Template-based Modeling Results for YRBG_ECOLI

Submitted Primary Sequence

>Length 325
MLLATALLIVGLLLVVYSADRLVFAASILCRTFGIPPLIIGMTVVSIGTSLPEVIVSLAASLHEQRDLAVGTALGSNIINILLILGLAALVRPFTVHSDVLRRELPLMLLVSVVAGSVLYDGQLSRSDGIFLLFLAVLWLLFIVKLARQAERQGTDSLTREQLAELPRDGGLPVAFLWLGIALIIMPVATRMVVDNATVLANYFAISELTMGLTAIAIGTSLPELATAIAGVRKGENDIAVGNIIGANIFNIVIVLGLPALITPGEIDPLAYSRDYSVMLLVSIIFALLCWRRSPQPGRGVGVLLTGGFIVWLAMLYWLSPILVE
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MLLATALLIVGLLLVVYSADRLVFAASILCRTFGIPPLIIGMTVVSIGTSLPEVIVSLAASLHEQRDLAVGTALGSNIINILLILGLAALVRPFTVHSDVLRRELPLMLLVSVVAGSVLYDGQLSRSDGIFLLFLAVLWLLFIVKLARQAERQGTDSLTREQLAELPRDGGLPVAFLWLGIALIIMPVATRMVVDNATVLANYFAISELTMGLTAIAIGTSLPELATAIAGVRKGENDIAVGNIIGANIFNIVIVLGLPALITPGEIDPLAYSRDYSVMLLVSIIFALLCWRRSPQPGRGVGVLLTGGFIVWLAMLYWLSPILVE
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MLLATALLIVGLLLVVYSADRLVFAASILCRTFGIPPLIIGMTVVSIGTSLPEVIVSLAASLHEQRDLAVGTALGSNIINILLILGLAALVRPFTVHSDVLRRELPLMLLVSVVAGSVLYDGQLSRSDGIFLLFLAVLWLLFIVKLARQAERQGTDSLTREQLAELPRDGGLPVAFLWLGIALIIMPVATRMVVDNATVLANYFAISELTMGLTAIAIGTSLPELATAIAGVRKGENDIAVGNIIGANIFNIVIVLGLPALITPGEIDPLAYSRDYSVMLLVSIIFALLCWRRSPQPGRGVGVLLTGGFIVWLAMLYWLSPILVE
2110001000000000000210020011004202012100000000010101100000000123221100010000000000000000000220213131012100000000000000011030110100000000000000001002212231232222222132133111000000000000000000200010011002203012000000000000101100000000232321000010000000000000000000020302220001000000000000000013222301201000000000000000010012124
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MLLATALLIVGLLLVVYSADRLVFAASILCRTFGIPPLIIGMTVVSIGTSLPEVIVSLAASLHEQRDLAVGTALGSNIINILLILGLAALVRPFTVHSDVLRRELPLMLLVSVVAGSVLYDGQLSRSDGIFLLFLAVLWLLFIVKLARQAERQGTDSLTREQLAELPRDGGLPVAFLWLGIALIIMPVATRMVVDNATVLANYFAISELTMGLTAIAIGTSLPELATAIAGVRKGENDIAVGNIIGANIFNIVIVLGLPALITPGEIDPLAYSRDYSVMLLVSIIFALLCWRRSPQPGRGVGVLLTGGFIVWLAMLYWLSPILVE
1	PROSPECT2	1jdha	0.062	1.000	1.649	threading_1	VVNKAAVMVHQLSHAIMRSPQMVSAIVRTMQNTNDVETACTAGTLHNLSHHREGGIPALVKMLGSPVDSVLFYAITTLHNLLFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLMVCQVGGIEALVRTVLRAGDREDITEPAICALRQEAEMALPVVVKLLHPPSHWPLIKATVGLIRNLLLVRAHQDTQFVEGVRMEEIVEGCTGALHILIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAFRMS
2	HHPRED-g	2jln_A	0.114	0.862	1.105	threading_2	VWQVIVAIAAGCTIAVI----LLFFTQSAAIRWGINFTVAARM--PFGIRG-SLIPITLKALLSLFWFGFQTWLGALALDEI--------TRLLGFTN-----LPLWIVIFGAIQVVTTFYGWMNVFASPVLLAMGVYMVYLMLDGADVSMGGENPGMIHDIVKECKVDPNDARYATAQWLGMVP---ASIIFFIGAA-SMVLVGEWNPVIAITEVVGGVMAILFVFVLL------------ATWSTNPANLSPAYTLCSTFPR-VFT-----FKTGVIVSAVVGLLMMPW--Q-FAGVLNTFLNLLALLLHIPAMRWVAKTFPL
3	PROSPECT2	1xm9A	0.080	1.000	1.584	threading_3	KAVQYLYQAIGAYYIQHAKQQVYQGICKLVDLLRSPQQAAAGALRNLVFRSTTNKLETRSLLRRTGNAEIQKQLTGLLWNLSLADRVIIPFSGWCVVDPEVFFNATGCLRNAGRQTMRNYSGLIDSLMAYVQVENCMCVLHNLSYRLDAEVPTRYRQLEYNALPEEETNPKGSGWLYHSDAIRTYLNLMGKATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCKAAEAARLLLSD
4	PROSPECT2	1ejlI	0.092	1.000	1.556	threading_4	DIVKGIQATQAARKLLSPIDNIIRLIPKFVSFLGKTDFESAWALTNIASGTSEQAIPAFISLLASPHAALGNIAGDGSAFRDLVIAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVDEQTQKVIDAGALAVFPSLLTNQKEATWTMSNITAGRQDQIQQVVVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIKASLNLIEKYFS
5	PROSPECT2	3a6pA1	0.077	1.000	1.532	threading_5	ICVPCGLRLAEAIVRHFGLQILEHVVVYLKNSVEEENHIKDALSRIVVQHWPDMLIELDTLSKQGETQTELVMFILLRLAEDVVQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGMSHITAENCKLLEILCLLLNEQELQLGAAECLLIAVRKPLMVLFGDVAMHYILSAAQTADGGHYVFLKRLCQVLCALGNQLCALLGADSDVETPSNFGKYLESFLAFTTQMTWGALFRHEILSRDPLLLAIIPKYLRASMSCEYSRFDFDSDEDFNAVMRLACRLDPKTSFQMAGEWLKY
6	PROSPECT2	1ee4a	0.121	0.963	1.523	threading_6	EQLSATVKFRQILRLVEFEMLQLEAAWALTNIASGTSAAVPLFIQLLYTGSVEVKEQAIWA--------LGNVAGDSTDYRDYVLAMEPILGLFNSNKPSLIRTATWTLSNLCALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVEL----LSHESTLVQTPALRAVGNIVTGNDLQTQVVIALRLLLSSPKENICWTISNITAGNTEQIQAVIVKLLEVAEDKTKKEACWAISNASSGGLIRYLVSQGCIDNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFKIYEKAYKIIE
7	MUSTER	3o7pA	0.121	0.963	0.831	threading_7	KLSYKAGIITGLFLYALGAALFWPAAEI-----NYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESLNLAQTFASFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSDAKQGSFSASLSRLARIRWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVG------LIALTLCSAFMSIQYPTIFSLGIKNLGQ-DTKYGSSFIVMTIIGGGIVTPVMGFVSD
8	SPARKS	2xwub	0.083	1.000	0.795	threading_8	PLQDCEALIQAAFAALQDSELFDSSVEAIVNAISQPPLVQEQLRQAVQNGDMETSHGICRIAVALGENHSRALLDQVEHWQSFLALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGFWSSDEKEQFRIYRVDISDTLMYVYEMLGAELLSNLYDKLGRLLSYSWQHTEALLYGFQSTIDDVVPGLIGLIPRISISTVMFTIGSEWLPVMINSVLPLVLHALGNPLKKICRECKYDLAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALVEEILKNLH
9	PROSPECT2	2bkuB2	0.098	0.883	1.506	threading_9	TSASISTFVMDKLDAQSLQELQSNILTVLAAVIRKSPS-------SVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLG---------------KGFEKYLETFSPYLLKALNQVDSP---VSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNI--GADFIPYLNDIMALCENGTLEALDYQIKVLEAVLDAYVGIVAGLHDK-----PEALFPYVGTIFQFIAQVAE------DPQLYSEDATSRAAVGLIGDIAAMFPDGSIKQFYGQDWVIDYIKRTWAREQQKRQLSL
10	PPA-I	3g61A1	0.068	0.954	0.904	threading_10	AIIHGVALPLMMLIFGDMTDSFASVGNVSKNSTNMSEADKRAMFAKLEEAYYYTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMN---QEIGWFDVHDVGELNTRLTDDVSKINEGIGDKIGMFFQAMATFFGGFIIG----FTRIGQVLTVFFSVLIGAFSVGQASPNIEAFANARGAAYEVFKIIDNKPSIDSFSGWQLTLLLLAIVPIIAIAGVVEMKMLSGQ--------ALKDKKELEGSGKIATEAIENFRTVVSLTREQKFETMYAQSLQIPYRNAMKKAHVFGITFSFTQAMMYFSYAACFRFGAYLVTQ

Predicted Tertiary Structure


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TM-score=0.433 to 1dowA SCOP code=a.24.9.1	TM-score=0.541 to 1xm9A SCOP code=a.118.1.24	TM-score=0.525 to 2q6hA SCOP code=f.54.1.1	TM-score=0.439 to 1z0jB SCOP code=a.2.19.1	TM-score=0.800 to 1xm9A SCOP code=a.118.1.24