Template-based Modeling Results for YPFG_ECOLI

Submitted Primary Sequence

>Length 347
MRYRIFLLFFFALLPTSLVWAAPAQRAFSDWQVTCNNQNFCVARNTGDHNGLVMTLSRSAGAHTDAVLRIERGGLKSPEASEGEIAPRLLLDGEPLALSGDKWRISPWLLVTDDTATITAFLQMIQEGKAITLRDGDQTISLSGLKAALLFIDAQQKRVGSETAWIKKGDEPPLSVPPAPALKEVAVVNPTPTPLSLEERNDLLDYGNWRMNGLRCSLDPLRREVNVTALTDDKALMMISCEAGAYNTIDLAWIVSRKKPLASRPVRLRLPFNNGQETNELELMNATFDEKSRELVTLAKGRGLSDCGIQARWRFDGQRFRLVRYAAEPTCDNWHGPDAWPTLWITR
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MRYRIFLLFFFALLPTSLVWAAPAQRAFSDWQVTCNNQNFCVARNTGDHNGLVMTLSRSAGAHTDAVLRIERGGLKSPEASEGEIAPRLLLDGEPLALSGDKWRISPWLLVTDDTATITAFLQMIQEGKAITLRDGDQTISLSGLKAALLFIDAQQKRVGSETAWIKKGDEPPLSVPPAPALKEVAVVNPTPTPLSLEERNDLLDYGNWRMNGLRCSLDPLRREVNVTALTDDKALMMISCEAGAYNTIDLAWIVSRKKPLASRPVRLRLPFNNGQETNELELMNATFDEKSRELVTLAKGRGLSDCGIQARWRFDGQRFRLVRYAAEPTCDNWHGPDAWPTLWITR
CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCEEEEECCCCCCEEEEEEEECCCCCCEEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCEEEECCCHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEEECCCCCCCCCEEEEECCCCCCCCEEEEECCCCCCCCCCCCEEEEEEEECCCCCEEEEEECCCCCCCCCCCEEEEEECCEEEEEEEECCCCCCCCCCCCCCCCCEECC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MRYRIFLLFFFALLPTSLVWAAPAQRAFSDWQVTCNNQNFCVARNTGDHNGLVMTLSRSAGAHTDAVLRIERGGLKSPEASEGEIAPRLLLDGEPLALSGDKWRISPWLLVTDDTATITAFLQMIQEGKAITLRDGDQTISLSGLKAALLFIDAQQKRVGSETAWIKKGDEPPLSVPPAPALKEVAVVNPTPTPLSLEERNDLLDYGNWRMNGLRCSLDPLRREVNVTALTDDKALMMISCEAGAYNTIDLAWIVSRKKPLASRPVRLRLPFNNGQETNELELMNATFDEKSRELVTLAKGRGLSDCGIQARWRFDGQRFRLVRYAAEPTCDNWHGPDAWPTLWITR
53111000000000000002113132212101000102210001102342000000012122423010201102242332332322000001332111103314221221223222001100211342210202222110012002000000133252211310001203321220121120331212322222122321210131122223224022332332010010234200000001000111110000013433221200102222332432221100101013432200100212111101110101020310100210232203212113211111124
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MRYRIFLLFFFALLPTSLVWAAPAQRAFSDWQVTCNNQNFCVARNTGDHNGLVMTLSRSAGAHTDAVLRIERGGLKSPEASEGEIAPRLLLDGEPLALSGDKWRISPWLLVTDDTATITAFLQMIQEGKAITLRDGDQTISLSGLKAALLFIDAQQKRVGSETAWIKKGDEPPLSVPPAPALKEVAVVNPTPTPLSLEERNDLLDYGNWRMNGLRCSLDPLRREVNVTALTDDKALMMISCEAGAYNTIDLAWIVSRKKPLASRPVRLRLPFNNGQETNELELMNATFDEKSRELVTLAKGRGLSDCGIQARWRFDGQRFRLVRYAAEPTCDNWHGPDAWPTLWITR
1	PROSPECT2	1m1xa4	0.087	0.925	1.476	threading_1	VPSASSRMFLLVGAPKANTTQPGIVEGGQVLKCDWSSTRRCQPIEFDATGNRDYADPLEFKSHQWFGASVRSKQTEMKQEREPVGTCFLQDGTKTVEYAPCRSQDIDADGQGFC-----------QGGFSIDFTKADRVLLGGPGSFYW-----------QGQLISDQVAEIVSKYDPNV----YSIKYNNQLATRTAQAIFDDSYLGYSVAVGDFNGDGIDDMVYIYDGKNMSSLYNFTGEQMAAYFGFSVAATDINGDDYADVFIGAPLFMDRGSDGKLQEVGQVSRASGDFQTTKLNGFEVFAKGIVYIFNGRSTGLNVPSQILEGQWAARSMPPSFGYLYRAR
2	HHPRED-l	3dtd_A	0.177	0.357	1.769	threading_2	----------------------SLTETYGLWSINCGIQKVCFMHRQNDQRVVAMSVVLNAD--GVVSGNLTVPF----GILV-SKPVRLQVDEGAVGIRTC-VPAGCIVPIVFD----KNYVAALRAGKHLKLAIGEPPVQLNGFSNALNRLIALQKE---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3	HHPRED-g	3dtd_A	0.168	0.360	2.209	threading_3	----------------------SLTETYGLWSINCGIQKVCFMHRQENDQVVAMSVVLN--ADGVVSGNLTV-PFG---ILV-SKPVRLQVDEGAVETGIRTVPAGCIVPIVFDK----NYVAALRAGKHLKLAIGEPPVQLNGFSNALNRLIALQKE---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4	PROSPECT2	1maeH	0.076	0.911	1.448	threading_4	SSASAAAAAAAAALAAGAADGPTNDEAPGAQWVLDAGSGSILGFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLL--SSPTCYHIHPGAPSTFYLLCAQGGLAKT------DHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL-------GHDVDAISVAQDGGPDLYALSAGTEVL--------HIYDAGAGDQDQS--------TVELGSGPQVLSVA
5	PROSPECT2	3k6sA2	0.067	0.939	1.436	threading_5	FN-----------LDTEELTAFRVDSAGNSWVVQCGSTGACEPIGLPEAVNMSLGLSLASTTSPSQLLACGPTVHHECGRNMYLTGLCFLLGPTQLTQRLPVSRQECPRGTETTS----------SSSFELEMAQEGFSAVFTPDGPVLGAVGSFTWSPPNMSPTFINMSQENVDMRDSYLGYSTELALWKGVQPRYQHTGKAVIFTQVSRQTGTQIGSYFGASLCSVDVDSDGSTDLVLIGAPHYYEQTVSVCPLPRGWRRWWCDAVLYGEQGHPWGRAALTVLGDVNGDKLTDVVIGAPGEEENRGAVYLFHGVLGPSISPSHSQRIAGSQLSSRLQYQVLLLRT
6	PROSPECT2	2w5nA	0.085	0.844	1.412	threading_6	-------------------AMKPAGKTFSNVEIFDPPTNYTWENYSPEPPNVWFPIVKSKDGGKTWKEISKVK--DTQNNWGLRYQPQLYELPRAFGKYPKGTVLCSGSSIPSDLSETLIEVYASRDKSHVALGGEAPFLMTYKEKLILYYSDQRDNATHSQKLVHQTTTDLKK---WSKVVDDTKYADYYARPG----------------------------MPTVAKLPNNEYIYVYEYGGGPNPPAGYYRLSKDPQKFLNKAHHQIVSNDGTTPAGSPYVVWTPYGGKNGTIVVSCGTRSQPTAYTRSLLTFQKDPDLLMIMGAGILPPA--GGKNTVSASVKS
7	PROSPECT2	1kb0a2	0.090	0.991	1.383	threading_7	TGPAAQAAAAVQRVDGDFIRANAARTPVDGIMYVSASWSVVHAIDTRTGNRIWTRLIALDAATGKEVWHQNTFEGQKGSAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYWHYQETPGDNWDYTSTQPMIVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTANAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNGGAPSTYMVDGRQYVSVAVGLAARATERQGPG---TVYTPE
8	MUSTER	3u4yA	0.118	0.882	0.736	threading_8	SNFGIVVEQHLRRISFFSTDTLEILNQIYDVDTAITSDCSNVVVTSDFCQTLVQIET---QLEPPKVVAIQEGQSSADVDITPDDQFAVTVTGLNHPFNQSYSFLKNKFISTIPIPYDAVGIAISPNGNILIDRSSANTVRR-------FKIDADGVLFDTGQEFISGGTRP-FNITFTPDGNFAFVANLIGNSIG------ILE-TQNPENITLLNAVGTNNLPGTIVVSRDGSTVYVLTEST-----VDVFNFNQLSGTLSFVKSFGHGLL--IDPRPLFGANQALNKTETKLFISANI-------SRELKVFTGKVVGYVAGIEANGGIAICHPD---------
9	SPARKS	2qc5a	0.136	0.807	0.570	threading_9	-------------------SEAWMNFYLEEFNLS-IPDSGPYGITSSEDGKVWFTQ-----HKANKISSLDQGRIKEFEVPTPDAKVMCLILGDIWFTENGANKI--GKLSKKGGFTEYPLPQPDSGPYGITELNGDIWFTQLN-----------GDRIGKLTA---DGTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITNTGKLEEYPLPTNAAAPVGITSGNDGALWFVE------IMGNKIGRITTT----GEISEYDIPTPNAR------PHAITAG-KNSEIWFTEWGAN-------QIGRIDNTIQEYQLQTENAEPHGITGKDG--SVWFAL
10	PROSPECT2	3b7fA	0.052	0.824	1.363	threading_10	--------------------SAPESGPVRTWELRGPVFLGHTIHHIVQDTLGPTVFRSDDGGGNWTEATRPPAFNKAPGRVVDHVFWLTPGHASEPGT----------------------WYAGTSPQGLFRSTDHGASWEPVAGFNDHPRRAWTGGEPDGPKHSILVDPRDPKHLYIGSSGGVFESTDAGTDWKPLNR-------GCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQN-------HCGIYRDRREGVWKRI-----GDAPREVGDIGFPIVVHQRDPRTVWVFPDGSDVWPRVSPGGKPAVYAGESWQRQDRGLPTDQAWLTVKRQATADAHAP

Predicted Tertiary Structure


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TM-score=0.633 to 1l5gA SCOP code=b.1.15.1	TM-score=0.404 to 2d9qB SCOP code=b.1.1.3	TM-score=0.412 to 3b5hA SCOP code=b.1.1.4	TM-score=0.634 to 1vyhT SCOP code=b.69.4.1	TM-score=0.623 to 1kitA SCOP code=b.29.1.8