Template-based Modeling Results for YPFJ_ECOLI

Submitted Primary Sequence

>Length 287
MRWQGRRESDNVEDRRNSSGGPSMGGPGFRLPSGKGGLILLIVVLVAGYYGVDLTGLMTGQPVSQQQSTRSISPNEDEAAKFTSVILATTEDTWGQQFEKMGKTYQQPKLVMYRGMTRTGCGAGQSIMGPFYCPADGTVYIDLSFYDDMKDKLGADGDFAQGYVIAHEVGHHVQKLLGIEPKVRQLQQNATQAEVNRLSVRMELQADCFAGVWGHSMQQQGVLETGDLEEALNAAQAIGDDRLQQQSQGRVVPDSFTHGTSQQRYSWFKRGFDSGDPAQCNTFGKSI
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MRWQGRRESDNVEDRRNSSGGPSMGGPGFRLPSGKGGLILLIVVLVAGYYGVDLTGLMTGQPVSQQQSTRSISPNEDEAAKFTSVILATTEDTWGQQFEKMGKTYQQPKLVMYRGMTRTGCGAGQSIMGPFYCPADGTVYIDLSFYDDMKDKLGADGDFAQGYVIAHEVGHHVQKLLGIEPKVRQLQQNATQAEVNRLSVRMELQADCFAGVWGHSMQQQGVLETGDLEEALNAAQAIGDDRLQQQSQGRVVPDSFTHGTSQQRYSWFKRGFDSGDPAQCNTFGKSI
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCCEECCCCCEEEEECHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MRWQGRRESDNVEDRRNSSGGPSMGGPGFRLPSGKGGLILLIVVLVAGYYGVDLTGLMTGQPVSQQQSTRSISPNEDEAAKFTSVILATTEDTWGQQFEKMGKTYQQPKLVMYRGMTRTGCGAGQSIMGPFYCPADGTVYIDLSFYDDMKDKLGADGDFAQGYVIAHEVGHHVQKLLGIEPKVRQLQQNATQAEVNRLSVRMELQADCFAGVWGHSMQQQGVLETGDLEEALNAAQAIGDDRLQQQSQGRVVPDSFTHGTSQQRYSWFKRGFDSGDPAQCNTFGKSI
34233233142121232221122211211212213100000000001112111121112232223332242222321201200000010012000200441233233020000212232111213212000001111100000100110122022312000000000000100230120022122123312322222120111000000000002013331202221022002002201123123213132122212101121011003201221211211112434
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MRWQGRRESDNVEDRRNSSGGPSMGGPGFRLPSGKGGLILLIVVLVAGYYGVDLTGLMTGQPVSQQQSTRSISPNEDEAAKFTSVILATTEDTWGQQFEKMGKTYQQPKLVMYRGMTRTGCGAGQSIMGPFYCPADGTVYIDLSFYDDMKDKLGADGDFAQGYVIAHEVGHHVQKLLGIEPKVRQLQQNATQAEVNRLSVRMELQADCFAGVWGHSMQQQGVLETGDLEEALNAAQAIGDDRLQQQSQGRVVPDSFTHGTSQQRYSWFKRGFDSGDPAQCNTFGKSI
1	PROSPECT2	3ejnA	0.093	0.972	1.252	threading_1	ICNAFKRGTDGYATKKVIQADGESADQYYKWTRGSFGYYYELTLRFGDIPYSQALKYTPENDASVIDGDIIYNGNSTQWRKLINSFRLNIASEFKNIATNSPLNSLADNGQLVYLDQQGNRYPQFNAQWSGYYRRDPRLFIFSAQTNKGKTEGKPIDDFAELQQILAE----AVVRGWISGNAQTYYEKGIRASFSFYETHAKDYAGYLNENAVAQYLKEPLVDFTQASGTEEQIERIIQKYLVTFYQGYPDFRRPAGTEGTNVETAITRQFGAGN----DKINQAT
2	HHPRED-l	3c37_A	0.154	0.610	1.590	threading_2	-----------------------------------------------------------------KGFN-ISIEQEKELGNKFAEVQRYVDKVGKRLLSGARAVEFDYVFKVVKDD----------SVNAFAIPG-GRVYVHTGLLKAAD------NETELAGVLAHEINHAVARHGTQEYLVLSLVLGDN--G--SYSREYENQADFLGVET-YKA-GY---NPNGLTSFFQKLN---A----------------THPLTSERIQRVQAEIAKLPPQRYLTDETE-
3	HHPRED-g	3c37_A	0.175	0.617	1.638	threading_3	-----------------------------------------------------------------KGFN-ISIEQEKELGNFAVEIVNDPDKVGKRLLSGARAVEFDYVFKVVKDDS----------VNAFAIPG-GRVYVHTGLLKAAD------NETELAGVLAHEINHAVARHGGYSL-VLSLVLGFGKAG--SYSREYENQADFLGVET-YKA---G-Y---NPNGLTSFFQKLNA----------------THPLTSERIQRVQAEIAKLPPQRYLTDETEF
4	PROSPECT2	1bu6o2	0.106	0.819	1.251	threading_4	LCVKEGMAKNTNTGEKAVKSENGLLTTIACGPTGEVNYALEGAVFMAGASIQWLRDEMKLINDAY------------------------------DSEYFATKVQNTNGVYVVPAFTGLGAPYWDPYARGAIFGLTR-----------------GVNANHIIRATLESIAYQTRDVLEAM--QADSGIRLHALRVDGGAVANNFLMQFQSDILGTRVERPEVREVTALGAAYLAGLAVGFWQNLDELQEKAVIERRPGIETTERNYRYAGWKKA--VKRAMAWEEH-
5	HHPRED-l	3dte_A	0.142	0.589	1.437	threading_5	---------------------------------------------------------------------------PTALAA----AKAR-RELAASYGAGLGRDLDGITLTF---------GQR---DG-AYDPEHHVILINSQV-----------RPERQRFTLAHEISHALLLGDDDLLSDLH-D-EYEG---DRLEQVIETLCNVGAAALL-LLT-RFGPTGRALAELARRAAERTAPPVRSASKYSLSAGPVPDDHPAALALD------TRLPLAQDSYVRS-
6	HHPRED-g	3cqb_A	0.178	0.314	1.194	threading_6	----------------------------------------------------NASKG-ALRSVGG-VIESPRNETEHWL-----------LETVGRQAQQAGIG---PTVAIYDSADINA------FATGA-K--DSLVAVSTGLLHN-T-------RDEAEAVLAHEVSHIANG----------------------------------------------------------------------------------------------------------------
7	PROSPECT2	2fnaA	0.079	0.930	1.219	threading_7	GLFDTSPKDNKLKGLRAPLRRTGEERNYISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIGNEIKFNRLSFANLLESFEQELVKLRGVNLLPALAYAYDNLKRIKFISGSEGLLYDYLRVEDPESPLFGRAFSTVELKIEFLRRGFQEADIDFKDYEVVYWLTYFGFIYLDNKNLDFAINQTLEYAKKLILKEFENFLHGREI-ARKRYLNIRTLSKCGKWSDVKRALELEE-------------------GIEISDSEIYNYLTQLTKHSKEGEKYCPSEPL
8	HHPRED-l	3cqb_A	0.189	0.314	1.239	threading_8	-----------------------------------------------NASKG-ALRSV---------GG-VIESPRNETE-------HWLLETVGRQAQQAGIG---PTVAIYDSA----------DINAFATG-DSLVAVSTGLLHN--------TRDEAEAVLAHEVSHIANGD--T------------------------------------------------------------------------------------------------------------
9	PROSPECT2	1uuqA	0.087	0.916	1.206	threading_9	EHFGAPNEVGDRDEKSEINSAVKPAVTNGFGNYDRDMTVVLYFNNFWQWSGGMTQYMAWIEGEPVQDPNVTNEWEAFMAKSASFYRSEKAQQEYRKTLEKIITRVNSATIMSWQLANEPRPGNSQTTAHHLVSSGSEGEMGSVNDMQVFIDAHATPFDKTKPAETWPSAWEKAQNYMRAHIDVAKQLDMGSYAMDSTTEYRDNYFRGVFELMLASLEQGEPYGRTTR-----------ANYWWQEGDDFMGDPPQEEQGSTIAIMKEFNARFQP-------------
10	PROSPECT2	2qenA	0.095	0.920	1.178	threading_10	MLFDLRPKTRRLENYPGIRRRPGILIDCRELYAERGHITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEEELLALFAYAYDSLPNLKIILTGSEVGLDFLKITDYESPLYGRIAGEVLVKVEFLKRGFREVNLDVPENEIEEAVVVFGVEYLRNGDFGRAMKRTLEVAKGLIMGELEELRRRSPRYVDILRAIALGYN---RWSLIRDYLAV--------------------KGTKIPEPRLYALLENLKKMNWIVEEDNTYKRI

Predicted Tertiary Structure


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TM-score=0.601 to 3ejnA SCOP code=a.118.8.6	TM-score=0.447 to 1xm5A SCOP code=d.92.1.15	TM-score=0.454 to 1xm5A SCOP code=d.92.1.15	TM-score=0.530 to 1huxA SCOP code=c.55.1.5	TM-score=0.383 to 1s9hA SCOP code=c.37.1.20