Template-based Modeling Results for YPHC_ECOLI

Submitted Primary Sequence

>Length 353
MKTMLAAYLPGNSTVDLREVAVPTPGINQVLIKMKSSGICGSDVHYIYHQHRATAAAPDKPLYQGFINGHEPCGQIVAMGQGCRHFKEGDRVLVYHISGCGFCPNCRRGFPISCTGEGKAAYGWQRDGGHAEYLLAEEKDLILLPDALSYEDGAFISCGVGTAYEGILRGEVSGSDNVLVVGLGPVGMMAMMLAKGRGAKRIIGVDMLPERLAMAKQLGVMDHGYLATTEGLPQIIAELTHGGADVALDCSGNAAGRLLALQSTADWGRVVYIGETGKVEFEVSADLMHHQRRIIGSWVTSLFHMEKCAHDLTDWKLWPRNAITHRFSLEQAGDAYALMASGKCGKVVINFPD
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MKTMLAAYLPGNSTVDLREVAVPTPGINQVLIKMKSSGICGSDVHYIYHQHRATAAAPDKPLYQGFINGHEPCGQIVAMGQGCRHFKEGDRVLVYHISGCGFCPNCRRGFPISCTGEGKAAYGWQRDGGHAEYLLAEEKDLILLPDALSYEDGAFISCGVGTAYEGILRGEVSGSDNVLVVGLGPVGMMAMMLAKGRGAKRIIGVDMLPERLAMAKQLGVMDHGYLATTEGLPQIIAELTHGGADVALDCSGNAAGRLLALQSTADWGRVVYIGETGKVEFEVSADLMHHQRRIIGSWVTSLFHMEKCAHDLTDWKLWPRNAITHRFSLEQAGDAYALMASGKCGKVVINFPD
CCCEEEEEECCCCCCEEEEECCCCCCCCEEEEEEEEEEECCHHHHHHCCCCCCCCCCCCCCCCCCEEECCCCEEEEEEECCCCCCCCCCCEEEECCCCCCCCCHHHHCCCCCCCCCCCCEECCCCCCCCCEEEEEECHHHEEECCCCCCHHHHHHHCCCHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHCCEEEEEEECCCHHHHHHHHHHHHHCCCCCHHHEEEEECHHHHHHHHHHHHCCCCEEEEEECCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MKTMLAAYLPGNSTVDLREVAVPTPGINQVLIKMKSSGICGSDVHYIYHQHRATAAAPDKPLYQGFINGHEPCGQIVAMGQGCRHFKEGDRVLVYHISGCGFCPNCRRGFPISCTGEGKAAYGWQRDGGHAEYLLAEEKDLILLPDALSYEDGAFISCGVGTAYEGILRGEVSGSDNVLVVGLGPVGMMAMMLAKGRGAKRIIGVDMLPERLAMAKQLGVMDHGYLATTEGLPQIIAELTHGGADVALDCSGNAAGRLLALQSTADWGRVVYIGETGKVEFEVSADLMHHQRRIIGSWVTSLFHMEKCAHDLTDWKLWPRNAITHRFSLEQAGDAYALMASGKCGKVVINFPD
55111001122323020220222323221000102000000000020123221222122331210000002000000100430431340110002100101201003322210020311100112211000100001230002013202121000010000000100220302121100000000000000100302202100000013310200340101100012223202200120142001000100111200110020014201000000114232210020012111010011121210220020013320203300002010310130021023331010002135
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MKTMLAAYLPGNSTVDLREVAVPTPGINQVLIKMKSSGICGSDVHYIYHQHRATAAAPDKPLYQGFINGHEPCGQIVAMGQGCRHFKEGDRVLVYHISGCGFCPNCRRGFPISCTGEGKAAYGWQRDGGHAEYLLAEEKDLILLPDALSYEDGAFISCGVGTAYEGILRGEVSGSDNVLVVGLGPVGMMAMMLAKGRGAKRIIGVDMLPERLAMAKQLGVMDHGYLATTEGLPQIIAELTHGGADVALDCSGNAAGRLLALQSTADWGRVVYIGETGKVEFEVSADLMHHQRRIIGSWVTSLFHMEKCAHDLTDWKLWPRNAITHRFSLEQAGDAYALMASGKCGKVVINFPD
1	MUSTER	2fzwA	0.248	0.972	3.429	threading_1	IKCKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTL--------SGADPEGCFPVILGHLGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQCKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGISTGYGAAVNAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQDSKPIQEVLIEMTDGGVDYSFECIGNVKVMRAALEACHGWGVSVVVGVAASGEEIATRPFQLVGRTWKGTAFGSVESVPKLVSEYMSKKIKVDEFVTHNLSFDEINKAFELMHSGKSIRTVVKI--
2	SPARKS	1heta	0.251	0.969	4.141	threading_2	IKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTLVTP---------LPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFSTGYGSAVKAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQDKKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCEAYGVSVIVGVPPDSQNLSMNPMLLLGRTWKGAIFGGKDSVPKLVADFMAKKFALDPLITHVLPFEKINEGFDLLRSGESIRTILTF--
3	PROSPECT2	1e3ja	0.263	0.969	5.020	threading_3	-DNL-SAVLYKQNDLRLEQRPIPEPKEDEVLLQMAYVGICGSDVHYYEHG-----RIADFIVKDPMVIGHEASGTVVKVGKNVKHLKKGDRVAVEPGVPCRRCQFCKEGKYNLCPDLTFCATP-PDDGNLARYYVHAADFCHKLPDNVSLEEGALLEP-LSVGVHACRRAGVQLGTTVLVIGAGPIGLVSVLAAKAYGA-FVVCTARSPRRLEVAKNCGADVTLVVDPAKEIIERIRSAIGDLPNVTIDCSGNEKCITIGINITRTGGTLMLVGMGSQMVTVPLVNACAREIDIKSVFRYC-NDYPIALEMVASGRCNVKQLVTHSFKLEQTVDAFEAARADNTIKVMISCRQ
4	PPA-I	2fzwA	0.245	0.972	3.917	threading_4	IKCKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTL--------SGADPEGCFPVILGHLGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQCKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGISTGYGAAVNAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQDSKPIQEVLIEMTDGGVDYSFECIGNVKVMRAALEACKGWGVSVVVGVAASGEEIATRPFQLVGRTWKGTAFGGVESVPKLVSEYMSKKIKVDEFVTHNLSFDEINKAFELMHSGKSIRTVVKI--
5	HHPRED-l	2d8a_A	0.279	0.904	2.165	threading_5	----VAI-KTKPGGAELVEVDVPKPGPGEVLIKVLATSICGTDLHIYEWNEWAQ-----SRIKPPQI-GHEVAGEVVEIGPGVEGIEVGDYVSVETHIVCGKCY------------TK--IFGVDTDGVFAEYAVVPAQNIWKNPKSIPPEYATLQE-PLGNAVDTV-LAGPISGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGADYVINP-FEEDVVKEV-DITDGGVDVFLEFSGAPKALEQGLQAVTPAGRVSLLGLYPGKVTIDFNNIIFKALTIYGITGRHWETWYTVSRLLQSGKLNLDPIITHKYKFDKYEEAFEL-RAGKTGKVVF----
6	HHPRED-g	2fzw_A	0.251	0.972	2.282	threading_6	IKCKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKIIATAVCHTDAY--------TLSGADPEGCFPVILGHLGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQCKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGISTGYGAAVNAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQDSKPIQEVLIEMTDGGVDYSFECIGNVKVMRAALEACKGWGVSVVVGVAASGEIATRPFQLVTGRTWKGTGWKSVESVPKLVSEYMSKKIKVDEFVTHNLSFDEINKAFELMHSGKSIRTVVKI--
7	SP3	1heta	0.251	0.969	4.190	threading_7	IKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGT--------LVTP-LPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFSTGYGSAVKAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQDKKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCEAYGVSVIVGVPPDSQNLSMNPMLLLGRTWKGAIFGGKDSVPKLVADFMAKKFALDPLITHVLPFEKINEGFDLLRSGESIRTILTF--
8	SAM-T99	1rjwA	0.276	0.943	2.597	threading_8	---MKAAVVEQFKELKIKEVEKPTISYGEVLVRIKACGVCHTDLHAAHGDWPVKP-------KLPLIPGHEGVGIVEEVGPGVTHLKVGDRVGIPWLYSCGHCDYCLSGQETLCEHQ--KNAGYSVDGGYAEYCRAAADYVVKIPDNLSFEEAAPIFCAGVTTYKALKVTGAKPGEWVAIYGIGGLGHVAVQYAKAMGLN-VVAVDIGDEKLELAKELGADLVVNPLK-EDAAKFMKEKV-GGVHAAVVTAVSKPAFQSAYNSIRRGGACVLVGLPPEEMPIPIFDTVLNGIKIIGSIVGTRKDLQEALQFAAEGKV---KTIIEVQPLEKINEVFDRMLKGQNGRVVLTL--
9	MUSTER	1axeA	0.254	0.969	3.414	threading_9	IKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGT--------LVTP-LPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLWTPQCGKCRVCKHPEGNFCLCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFSTGYGSAVKAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQDKKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQAYGVSVIVGVPPDSQNLSMNPMLLLGRTWKGAIFGSKDSVPKLVADFMAKKFALDPLITHVLPFEKINEGFDLLRSGESIRTILTF--
10	SPARKS	1f8fa	0.229	0.963	3.906	threading_10	LKDIAAVTPCKGADFELQALKIRQPQGDEVLVKVVATGMCHTDLIVRDQKYPVP---------LPAVLGHEGSGIIEAIGPNVTELQVGDHVVLSY-GYCGKCTQCNTGNPAYCSSEGNHALHFFAQSSFATYALSRENNTVKVTKDVPIELLGPLGCGIQTGAGACINLKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKTQ-DPVAAIKEITDGGVNFALESTGSPEILKQGVDALGILGKIAVVGAPQLGTTAQFDVNDLLGKTILGVVEGSKKFIPELVRLYQQGKFPFDQLVKFYA-FDEINQAAIDSRKGITLKPIIKIA-

Predicted Tertiary Structure


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TM-score=0.905 to 2fzwA SCOP code=b.35.1.2	TM-score=0.903 to 2fzwA SCOP code=b.35.1.2	TM-score=0.903 to 1axeA SCOP code=b.35.1.2	TM-score=0.969 to 1e3jA SCOP code=b.35.1.2	TM-score=0.905 to 2fzwA SCOP code=b.35.1.2