Template-based Modeling Results for YPJD_ECOLI

Submitted Primary Sequence

>Length 263
MPVFALLALVAYSVSLALIVPGLLQKNGGWRRMAIISAVIALVCHAIALEARILPDGDSGQNLSLLNVGSLVSLMICTVMTIVASRNRGWLLLPIVYAFALINLALATFMPNEYITHLEATPGMLVHIGLSLFSYATLIIAALYALQLAWIDYQLKNKKLAFNQEMPPLMSIERKMFHITQIGVVLLTLTLCTGLFYMHNLFSMENIDKAVLSIVAWFVYIVLLWGHYHEGWRGRRVVWFNVAGAVILTLAYFGSRIVQQLIS
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MPVFALLALVAYSVSLALIVPGLLQKNGGWRRMAIISAVIALVCHAIALEARILPDGDSGQNLSLLNVGSLVSLMICTVMTIVASRNRGWLLLPIVYAFALINLALATFMPNEYITHLEATPGMLVHIGLSLFSYATLIIAALYALQLAWIDYQLKNKKLAFNQEMPPLMSIERKMFHITQIGVVLLTLTLCTGLFYMHNLFSMENIDKAVLSIVAWFVYIVLLWGHYHEGWRGRRVVWFNVAGAVILTLAYFGSRIVQQLIS
CCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MPVFALLALVAYSVSLALIVPGLLQKNGGWRRMAIISAVIALVCHAIALEARILPDGDSGQNLSLLNVGSLVSLMICTVMTIVASRNRGWLLLPIVYAFALINLALATFMPNEYITHLEATPGMLVHIGLSLFSYATLIIAALYALQLAWIDYQLKNKKLAFNQEMPPLMSIERKMFHITQIGVVLLTLTLCTGLFYMHNLFSMENIDKAVLSIVAWFVYIVLLWGHYHEGWRGRRVVWFNVAGAVILTLAYFGSRIVQQLIS
44010000000000000000000133211111000000000000000000010012132021000010000000000000000002230210000000000000000100123111213211001000000000000000000000010011120333321113300012100210010010000000000000000012002232112000000000000000000021102021000000000000000100020012115
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MPVFALLALVAYSVSLALIVPGLLQKNGGWRRMAIISAVIALVCHAIALEARILPDGDSGQNLSLLNVGSLVSLMICTVMTIVASRNRGWLLLPIVYAFALINLALATFMPNEYITHLEATPGMLVHIGLSLFSYATLIIAALYALQLAWIDYQLKNKKLAFNQEMPPLMSIERKMFHITQIGVVLLTLTLCTGLFYMHNLFSMENIDKAVLSIVAWFVYIVLLWGHYHEGWRGRRVVWFNVAGAVILTLAYFGSRIVQQLIS
1	SPARKS	3a0oa	0.077	0.943	1.203	threading_1	RQMYIDCQEVIYAIRHLAIAGRVLGRDDLLDASRKWLLAVA----------AWDTKGATSRAYN-DEAGFRVVVALAWGYDWLYDHLSEDERRTVRSVLLERTREVADHVIAHARIHVFPYDSHAVRSLSAVLTPACIALQGESDEAGEWLDYTVEFLATLYSPWAGTAEGPHYWMTGMAYLIEAANLIRSYIGY----DLYQRPFFQNTGRFPLYTKAPGTRRANFGDDSTLGDLPGLKLGYNVRQFAGVTHYQWYFDHIKA
2	PROSPECT2	3a0oA3	0.076	1.000	1.426	threading_2	GAFADAVAKHCGWAEFYEKSVEPWLERPVWRQMYIDCQEVIYAIRHLAIAGRVLGTKGATSRAYNDEAGFRVVVALAWGYDWLYDHLSEDERRTVRSVLLERTREVADHVIAHARIHVFPYDSHAVRSLSAVLTPACIALDEAGEWLDYTVEFLATLYSPWAGTDAEGPHYWMTGMAYLIEAANLIRSYIFQNTGRFPLYTKLGDLPGLKLGYNVRQFAHYQWYFDHIKADATGTEMAFYNYGWWDLNFDDLVYRHDYPADLP
3	SPARKS	3afla	0.073	0.935	1.154	threading_3	RQMYIDCQEVIYAIRHLAIAGRVLGRDDLLDASRKWLLAVA-------------AWDTKGATSRAYNDEAGFRVVVALAWGYDWLYDHLDERRTVRSVLLERTREVADHVIAHARIHVFPYDSHAVRSLSAVLTPACIALDEAGEWLDYTVEFLATLYSPWAGTDGGWAEGPHYWMTGMAYLIEAANLIRSYIGY----DLYQRPFFQNTGRFPLYTKARRANFGDDSTLGDLPGLKLGYNVRQFAGVTGNGHYQWYFDHIKA
4	PROSPECT2	2bkuB2	0.079	0.958	1.388	threading_4	TDTVAETSASI-STFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFDVFYAISALAASLGKGFEKYLETFSPVGFIADISNSLEEDQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVA---AQNTKPENGTLEALDYQIKVLEAVLDAYVG-------IVAGLHDKPEALFPYVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMFKQFYGQDWVIDYIL
5	SPARKS	2x1gf	0.078	0.928	1.128	threading_5	IHGCMTADENELAESCLKTMVNIIIQPDCHNYPKTAFVLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSGITSADPELSILVHRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRCYRQDISDTFMYC------------YDVLNDYILEILAAMLDEAIADLQRHTHWTKLEACIYSFQSVA-------EHRQIPRLMR
6	PROSPECT2	1ezfa	0.070	0.981	1.308	threading_6	NSLMRNAVCIFYLVLRALDTLEDDMTISVEKKVPLLHNFHSFLRQVLEDFPTISLEFRNLAEKYQTVIADICRRMGIGMAEFLDKHVTEQEWDKYCHYVAGLVGIGLS-----RLFSASEFEDPLVGEDTERANSMGLFLQKTNIIRDYLEDQQGGREFWPWSRYVKKLGDFAKPENIDLAVQCLNELITNALHHIPDVITYLSRLRNQSVFNFCAIPQVMAIATLAACYDATNMPAVKAIIYQYMEEIYHRITRQIISTIRN
7	SPARKS	1pw4a	0.086	0.973	1.085	threading_7	LGFALSGISIAYGFSKFI-MGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAV-----MFVLLFLCGWFQGMGWPPCGRTMVHGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEHFALDKSSWAYFLYEYA-GIPGTLLCGWRGNRGATGVFFMTLVTIATIVNPTVDMICMI
8	PROSPECT2	3kb9A	0.083	0.871	1.284	threading_8	AVLQETTVEEYADGLCYTDLMAGYYLGAPDEVLQAIADYSAWFFVWDDRHDRDIVHG------RAGAWRRLRGLLHTALDSPGDHLHHEDTL------VAGFADSVRRLYAFLP------------ATWNARFARHFHTVIEAYDREFHNRTR----------GIVPGVEEYLELRRLTFAHWIWTDLLEPSSGCELPDAVRKHPAYRRAALLSQEFAAWYLGISLITHHSLTLEEAIGEVFLAVERDALRFADSGAVRANVN
9	SPARKS	2xwub	0.091	0.966	1.046	threading_9	EALIQAAFAALLFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNG------DMETSHGICRIAVALGENHSRAL--LDQVEHWQSFLALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILEKQAVYQQVYRPVYFQLVDVHKAQFPSGFWSSDEKEQFRIYRVDISDTLMYVYEMLGAELLSNLYDRLLTSYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIVQLADTVMFTIGAL-SEWLA
10	PROSPECT2	3ibvA1	0.073	0.943	1.281	threading_10	MSAQDVENAVEAALQATDFIGSLRSSSTGWKICHEIFSEPSTRLICLQTLSEKVREWNNESN--LLELQMIRDSVWSYIKELSFLDEPAYISNAVQ---HLLTLLFLQLYPSNW-------NDFFASLQGVIAASSQSEFSNFYLKVLLSIGDEIADSL---VLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWIVNEPCMNLLYSFLQIEELRCAACETMTEIVNKKMKPLEKLNLLK

Predicted Tertiary Structure


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TM-score=0.426 to 1chkA SCOP code=d.2.1.7	TM-score=0.592 to 1j0nA SCOP code=a.102.3.2	TM-score=0.609 to 1j0nA SCOP code=a.102.3.2	TM-score=0.437 to 1z0jB SCOP code=a.2.19.1	TM-score=0.574 to 1fp3A SCOP code=a.102.1.3