Template-based Modeling Results for YRDD_ECOLI

Submitted Primary Sequence

>Length 180
MAKSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKTAQGVKHFCASKQCGKPVSAE
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180

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Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MAKSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKTAQGVKHFCASKQCGKPVSAE
CCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEECCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCCCEEEECCCCCCCEEECCCCCCCCCCCCCCEEEEEEECCCCCEEEECCCCCCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MAKSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKTAQGVKHFCASKQCGKPVSAE
554322222433320241211000221431100002313203223213222323223223232032012200012142110000121230321001122332222123142011022324213100001311302111223322130240312001123234222100014313332338
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MAKSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKTAQGVKHFCASKQCGKPVSAE
1	MUSTER	3ij2X	0.132	0.839	1.012	threading_1	--ETTGLYTHSGECCKACNLGEGVAQP-------CGA--DQTVCEPCLDSVSDVVSATEPCKPCTECLGLQSMSAP-------CVEA-RCAYGYYQDEETGHCEACSVCEVGSGLVFSCQDKQN-TVCEECPEGTYSDEANHVDPPCTVCEDTERQLRECTPWADAECEHH---------
2	SPARKS	1sg1x	0.123	0.861	0.832	threading_2	-ETSTGLYTHSGECCKACNL---------GEGVACGANQTVCEPCLDNVTFSDVVSATEPCKPCTECLGLQSMSAPCVEAD---DAVCRCAYGYYQDEETGHCEACSVCEVGSGLVFSCQDKQN-TVCEECPEGTYSDEANHVDLPCTVCEDTERQLRECTPWADAECE-----------
3	PROSPECT2	1sg1X	0.127	0.878	1.126	threading_3	ETCSTGLYTHSGECCKACNLGEGVAQPCGANQTVCEPCLDNVTFSDVVSATE-------PCKPCTECLGLQSMSAPCVEADDAVC---RCAYGYYQDEETGHCEACSVCEVGSGLVFQDKQNTVCEECPEGTYSDEANHVDP-CLPCTVCED--------TERQLRECTP---WADAECE
4	PPA-I	3ij2X	0.119	0.883	1.040	threading_4	ETCSTGLYTHSGECCKACNLGEGVAQP-------CGADQTVCEPCLDSVTFSDVVSATEPCKPCTECLGLQMSAPCVEADDAVC----RCAYGYYQDEETGHCEACSVCEVGSGLVFSCQDKQN-TVCEECPEGTYSDEANHVDPPCTVCEDTERQLRECTPWADAECEHH---------
5	HHPRED-l	2gai_A	0.263	0.317	2.094	threading_5	RNDRIVVDFPTNQKCS-CGKEMRLSFGKYGFYLKCE----CGKTRSVKNDEIAVI----------DDGKIFL------------------------------------------------------------------------------------------------------------
6	HHPRED-g	2gai_A	0.246	0.317	2.831	threading_6	FDRNDVVDFPTNQKCS-CGKEMRLSFGKYGFYLKCE----CGKTRSVKNDEIA----------VIDDGKIFL------------------------------------------------------------------------------------------------------------
7	SP3	3nzyb	0.132	0.883	0.706	threading_7	-CTQERHYEHLGRCCSRCEP---------GKYLSCTPTSDSVCLPCGPDEYLDTWNEEDKCLLHKVCDAGKALVAVDPGNHTAPRRC-ACTAGYHWNSDCECCRRNTECAPGFGAAHPLQLNKDTV-CTPCLLGFFSDVFSSTDKPWTNCLLGKLEAHQGTTESDVVCSSA---------
8	SAM-T99	2i13A	0.211	0.606	1.233	threading_8	DHLAEHQRTHKPYKCPECGK---------------------SFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAKPYAC---PECGKSFSQLATGEKPYKCPECGKNLHTHQRTHTGE-------------------KPYKCPECGK----------------------------
9	MUSTER	3me2R	0.137	0.894	0.998	threading_9	CTQERHYEH-LGRCCSRCEPGKYLSSK-------CTPTSD-SVCLPCGPDELDTWNEEDKCLLHKVCDAGKALVAVDPGNHTAPRRC-ACTAGYHWNSDCECCRRNTECAPGFGAQHPLQLNKDTV-CTPCLLGFFSDVFSSTDKPWTNCLLGKLEAHQGTTESDVVCSSSM--------
10	SPARKS	1i50i	0.158	0.667	0.806	threading_10	--------MTTFRFCRDCNNMLYPREDKENNLFEC---RTCSYVEEAGSPLVYRHELITNIGE----------------------TAGVVQDIGSDPTLPRSDRECPKCHSRENVFFQSQQRR-----KDTSMVLFFV--------CLSCSHIFTSDQKNKRTQFS--------------

Predicted Tertiary Structure


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TM-score=0.407 to 2hevR SCOP code=g.24.1.1	TM-score=0.403 to 2aw2B SCOP code=g.24.1.1	TM-score=0.542 to 2hevR SCOP code=g.24.1.1	TM-score=0.580 to 1d4vA SCOP code=g.24.1.1	TM-score=0.559 to 2hevR SCOP code=g.24.1.1