQKNEDGTW-PRG
4	SPARKS	2gu1a	0.224	0.401	1.315	threading_4	-------------------------------------------------------------------------------------------------------------------------------RIHYMVKVGDTLSGIFAQLGVPYSILQKILSVDLDHLQLDMIQPGEELELMMDDMGQLSRLIYHMSIVEKAIYTRENDGSFSYDF
5	PROSPECT2	1mv3A	0.142	0.797	1.189	threading_5	TPEI-----------RVNHEPEPAGGAT--------------------PGATLPKSPSQLRKGPPVPPPPKHTPSKEVKQEQILSLFEDTFVPEISVTTPSQPAEASEVAGGTQPAAGAQEPGETAASEAASSSLPAV-------VVETFPATVNGTVEGGSGAGRLDLPPGFMFKVQATDTDEL-----QLKAGDVVLVIPFQNENFTERP
6	PROSPECT2	2gu1A1	0.224	0.401	1.749	threading_6	R-------------------------------------------------------------------------------------------------------------------------------IHYMVKVGDTLSGIFAQLGVPYSILQKILSVDLDHLQLDMIQPGEELELMMDDMGQLSRLIYHMSIVEKAIYTRENDGSFSYDF
7	PPA-I	2gu1A1	0.224	0.401	2.149	threading_7	-------------------------------------------------------------------------------------------------------------------------------RIHYMVKVGDTLSGIFAQLGVPYSILQKILSVDLDHLQLDMIQPGEELELMMDDMGQLSRLIYHMSIVEKAIYTRENDGSFSYDF
8	HHPRED-l	2gu1_A	0.226	0.396	3.415	threading_8	-------------------------------------------------------------------------------------------------------------------------------RIHYMVKVGDTLSGIFAQLGVPYSILQKILSVDLDHLQLDMIQPGEELELMMDDMGQLSRLIYHMSIVEKAIYTRENDGSFSYD-
9	HHPRED-g	2gu1_A	0.224	0.401	3.917	threading_9	-------------------------------------------------------------------------------------------------------------------------------RIHYMVKVGDTLSGIFAQLGVPYSILQKILSVDLDHLQLDMIQPGEELELMMDDMGQLSRLIYHMSIVEKAIYTRENDGSFSYDF
10	SP3	2l9ya	0.099	0.670	0.912	threading_10	-------------------------------------------------GNYAGNFSGSSRDICLDGARLRAECRRGDGGYSTSV-IDLNRYLSNDNGHFR----------------WVSGGGGGGGTATVTVQQGDTLRDIGRRFDCDFHEIARRNNI----QNEDLIYPGQVLQVPTKGGSGSARDVRLVDGGKVLEAELRYSGGWNRSR

Predicted Tertiary Structure


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TM-score=0.396 to 3elgA SCOP code=d.98.2.1	TM-score=0.352 to 1yykA SCOP code=a.149.1.1	TM-score=0.396 to 3elgA SCOP code=d.98.2.1	TM-score=0.509 to 1w6vA SCOP code=d.324.1.1	TM-score=0.394 to 3elgA SCOP code=d.98.2.1