Template-based Modeling Results for YPHF_ECOLI

Submitted Primary Sequence

>Length 327
MPTKMRTTRNLLLMATLLGSALFARAAEKEMTIGAIYLDTQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGTVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTEDGKQWLATHVDGLP
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MPTKMRTTRNLLLMATLLGSALFARAAEKEMTIGAIYLDTQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGTVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTEDGKQWLATHVDGLP
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCEEECCCEEECHHHHHHHHHHHCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MPTKMRTTRNLLLMATLLGSALFARAAEKEMTIGAIYLDTQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGTVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTEDGKQWLATHVDGLP
553323101100000000000000312333110000011121000001200220044132201001112322222002101200233010000000133001300220251301000011213342133200000001112002200200021012233330100002031132012222101210433132010002221212320120023003212201000010010000002002424322200000011123002103333102000111032002000000120025323233202020200122201221122124224
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MPTKMRTTRNLLLMATLLGSALFARAAEKEMTIGAIYLDTQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGTVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTEDGKQWLATHVDGLP
1	MUSTER	2fn8A	0.222	0.881	2.496	threading_1	----------------------------KGKMAIVISTLNNPWFVVLAETAKQRAEQLGY--EATIFDSQNDTAKESAHFDAIIAAGYDAIIFNPTDADGSIANVKRAKEAGIPVFCVDRGINAR---GLAVAQIYSDNYYGGVLMGEYFVKFLKEKYPKEIPYAELLGLSAQPTWDRSNGFHSVVDQ-YPEFKMVAQQSAEFRDTAYKVTEQILQAHPEIKAIWCGNDAMALGAMKACEAAGR-TDIYIFGFDGAEDVINAIKEGKQIVATIMQFPKLMARLAVEWADQYLRGERSFPEIVPVTVELVTRENIDKYTAYGRK----
2	SPARKS	2x7xa	0.181	0.862	3.495	threading_2	-----------------------------HFRIGVAQCSDDSWRHKMNDEILREAMFY-NGVSVEIRSAGDDNSKQAEDVHYFMDEGVDLLIISANEAAPMTPIVEEAYQKGIPVILVDRKILSDK----YTAYIGADNYEIGRSVGNYIASS----LKGKGNIVELTGSGSTPAMERHQGFMAAIS-KFPDIKLIDKADAAWRGPAEIEMDSMLRRHPKIDAVYAHNDRIAPGAYQAAKMAGREKEMIFVGIDALPNGLELVLDSVL-DATFIYPT--NGDKVLQLAMDILEKKP-YPKETVMNTAVVDRTNAHVMQLQT--THIS
3	PROSPECT2	2vk2A	0.190	0.884	3.509	threading_3	----------------------------PLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIA--DGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYM-TTVTADNILEGKLIGDWLVKEV---NGKPCNVVELQGVGASVAIDRKKGFAEAI-KNAPNIKIIRSQSGDFRSKGKEVMESFIKAEKNICMVYAHNDDMVIGAIQAIKEAGLKKDILTGSIDGVPDIYKAMMDGEA-NASVELTPNMAGPAFDALEKYKKDGTM-PEKLTLTKSTLYLPDTAKE-ELEKKKNMGY
4	PPA-I	2fn8A	0.226	0.881	3.036	threading_4	----------------------------KGKMAIVISTLNNPWFVVLAETAKQRAEQLGY--EATIFDSQNDTAKESAHFDAIIAAGYDAIIFNPTDADGSIANVKRAKEAGIPVFCVDRGINA---RGLAVAQIYSDNYYGGVLMGEYFVKFLKEKYPDAKPYAELLGLSAQPTWDRSNGFHSVVDQ-YPEFKMVAQQSAEFRDTAYKVTEQILQAHPEIKAIWCGNDAMALGAMKACEAAGR-TDIYIFGFDGAEDVINAIKEGKQIVATIMQFPKLMARLAVEWADQYLRGERSFPEIVPVTVELVTRENIDKYTAYGRK----
5	HHPRED-l	2fn9_A	0.210	0.844	2.101	threading_5	------------------------------GKMAIVISTNNPWFVVLAETAKQRAEQLGYEATIF--DSQNDTAKESAHFDAIIAAGYDAIIFNPTDADGSIANVKRAKEAGIPVFCVDRGINARG---LAVAQIYSDNYYGGVLAGEYFVKFLKEKYKEIPYAELLGILSAQPTWDRSNGFHSVVDQYPEFKMVAQQSAEFDRDTAYKVTEQILQAHPEIKAIWCGNDAMALGAMKACEAAG-RTDIYIFGFDGAEDVINAIKEGKQIVATIMQFPKLMARLAVEWADQYLRGERSFPEIVPVTVELVTRE---------------
6	HHPRED-g	2h3h_A	0.206	0.875	2.087	threading_6	----------------------------MLTIGVIGKSV-HPYWSQVEQGVKAAGKALGVDTK-FFVPQKEDINAQLQMLESFIAEGVNGIAIAPSDPTAVIPTIKKALEMGIPVVTLDTDSPDSG----RYVYIGTDNYQAGYTAGL----IMKELLGGKGKVVIGTGLTAMNSLQRIQGFKDAIKD--SEIEIVDILNDEEGARAVSLAEAALNAHPDLDAFFGVYAYNGPAQALVVKNAGKVGKVKIVCFDTTPDILQYVKEGV-IQATMGQRPYMMGYLSVTVLYLMNKIGVKVDYVIDTGVDVVTPENLDEYLKKMEELGIP
7	SP3	2x7xa	0.181	0.862	3.756	threading_7	-----------------------------HFRIGVAQCSDDSWRHKMNDEILREAMFYN-GVSVEIRSAGDDNSKQAEDVHYFMDEGVDLLIISANEAAPMTPIVEEAYQKGIPVILVDRKILSDK----YTAYIGADNYEIGRSVGNYIASSL----KGKGNIVELTGSGSTPAMERHQGFMAAIS-KFPDIKLIDKADAAWRGPAEIEMDSMLRRHPKIDAVYAHNDRIAPGAYQAAKMAGREKEMIFVGIDALPNGLELVLDSVL-DATFIYPT--NGDKVLQLAMDILEKKP-YPKETVMNTAVVDRTNAHVMQLQT--THIS
8	SAM-T99	2ioyA	0.229	0.829	3.792	threading_8	------------------------------KTIGLVISTLNPFFVTLKNGAEEKAKELGYKIIVE--DSQNDSSKELSNVEDLIQQKVDVLLINPVDSDAVVTAIKEANSKNIPVITIDRSANGGD----VVCHIASDNVKGGEMAAEFIAKAL----KGKGNVVELEGPGASAARDRGKGFDEAIAK-YPDIKIVAKQAADFRSKGLSVMENILQAQPKIDAVFAQNDEMALGAIKAIEAANRQG-IIVVGFDGTEDALKAIKEGKMA-ATIAQQPALMGSLGVEMADKYLKGEK-IPNFIPAELKLITKENVQ------------
9	MUSTER	2ioyA	0.224	0.832	2.400	threading_9	-----------------------------KTIGLVISTLNNPFFVTLKNGAEEKAKELGY--KIIVEDSQNDSSKELSNVEDLIQQKVDVLLINPVDSDAVVTAIKEANSKNIPVITIDRSANGGD----VVCHIASDNVKGGEMAAEFIAKALK----GKGNVVELEGPGASAARDRGKGFDEAIAK-YPDIKIVAKQAADFRSKGLSVMENILQAQPKIDAVFAQNDEMALGAIKAIEAANRQG-IIVVGFDGTEDALKAIKEGKM-AATIAQQPALMGSLGVEMADKYLKGEK-IPNFIPAELKLITKENVQ------------
10	SPARKS	3m9wa	0.177	0.865	3.256	threading_10	-----------------------------VKIGMAIDDLRLERWQKDRDIFVKKAESLGA--KVFVQSANGNEETQMSQIENMINRGVDVLVIIPYNGQVLSNVVKEAKQEGIKVLAYDRMINDAD----IDFYISFDNEKVGELQAKALVDIV-----PQGNYFLMGGPVDNNAKLFRAGQMKVLKPDSGKIKVVGDQWVDLPENALKIMENALTANNKIDAVVASNDATAGGAIQALSAQGLSGKVAISGQDADLAGIKRIAAGTQ-TMTVYKPITLLANTAAEIAVELGNGQEPKADSRLLTPIDVNKNNIKDTVIK---DGFH

Predicted Tertiary Structure


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TM-score=0.824 to 1gcgA SCOP code=c.93.1.1	TM-score=0.833 to 1gcgA SCOP code=c.93.1.1	TM-score=0.802 to 1gcgA SCOP code=c.93.1.1	TM-score=0.825 to 1gcgA SCOP code=c.93.1.1	TM-score=0.824 to 1gcgA SCOP code=c.93.1.1