Template-based Modeling Results for YPHD_ECOLI

Submitted Primary Sequence

>Length 332
MSASSLPLPQGKSVSLKQFVSRHINEIGLLVVIAILYLVFSLNAPGFISLNNQMNVLRDAATIGIAAWAMTLIIISGEIDVSVGPMVAFVSVCLAFLLQFEVPLAVACLLVLLLGALMGTLAGVLRGVFNVPSFVATLGLWSALRGMGLFMTNALPVPIDENEVLDWLGGQFLGVPVSALIMIVLFALFVFISRKTAFGRSVFAVGGNATAAQLCGINVRRVRILIFTLSGLLAAVTGILLAARLGSGNAGAANGLEFDVIAAVVVGGTALSGGRGSLFGTLLGVLVITLIGNGLVLLGINSFFQQVVRGVIIVVAVLANILLTQRSSKAKR
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MSASSLPLPQGKSVSLKQFVSRHINEIGLLVVIAILYLVFSLNAPGFISLNNQMNVLRDAATIGIAAWAMTLIIISGEIDVSVGPMVAFVSVCLAFLLQFEVPLAVACLLVLLLGALMGTLAGVLRGVFNVPSFVATLGLWSALRGMGLFMTNALPVPIDENEVLDWLGGQFLGVPVSALIMIVLFALFVFISRKTAFGRSVFAVGGNATAAQLCGINVRRVRILIFTLSGLLAAVTGILLAARLGSGNAGAANGLEFDVIAAVVVGGTALSGGRGSLFGTLLGVLVITLIGNGLVLLGINSFFQQVVRGVIIVVAVLANILLTQRSSKAKR
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCEEECCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MSASSLPLPQGKSVSLKQFVSRHINEIGLLVVIAILYLVFSLNAPGFISLNNQMNVLRDAATIGIAAWAMTLIIISGEIDVSVGPMVAFVSVCLAFLLQFEVPLAVACLLVLLLGALMGTLAGVLRGVFNVPSFVATLGLWSALRGMGLFMTNALPVPIDENEVLDWLGGQFLGVPVSALIMIVLFALFVFISRKTAFGRSVFAVGGNATAAQLCGINVRRVRILIFTLSGLLAAVTGILLAARLGSGNAGAANGLEFDVIAAVVVGGTALSGGRGSLFGTLLGVLVITLIGNGLVLLGINSFFQQVVRGVIIVVAVLANILLTQRSSKAKR
54433232342422213210120021000000000000000010210001210010021000000000000000000301001000000000000001213011000000000000000000000101020010000000000010001000211001212330111101321101110000000001000013312101000000110200210203042020000000000000000000020011211101010000000000000012103020000000000010000001001021101100100000000001111233234255
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MSASSLPLPQGKSVSLKQFVSRHINEIGLLVVIAILYLVFSLNAPGFISLNNQMNVLRDAATIGIAAWAMTLIIISGEIDVSVGPMVAFVSVCLAFLLQFEVPLAVACLLVLLLGALMGTLAGVLRGVFNVPSFVATLGLWSALRGMGLFMTNALPVPIDENEVLDWLGGQFLGVPVSALIMIVLFALFVFISRKTAFGRSVFAVGGNATAAQLCGINVRRVRILIFTLSGLLAAVTGILLAARLGSGNAGAANGLEFDVIAAVVVGGTALSGGRGSLFGTLLGVLVITLIGNGLVLLGINSFFQQVVRGVIIVVAVLANILLTQRSSKAKR
1	SPARKS	1ee4a	0.082	0.877	1.026	threading_1	ASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSVLQMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSTLVQTPALRAVGN---IVTGNDLQTQVVINAG---------------VLPALRLLLSS--------PKKEACWTISTAGNTEQIQAVIDANLIPPLVKLLEV-----AEDKT-KKEACWAISNASSGGLQ----RPDIIRYLVSQ---GCIKPLCDLLEIAD--NRIIEVTLDALENILKMGEADKEARGLN
2	PROSPECT2	1ejlI	0.109	0.964	1.491	threading_2	GTVNWS----------VEDIVKGINLESQLQATQAARKLLSREKQPPILIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLV--GVLSKADFKTQKEAAWAITNYTQIVYLVHCGIIEPLTKIIQVILDAISNIFQAAESIMIEECGS
3	HHPRED-l	2nq2_A	0.150	0.822	1.222	threading_3	-------------Y---------PKILFGLTLLLVITAVISLGIGQI----DVQQVIFQRLPRILLCVGAGLALIFHIIGVTSGSAFGG--TLA-IFF--GFSLYGLFTSTILFGFGTLALVFLFSF----SLILIGMILSGLFSALVSLLQYISDTEEKLPSIVFWLMGSFATSNWEKLLFFFVPFCSSILL---SLSWRLNLLSLDEKEAKALGVKMAPLRWLVIFLSGSLVACQ----VAISG---SIGWVGLIIPHLSRMLVGA---NHQSLLPCTMLVGATYMLLVDNVARDAEIPISILTALIGAPLFGVLVY----KL-------
4	HHPRED-g	2nq2_A	0.149	0.810	1.026	threading_4	---------------Y-------PKILFGLTLLLVITAVISLGIRYSLSVPQIQQVIFQVRLPRILT------------ALCVGAGLALSGVVLQGIFRNPLPHIIGVTSTILFGFGTLALVFLFSF----SLLMIGMILSGLFSALVSLLQISDE--EKLPSIVFWLMGSFATSNWEKLLFFFVPFLLCSS-ILLSLSWRLNLLSLDEKEAKALGVKMAPLRWLVIFLSGSLVACQVAI-------SGSIGWVGLIIPHLSRMLVGA-NHQ--SLLPCTMLVGATYML-LVDNVADAEIPISILTALIGAPLFGVLVY----KL-------
5	PROSPECT2	1ee4a	0.101	0.955	1.467	threading_5	-------------QELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQVVPRLVEMLQLEAAWALTNIASGTSAQTKVVVDAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGLLLSSPKENIKKEACWTIS--NITAGNTEQIQAVTKKEACWAISNASSGGLQRPDINRIIEVTLDALENILKMGEADKEARGLN
6	HHPRED-l	2qi9_A	0.186	0.825	1.221	threading_6	----------LTLARQQQ---RQNIRWLLSLSL-LLALLLSLSAGDWFTPRG-ELFVQIRLPRTLALVGAALAILFELLGVSNGAGVG--LIAAV-LLGQGLPGLSAIAGALIITLILLRFA----RR-HLSTLLAGVALGIISSAL-TWAIYFST-SVDLRQL-YW--GGFGGVDWRQSWL-LLIPVLLWISS---QSRP---LALGEISARQLGLPLWFWRNVLVAATGW-VGVSV----ALAG---AIGFIGLVIPHILRLSGLT----DHRVLLGCALAGASALLLADIVAAAAELPIGVVTATLGAPVFIWLLL----KA-------
7	PROSPECT2	3a6pA1	0.100	0.907	1.446	threading_7	AEKTQVGMSRLEKVYLKNSVMELIANIKDALSRIVVEMIKREWPQHWPDMIELDTLSKTQTELVMFILLRLAEDVVTFQTLPMERIFSFLLNTLQENVNDTSQESKAQANCRVGVAALNTLAGMSHITAENCKLLEILCLLGAAECLLIAVSRK----GKLEDRKPL----------MVLFGDVAMHYILSAAQTADGG------GLVEKHYVF-----------LKRLCQVLCALGNQLCALLGADSDVETPSNFGKYLESFLAFTTRHEILSRDPLLLAIIPKYLRASMTEYSRFDFDSSSRAQQGEVMRLACRLDPKTSFQMKYQLSTF
8	PROSPECT2	1xm9A	0.094	0.958	1.443	threading_8	GLTSSQDEKCFQDESAKQQVYQGICKLVDLVQQAAAGALRNLVFRS---TTNKLETRRQNGIREAVQLTGLLWNLSSTDELIADALPVLADRVIIPFSGWCVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYNCMCVLHNLSYRLDAEVPTRYRQLEYNALPEEETNPKGSGWLYHSDAIRTYLN-------LMGKSKKDATQNLTASKGLMSSGMSQLIGKGLPQIARLASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSAC--YTVRNLMA--SQPQLAKQYFSMLNNIINLCRSSASPKAAEAARL
9	PROSPECT2	1jdha	0.127	0.994	1.411	threading_9	AVVNLINDEDTNDVETARCTAGTLHNLSVLFYAITTLHNLLLHQEGAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILAGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLVQNCLWTLRNLSDAATKQEGMEGLLGTLV--QLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLAEMAQNAVRLHYGLLHPPSHWPLIKATVGLIRNLALCPAEQGAIPRLVQLLIVEGCTGALHILARDVHNRIVIRVAAGVLCELAQDKEAAEAIEAEG
10	MUSTER	3zuxA	0.147	0.861	0.831	threading_10	--------------NILSKISSFIGKTFSLWAALFAAAAFFA--PDTFKW--AGPYIPWLLGIIMFGMGLTFDILFKVVIIGVIAQFAIMPATAWCLSKLNLPAEIAVGVILVGCCPGGTASNVMTYLARGNTSVSTLTSPLLTPAIFLMLAG----EMLEIQAAGML--------MSIVKMVLLPIVLGLIVHK-VLGS---------KTEKLT----DALPLVSVAAIVLIIGAVVGASKGKIMESGLLIFAVVVLHNGIGYLLGAAKWTG--LPYDAQKALTIEVGMQNSGLAAALAAAHFVVAVPGALFSVWHNISGSLLATYWAAKA

Predicted Tertiary Structure


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TM-score=0.762 to 1t5jA SCOP code=a.209.1.1	TM-score=0.733 to 1wa5B SCOP code=a.118.1.1	TM-score=0.785 to 1ialA SCOP code=a.118.1.1	TM-score=0.736 to 1l7vA SCOP code=f.22.1.1	TM-score=0.726 to 1l7vA SCOP code=f.22.1.1