Template-based Modeling Results for YPDE_ECOLI

Submitted Primary Sequence

>Length 345
MDLSLLKALSEADAIASSEQEVRQILLEEADRLQKEVRFDGLGSVLIRLNESTGPKVMICAHMDEVGFMVRSISREGAIDVLPVGNVRMAARQLQPVRITTREECKIPGLLDGDRQGNDVSAMRVDIGARSYDEVMQAGIRPGDRVTFDTTFQVLPHQRVMGKAFDDRLGCYLLVTLLRELHDAELPAEVWLVASSSEEVGLRGGQTATRAVSPDVAIVLDTACWAKNFDYGAANHRQIGNGPMLVLSDKSLIAPPKLTAWVETVAAEIGVPLQADMFSNGGTDGGAVHLTGTGVPTVVMGPATRHGHCAASIADCRDILQMQQLLSALIQRLTRETVVQLTDFR
123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MDLSLLKALSEADAIASSEQEVRQILLEEADRLQKEVRFDGLGSVLIRLNESTGPKVMICAHMDEVGFMVRSISREGAIDVLPVGNVRMAARQLQPVRITTREECKIPGLLDGDRQGNDVSAMRVDIGARSYDEVMQAGIRPGDRVTFDTTFQVLPHQRVMGKAFDDRLGCYLLVTLLRELHDAELPAEVWLVASSSEEVGLRGGQTATRAVSPDVAIVLDTACWAKNFDYGAANHRQIGNGPMLVLSDKSLIAPPKLTAWVETVAAEIGVPLQADMFSNGGTDGGAVHLTGTGVPTVVMGPATRHGHCAASIADCRDILQMQQLLSALIQRLTRETVVQLTDFR
CCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCEEEEECCCCEEEEECCCCCCEEEEEEECCCCCCCCEEECCCCCEEEEECCCCCHHHCCCEEEEEEECCCCEEEEEEECCCCCCCCHHEEEEECCCCHHHHHHHCCCCCCEEEECCCEEEECCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCEEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHCCCCCEEEECCCCCCCCCHHEEEEHHHHHHHHHHHHHHHHHCCHHHHHHHHCCC
123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MDLSLLKALSEADAIASSEQEVRQILLEEADRLQKEVRFDGLGSVLIRLNESTGPKVMICAHMDEVGFMVRSISREGAIDVLPVGNVRMAARQLQPVRITTREECKIPGLLDGDRQGNDVSAMRVDIGARSYDEVMQAGIRPGDRVTFDTTFQVLPHQRVMGKAFDDRLGCYLLVTLLRELHDAELPAEVWLVASSSEEVGLRGGQTATRAVSPDVAIVLDTACWAKNFDYGAANHRQIGNGPMLVLSDKSLIAPPKLTAWVETVAAEIGVPLQADMFSNGGTDGGAVHLTGTGVPTVVMGPATRHGHCAASIADCRDILQMQQLLSALIQRLTRETVVQLTDFR
432210210040301122132012001210340231020111000002134322120000000321112111024311010011120322112110010113332300000113442431210100110321320132113111200011202112311000200101000000010022023231302000000122312120010113212210000001001132132222332311300000011212101230010011002322020000003210110000011112020000000031110100000030022002001100330133112312324
123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MDLSLLKALSEADAIASSEQEVRQILLEEADRLQKEVRFDGLGSVLIRLNESTGPKVMICAHMDEVGFMVRSISREGAIDVLPVGNVRMAARQLQPVRITTREECKIPGLLDGDRQGNDVSAMRVDIGARSYDEVMQAGIRPGDRVTFDTTFQVLPHQRVMGKAFDDRLGCYLLVTLLRELHDAELPAEVWLVASSSEEVGLRGGQTATRAVSPDVAIVLDTACWAKNFDYGAANHRQIGNGPMLVLSDKSLIAPPKLTAWVETVAAEIGVPLQADMFSNGGTDGGAVHLTGTGVPTVVMGPATRHGHCAASIADCRDILQMQQLLSALIQRLTRETVVQLTDFR
1	MUSTER	1xfoA	0.314	0.968	2.595	threading_1	VDYELLKKVVEAPGVSGYEFLIRDVVIEEIKDYVDEVKVDKLGNVIAHKKGE-GPKVMIAAHMDQIGLMVTHIEKNGFLRVAPIGGVDPKTLIAQRFKVWIDKGKFIYGVGA-SVPAPDWDQIFIDIGAESKEEAEDMGVKIGTVITWDGRLERLGKHRFVSIAFDDRIAVYTILEVAKQLKD--AKADVYFVATVQEEVGLRGARTSAFGIEPDYGFAIDVTIAADIPGTPEKQVTHLGKGTAIKIMDRSVICHPTIVRWLEELAKKHEIPYQLEILLGGGTDAGAIHLTKAGVPTGALSVPARYIHSNTEVVDERDVDATVELMTKALENIHELKI-------
2	SPARKS	1xfoa	0.311	0.968	5.492	threading_2	VDYELLKKVVEAPGVSGYEFLIRDVVIEEIKDYVDEVKVDKLGNVIAHKKGE-GPKVMIAAHMDQIGLMVTHIEKNGFLRVAPIGGVDPKTLIAQRFKVWIDKGKFIYGVGA-SVPAPDWDQIFIDIGAESKEEAEDMGVKIGTVITWDGRLERLGKHRFVSIAFDDRIAVYTILEVAKQL--KDAKADVYFVATVQEEVGLRGARTSAFGIEPDYGFAIDVTIAADIPGTPEHKVTHLGKGTAIKIMDRSVICHPTIVRWLEELAKKHEIPYQLEILLGGGTDAGAIHLTKAGVPTGALSVPARYIHSNTEVVDERDVDATVELMTKALENIHELKI-------
3	PROSPECT2	3kl9A	0.305	0.968	5.083	threading_3	SLFSKIKEVTELAAVSGHEAPVRAYLREKLTPHVDEVVTDGLGGIFGIKEAVDAPRVLVASHMDEVGFMVSEIKPDGTFRVVEIGGWNPMVVSSQRFKLLTRDGHEIPVIS-----GPAIADIVFDGGFADKAEAESFGIRPGDTIVPDSSAILTNEKNIISKAWDNRYGVLMVSELAEALSGQKLGNELYLGSNVQEEVGLRGAHTSTTKFDPEVFLAVDCSPAGDVYG----GQGKIGDGTLIRFYDPGHLLLPGMKDFLLTTAEEAGIKYQYYCGK-GGTDAGAAHLKNGGVPSTTIGVCARYIHSHQTLYAMDDFLEAQAFLQALVKKLDRSTVDLIKHY-
4	PPA-I	1xfoA	0.311	0.968	3.326	threading_4	VDYELLKKVVEAPGVSGYEFLIRDVVIEEIKDYVDEVKVDKLGNVIAHKKG-EGPKVMIAAHMDQIGLMVTHIEKNGFLRVAPIGGVDPKTLIAQRFKVWIDKGKFIYGVGA-SVPAPDWDQIFIDIGAESKEEAEDMGVKIGTVITWDGRLERLGKHRFVSIAFDDRIAVYTILEVAKQL--KDAKADVYFVATVQEEVGLRGARTSAFGIEPDYGFAIDVTIAADIPGTPEHKVTHLGKGTAIKIMDRSVICHPTIVRWLEELAKKHEIPYQLEILLGGGTDAGAIHLTKAGVPTGALSVPARYIHSNTEVVDERDVDATVELMTKALENIHELKI-------
5	HHPRED-l	1ylo_A	0.982	0.962	3.307	threading_5	-DLSLLKALSEADAIASSEQEVRQILLEEAARLQKEVRFDGLGSVLIRLNESTGPKV-ICAH-DEVGF-VRSISREGAIDVLPVGNVR-AARQLQPVRITTREECKIPGLLDGDRQGNDVSA-RVDIGARTYDEV-QAGIRPGDRVTFDTTFQVLPHQRV-GKAFDDRLSCYLLVTLLRELHDAELPAEVWLVASSSEEVGLRGGQTATRAVSPDVAIVLDTACWAKNFDYGAANHRQIGNGP-LVLSDKSLIAPPKLTAWIETVAAEIGVPLQAD-FSNGGTDGGAVHLTGTGVPTLV-GPATRHGHCAASIADCRDILQ-EQLLSALIQRLTRETVVQLTDF-
6	HHPRED-g	3kl9_A	0.307	0.945	4.251	threading_6	MTFSKIKEVTELAAVSGHEAPVRAYLREKLTPHVDEVVTDGLGGIFGIKHSEDAPRVLVASHMDEVGFMVSEIKPDGTFRVVEIGGWNPMVVSSQRFKLLTRDG-------------PAIADIVFDGGFADKAEAESFGIRPGDTIVPDSSAILTANKNIISKAWDNRYGVLMVSELAEALSGQKLGNELYLGSNVQEEVGLRGAHTSTTKFDPEVFLAVDCSPAGDVYGG----QGKIGDGTLIRFYDPGHLLLPGMKDFLLTTAEEAGIKYQYYC-GKGGTDAGAAHLKNGGVPSTTIGVCARYIHSHQTLYAMDDFLEAQAFLQALVKKLDRSTVDLIKHY-
7	SP3	1yloa	0.925	0.968	5.599	threading_7	ADLSLLKALSEADAIASSEQEVRQILLEEAARLQKEVRFDGLGSVLIRLNESTGP-KVICAH-DEVGF-VRSISREGAIDVLPVGNVRAARQ-LQPVRITTREECKIPGLLDGDRQG-NDVSARVDIGARTYDEVQA-GIRPGDRVTFDTTFQVLPHQ-RVGKAFDDRLSCYLLVTLLRELHDAELPAEVWLVASSSEEVGLRGGQTATRAVSPDVAIVLDTACWAKNFDYGAANHRQIGNGPLV-LSDKSLIAPPKLTAWIETVAAEIGVPLQADF-SNGGTDGGAVHLTGTGVPTL-VGPATRHGHCAASIADCRDILQE-QLLSALIQRLTRETVVQLTDFR
8	SAM-T99	1xfoA	0.317	0.942	4.382	threading_8	VDYELLKKVVEAPGVSGYEFLIRDVVIEEIKDYVDEVKVDKLGNVIAHKKGEG-PKVMIAAHMDQIGLMVTHIEKNGFLRVAPIGGVDPKTLIAQRFKVWIDKGKFIYGVG-----APDWDQIFIDIGAESKEEAEDMGVKIGTVITWDGRLERLGKHRFVSIAFDDRIAVYTILEVAKQLK--DAKADVYFVATVQEEVGLRGARTSAFGIEPDYGFAIDVTIAADIPGTPEHKQVHLGKGTAIKIMDRSVICHPTIVRWLEELAKKHEIPYQLEILLGGGTDAGAIHLTKAGVPTGALSVPARYIHSNTEVVDERDVDATVELMTKALENI------------
9	MUSTER	3kl9A	0.308	0.968	2.555	threading_9	MTFSKIKEVTELAAVSGHEAPVRAYLREKLTPHVDEVVTDGLGGIFGIKHSEAAPRVLVASHMDEVGFMVSEIKPDGTFRVVEIGGWNPMVVSSQRFKLLTRDGHEIPVIS-----GPAIADIVFDGGFADKAEAESFGIRPGDTIVPDSSAILTNEKNIISKAWDNRYGVLMVSELAEALSGQKLGNELYLGSNVQEEVGLRGAHTSTTKFDPEVFLAVDCSPAGDVYG----GQGKIGDGTLIRFYDPGHLLLPGMKDFLLTTAEEAGIKYQYYCGK-GGTDAGAAHLKNGGVPSTTIGVCARYIHSHQTLYAMDDFLEAQAFLQALVKKLDRSTVDLIKHY-
10	SPARKS	1yloa	0.922	0.968	5.301	threading_10	ADLSLLKALSEADAIASSEQEVRQILLEEAARLQKEVRFDGLGSVLIRLNESTGPKVICA--HDEVG-FVRSISREGAIDVLPVGNVRAA-RQLQPVRITTREECKIPGLLDGDRQG-NDVSARVDIGARTYDEVQA-GIRPGDRVTFDTTFQVLPHQ-RVGKAFDDRLSCYLLVTLLRELHDAELPAEVWLVASSSEEVGLRGGQTATRAVSPDVAIVLDTACWAKNFDYGAANHRQIGNGPLV-LSDKSLIAPPKLTAWIETVAAEIGVPLQADF-SNGGTDGGAVHLTGTGVPTL-VGPATRHGHCAASIADCRDILQE-QLLSALIQRLTRETVVQLTDFR

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.962 to 1xfoA SCOP code=b.49.3.1	TM-score=0.964 to 1xfoA SCOP code=b.49.3.1	TM-score=0.963 to 1xfoA SCOP code=b.49.3.1	TM-score=0.922 to 1xfoA SCOP code=b.49.3.1	TM-score=0.964 to 1xfoA SCOP code=b.49.3.1