Template-based Modeling Results for YRAR_ECOLI

Submitted Primary Sequence

>Length 211
MSQVLITGATGLVGGHLLRMLINEPKVNAIAAPTRRPLGDMPGVFNPHDPQLSDALAQVTDPIDIVFCCLGTTRREAGSKEAFIHADYTLVVDTALTGRRLGAQHMLVVSAMGANAHSPFFYNRVKGEMEEALIAQNWPKLTIARPSMLLGDRSKQRMNETLFAPLFRLLPGNWKSIDARDVARVMLAESMRPEHEGVTILSSSELRKRAE
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210

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Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MSQVLITGATGLVGGHLLRMLINEPKVNAIAAPTRRPLGDMPGVFNPHDPQLSDALAQVTDPIDIVFCCLGTTRREAGSKEAFIHADYTLVVDTALTGRRLGAQHMLVVSAMGANAHSPFFYNRVKGEMEEALIAQNWPKLTIARPSMLLGDRSKQRMNETLFAPLFRLLPGNWKSIDARDVARVMLAESMRPEHEGVTILSSSELRKRAE
CCEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCEEEEECCCCHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCEEECCCCHHHHHHHHHHHHCCCCCCCCCEEEHHHHHHHHHHHHHCCCCCCCEEECHHHHHHHHC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MSQVLITGATGLVGGHLLRMLINEPKVNAIAAPTRRPLGDMPGVFNPHDPQLSDALAQVTDPIDIVFCCLGTTRREAGSKEAFIHADYTLVVDTALTGRRLGAQHMLVVSAMGANAHSPFFYNRVKGEMEEALIAQNWPKLTIARPSMLLGDRSKQRMNETLFAPLFRLLPGNWKSIDARDVARVMLAESMRPEHEGVTILSSSELRKRAE
4210000001010002002100423311100000122234131101111131130013002301000000001243222331012001100110020044120200000001012232212112011101200332423200001000000332321001100020032021312001030003000100232334222002122033314
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210

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Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MSQVLITGATGLVGGHLLRMLINEPKVNAIAAPTRRPLGDMPGVFNPHDPQLSDALAQVTDPIDIVFCCLGTTRREAGSKEAFIHADYTLVVDTALTGRRLGAQHMLVVSAMGANAHSPFFYNRVKGEMEEALIAQNWPKLTIARPSMLLGDRSKQRMNETLFAPLFRLLPGNWKSIDARDVARVMLAESMRPEHEGVTILSSSELRKRAE
1	MUSTER	2a35A	0.454	0.972	2.586	threading_1	PKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALAEHP-RLDNPVGPLAELLPQLDGSIDTAFCCLGTTIKEAGSEEAFRAVDFDLPLAVGKRALEMGARHYLVVSALGADAKSSIFYNRVKGELEQALQEQGWPQLTIARPSLLFGPREEFRLAEILAAP----IAGKYHGIEACDLARALWRLALEEGK-GVRFVESDELRKLGK
2	SPARKS	2bkaa	0.300	0.995	2.745	threading_2	NKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEENQEVVDFEKLDDYASAFQGHDVGFCCLGTTRGKAG-AEGFVRVDRDYVLKSAELAKAGGCKHFNLLSSKGADKSSNFLYLQVKGEVEAKVEELKFDRYSVFRPGVLLCDRQESRPGEWLVRKFFGSLPDSGHSVPVVTVVRAMLNNVVRPRDKQMELLENKAIHDLGK
3	PROSPECT2	2bkaA	0.305	0.995	3.113	threading_3	NKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEVNQEVVDFEKLDDYASAFQGHDVGFCCLGTTRGKAG-AEGFVRVDRDYVLKSAELAKAGGCKHFNLLSSKGADKSSNFLYLQVKGEVEAKVEELKFDRYSVFRPGVLLCDRQESRPGEWLVRKFFGSLPDSWHSVPVVTVVRAMLNNVVRPRDKQMELLENKAIHDLGK
4	PPA-I	2a35A	0.454	0.972	2.534	threading_4	PKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALAEHPRLDNPVG-PLAELLPQLDGSIDTAFCCLGTTIKEAGSEEAFRAVDFDLPLAVGKRALEMGARHYLVVSALGADAKSSIFYNRVKGELEQALQEQGWPQLTIARPSLLFGPREEFRLAEI----LAAPIAGKYHGIEACDLARALWRLALEEGK-GVRFVESDELRKLGK
5	HHPRED-l	2a35_A	0.456	0.967	1.614	threading_5	PKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALAEHPRLD-NPVGPLAELLPQLDGSIDTAFCCLGTTIKEAGSEEAFRAVDFDLPLAVGKRALEMGARHYLVVSALGADAKSSIFYNRVKGELEQALQEQGWPQLTIARPSLLFGPREEFRLAEILAAPIA----GKYHGIEACDLARALWRLALEEG-KGVRFVESDELRKLG-
6	HHPRED-g	2a35_A	0.451	0.967	1.592	threading_6	PKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALAEHPR--LDNPVGPLAELLPQLDSIDTAFCCLGTTIKEAGSEEAFRAVDFDLPLAVGKRALEMGARHYLVVSALGADAKSSIFYNRVKGELEQALQEQGWPQLTIARPSLLFGPREEFRLAEILAAPIA----GKYHGIEACDLARALWRLALEEGK-GVRFVESDELRKLGK
7	SP3	2bkaa	0.300	0.995	3.003	threading_7	NKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEENQEVVDFEKLDDYASAFQGHDVGFCCLGTTRGKAG-AEGFVRVDRDYVLKSAELAKAGGCKHFNLLSSKGADKSSNFLYLQVKGEVEAKVEELKFDRYSVFRPGVLLCDRQESRPGEWLVRKFFGSLPDSGHSVPVVTVVRAMLNNVVRPRDKQMELLENKAIHDLGK
8	SAM-T99	2a35A	0.449	0.972	3.483	threading_8	PKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKAL-AEHPRLDNPVGPLAELLPQLDGSIDTAFCCLGTTIKEAGSEEAFRAVDFDLPLAVGKRALEMGARHYLVVSALGADAKSSIFYNRVKGELEQALQEQGWPQLTIARPSLLFGPREEFRLAEILAAPIAG----KYHGIEACDLARALWRLALE-EGKGVRFVESDELRKLGK
9	MUSTER	2bkaA	0.300	0.995	2.431	threading_9	NKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAQEVVDFEKLDDYASAFQGHDVGFCCLGTTRGKAG-AEGFVRVDRDYVLKSAELAKAGGCKHFNLLSSKGADKSSNFLYLQVKGEVEAKVEELKFDRYSVFRPGVLLCDRQESRPGEWLVRKFFGSLPASGHSVPVVTVVRAMLNNVVRPRDKQMELLENKAIHDLGK
10	SPARKS	2a35a	0.444	0.972	2.554	threading_10	PKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALAEHPR-LDNPVGPLAELLPQLDGSIDTAFCCLGTTIKEAGSEEAFRAVDFDLPLAVGKRALEMGARHYLVVSALGADAKSSIFYNRVKGELEQALQEQGWPQLTIARPSLLFGPREEFRLAEI----LAAPIAGKYHGIEACDLARALWRLALEEGK-GVRFVESDELRKLGK

Predicted Tertiary Structure


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TM-score=0.974 to 2a35A SCOP code=c.2.1.2	TM-score=0.976 to 2a35A SCOP code=c.2.1.2	TM-score=0.943 to 2bkaA SCOP code=c.2.1.2	TM-score=0.930 to 2bkaA SCOP code=c.2.1.2	TM-score=0.975 to 2a35A SCOP code=c.2.1.2