Template-based Modeling Results for YRFG_ECOLI

Submitted Primary Sequence

>Length 222
MHINIAWQDVDTVLLDMDGTLLDLAFDNYFWQKLVPETWGAKNGVTPQEAMEYMRQQYHDVQHTLNWYCLDYWSEQLGLDICAMTTEMGPRAVLREDTIPFLEALKASGKQRILLTNAHPHNLAVKLEHTGLDAHLDLLLSTHTFGYPKEDQRLWHAVAEATGLKAERTLFIDDSEAILDAAAQFGIRYCLGVTNPDSGIAEKQYQRHPSLNDYRRLIPSLM
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MHINIAWQDVDTVLLDMDGTLLDLAFDNYFWQKLVPETWGAKNGVTPQEAMEYMRQQYHDVQHTLNWYCLDYWSEQLGLDICAMTTEMGPRAVLREDTIPFLEALKASGKQRILLTNAHPHNLAVKLEHTGLDAHLDLLLSTHTFGYPKEDQRLWHAVAEATGLKAERTLFIDDSEAILDAAAQFGIRYCLGVTNPDSGIAEKQYQRHPSLNDYRRLIPSLM
CCCCCCHHHCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHCCCHHHCCEEEEHHHCCCCCCCHHHHHHHHHHCCCCHHHEEEEECCHHHHHHHHHCCCEEEEEECCCCCCCCHHHHCCCCCCCCHHHHHHHHC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MHINIAWQDVDTVLLDMDGTLLDLAFDNYFWQKLVPETWGAKNGVTPQEAMEYMRQQYHDVQHTLNWYCLDYWSEQLGLDICAMTTEMGPRAVLREDTIPFLEALKASGKQRILLTNAHPHNLAVKLEHTGLDAHLDLLLSTHTFGYPKEDQRLWHAVAEATGLKAERTLFIDDSEAILDAAAQFGIRYCLGVTNPDSGIAEKQYQRHPSLNDYRRLIPSLM
542312232010000001100000110010012001210023220213200210221022133212110121003211111111111112202133302200200241212100001112200101032020221010000022122233222001100411203031000011032002001401010000011222222332133222021032002201
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MHINIAWQDVDTVLLDMDGTLLDLAFDNYFWQKLVPETWGAKNGVTPQEAMEYMRQQYHDVQHTLNWYCLDYWSEQLGLDICAMTTEMGPRAVLREDTIPFLEALKASGKQRILLTNAHPHNLAVKLEHTGLDAHLDLLLSTHTFGYPKEDQRLWHAVAEATGLKAERTLFIDDSEAILDAAAQFGIRYCLGVTNPDSGIAEKQYQRHPSLNDYRRLIPSLM
1	MUSTER	3quqA	0.196	0.964	1.826	threading_1	M-----RKKLKAVLFDMDGVLFNSMPYHSEAWHQVMKTHG--LDLSREEAYMHERTGASTINIVFQRELTQEEIESIYHEKSILFNSY-PEAERMPGAWELLQKVKSEGLTPMVVTGSGQLSLLERLEHNPGMFHKELMVTAFDVKYGKPNPEPYLMALKKGGLKADEAVVIENAPLGVEAGHKAGIFTIAVNTGPLDGQVLLDAGADLLFPSMQTLCDSWD
2	SPARKS	2hsza	0.164	0.959	2.666	threading_2	------GTQFKLIGFDLDGTLVNSLPDLALSINSALKDVVTWIGNGADVLSQRAVDWACKQAEK--ELTEDEFKYFKRQFGFYYGENLCNISRLYPNVKETLEALKAQGYILAVVTNKPTKHVQPILTAFGIDHLFSEL-GGQSLPEIKPHPAPFYYLCGKFGLYPKQILFVGDSQNDIFAAHSAGCAVVGLTYGYNYNIPIAQSKPDWIFDDFADILKITQ
3	PROSPECT2	2no4A	0.204	0.973	2.978	threading_3	LVDS-----LRACVFDAYGTLLDVHSAVMRNADEVGASAEALSMLWRQRQLEYSWTRTLMHQYALTDEALTFALRTYHLGLKDRLMSAYKELSAYPDAAETLEKLKSAGYIVAILSNGNDEMLQAALKASKLDRVLDSCLSADDLKIYKPDPRIYQFACDRLGVNPNEVCFVSSNAWDLGGAGKFGFN-TVRINRQGNPPEYEFAPLKHQVNSLSELWPLLA
4	PPA-I	3e58A	0.161	0.923	2.197	threading_4	---------VEAIIFD-DGVLFDTEKYYYDRRASFLGQKG--ISIDHLPPSFFIGNTKQVWENILRDEYDKWDVSTLQEEYNTYKQNNPYKELIFPDVLKVLNEVKSQGLEIGLASSSVKADIFRALEENRLQGFFDIVLSGEEFKESKPNPEIYLTALKQLNVQASRALIIEDSEKGIAAGVAADV-EVWAIRDNEFGDQ---SAAKGLLDSLTDVLDLI-
5	HHPRED-l	2gfh_A	0.138	0.982	1.965	threading_5	-HHHMGLSRVRAVFFDLDNTLIDTAGASRRGMLEVIKLLQSKYHYKEEAEI-ICDKVQVKLSKEIQETKGGADNRKLEECYFLWKSTRLQHMILADDVKAMLTELRK-EVRLLLLTNGDRQTQREKIEACACQSYFDAIVIGGEQKEEKPAPSIFYHCCDLLGVQPGDCVMVGDTLTDIQGGLNAGLKATVWINKSGRVPLTSSPMPHYMVSSVLELPALL-
6	HHPRED-g	1te2_A	0.161	0.923	1.804	threading_6	-------RQILAAIFD-DGLLIDSEPLWDRAELDV-ASLG--VDISRRNLPDTLGLRID-VVDLYARQPWNGSRQEVVEVIARAISLVEETRPLLPGVREAVALCKEQGLLVGLASASPLH-LEKVLT-FDLRDSFDALASAEKLPYSKPHPQVYLDCAAKLGVDPLTCVALEDSVNG-IASKAAR-R-SIVVPAPEAQNDPRFVLANVKLSSLTELTADLL
7	SP3	3quqa	0.195	0.968	2.648	threading_7	M-----RKKLKAVLFDMDGVLFNSMPYHSEAWHQVMKTHG--LDLSREEAYMHERTGASTINIVFQRELKEATQEEIESIYHEKSILFNPEAERMPGAWELLQKVKSEGLTPMVVTGSGQLSLLERLEHFPGMFHKELMVTAFDVKYGKPNPEPYLMALKKGGLKADEAVVIENAPLGVEAGHKAGIFTIAVNTGPLDGQVLLDAGADLLFPSMQTLCDSWD
8	SAM-T99	1qh9A	0.203	0.955	2.386	threading_8	--------YIKGIAFDLYGTLFDVHSVVGRCDEAFPGRGREISALWRQKQLEYTWLRSLMNFQQATEDALRFTCRHLGLDLDSTLCDAYLRLAPFSEVPDSLRELKRRGLKLAILSNGSPQSIDAVVSHAGLRDGFDHLLSVDPVQVYKPDNRVYELAEQALGLDRSAILFVSSNAWDATGARYFGFPTCWINR-TGNVFEEMGQTPDWEVTSLRAVVELF-
9	MUSTER	2hoqA	0.164	0.964	1.823	threading_9	M--------VKVIFFDLDDTLVDTSKLAEIARKNAIENMIRHGPVDFETAYSELIELIKEYFPYHFDYLLRRLPKWISAGVIAYHNTKFAYLREVPGARKVLIRLKELGYELGIITDGNPVKQWEKILRLELDDFFEHVIISDFEGVKKPHPKIFKKALKAFNVKPEEALMVGDRYSDIYGAKRVGMKTVWFRYGKHSERELEYRYADYEIDNLESLLEVLA
10	SPARKS	2no4a	0.208	0.973	2.617	threading_10	-----LVDSLRACVFDAYGTLLDVHSAVMRNADEVGASAEALSMLWRQRQLEYSWTRTLMHQYALTDEALTFALRTYHLGLKDRLMSAYKELSAYPDAAETLEKLKSAGYIVAILSNGNDEMLQAALKASKLDRVLDSCLSADDLKIYKPDPRIYQFACDRLGVNPNEVCFVSSNAWDLGGAGKFGFNTVRINRQGNPPEYEFA-PLKHQVNSLSELWPLLA

Predicted Tertiary Structure


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TM-score=0.782 to 2ah5A SCOP code=c.108.1.6	TM-score=0.806 to 2hdoA SCOP code=c.108.1.6	TM-score=0.938 to 2hszA SCOP code=c.108.1.6	TM-score=0.906 to 1qh9A SCOP code=c.108.1.1	TM-score=0.821 to 1te2A SCOP code=c.108.1.6