Template-based Modeling Results for YPDC_ECOLI

Submitted Primary Sequence

>Length 285
MKAPGLPADQQFFADLFSGLVLNPQLLGRVWFASQPASLPVGSLCIDFPRLDIVLRGEYGNLLEAKQQRLVEGEMLFIPARAANLPVNNKPVMLLSLVFAPTWLGLSFYDSRTTSLLHPARQIQLPSLQRGEGEAMLTALTHLSRSPLEQNIIQPLVLSLLHLCRSVVNMPPGNSQPRGDFLYHSICNWVQDNYAQPLTRESVAQFFNITPNHLSKLFAQHGTMRFIEYVRWVRMAKARMILQKYHLSIHEVAQRCGFPDSDYFCRVFRRQFGLTPGEYSARFQG
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280

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Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MKAPGLPADQQFFADLFSGLVLNPQLLGRVWFASQPASLPVGSLCIDFPRLDIVLRGEYGNLLEAKQQRLVEGEMLFIPARAANLPVNNKPVMLLSLVFAPTWLGLSFYDSRTTSLLHPARQIQLPSLQRGEGEAMLTALTHLSRSPLEQNIIQPLVLSLLHLCRSVVNMPPGNSQPRGDFLYHSICNWVQDNYAQPLTRESVAQFFNITPNHLSKLFAQHGTMRFIEYVRWVRMAKARMILQKYHLSIHEVAQRCGFPDSDYFCRVFRRQFGLTPGEYSARFQG
CCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEEECCEEEEECCCEEEEECCCCCEEEECCCCCEEEEEEECHHHHHHHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MKAPGLPADQQFFADLFSGLVLNPQLLGRVWFASQPASLPVGSLCIDFPRLDIVLRGEYGNLLEAKQQRLVEGEMLFIPARAANLPVNNKPVMLLSLVFAPTWLGLSFYDSRTTSLLHPARQIQLPSLQRGEGEAMLTALTHLSRSPLEQNIIQPLVLSLLHLCRSVVNMPPGNSQPRGDFLYHSICNWVQDNYAQPLTRESVAQFFNITPNHLSKLFAQHGTMRFIEYVRWVRMAKARMILQKYHLSIHEVAQRCGFPDSDYFCRVFRRQFGLTPGEYSARFQG
554321222230002001000222320110000232220221110020010000020100000332202023010000113100001134212000000012000100110111210121221212221211021002001211322211200110010002002101322323232412100210020013103330213100410200121002000320412012001101011012014423220220023011210310020013213101221133235
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MKAPGLPADQQFFADLFSGLVLNPQLLGRVWFASQPASLPVGSLCIDFPRLDIVLRGEYGNLLEAKQQRLVEGEMLFIPARAANLPVNNKPVMLLSLVFAPTWLGLSFYDSRTTSLLHPARQIQLPSLQRGEGEAMLTALTHLSRSPLEQNIIQPLVLSLLHLCRSVVNMPPGNSQPRGDFLYHSICNWVQDNYAQPLTRESVAQFFNITPNHLSKLFAQHGTMRFIEYVRWVRMAKARMILQKYHLSIHEVAQRCGFPDSDYFCRVFRRQFGLTPGEYSARFQG
1	MUSTER	3gbgA	0.099	0.888	2.352	threading_1	----------------------KKSFQTNVYRMSKFDTYIFNNLYINDYKMFWIDSGIAKLIDCLVSYEINSSSIILLKKNSIQRFSLDENINVSVITISDSFIR---SLKSYILGNKDLLLWNCEHNDIAVLSEVVNGFR---EINYSDEFLKVFFSGFFSKVEKKYNSIFITDDL---DAMEKISCLVKSDITRNWRWADICGELRTNRMILKKELESR-GVKFRELINSIRISYSISLMKTGEFKIKQIAYQSGFASVSYFSTVFKSTMNVAPSEYLFMLTG
2	SPARKS	3gbga	0.107	0.888	3.590	threading_2	----------------------KKSFQTNVYRMSKFDTYIFNNLYINDYKMFWIDSGIAKLIDCLVSYEINSSSIILLKKNSIQRFSLDENINVSVITISDSFIRSLKSY---ILGNKDLLLWNCEHNDIAVLSEVVNGFREINYS------DEFLKVFFSGFFSKVEKKYNSIFITDDLDAMEKISCLVKSDITRNWRWADICGELRTNRMILKKELESR-GVKFRELINSIRISYSISLMKTGEFKIKQIAYQSGFASVSYFSTVFKSTMNVAPSEYLFMLTG
3	PROSPECT2	3gbgA	0.107	0.888	3.574	threading_3	KKS----------------------FQTNVYRMSKFDTYIFNNLYINDYKMFWIDSGIAKLIDKNVSYEINSSSIILLKKNSIQRFSSDENINVSVITISDSFI------RSLKSYILGNKDLLLWNCEHNDIAVLSEVVNGFREINYSDEFLKVFFSGFFSKV---EKKYNSIFITDDLDAMEKISCLVKSDITRNWRWADICGELRTNRMILKKELES-RGVKFRELINSIRISYSISLMKTGEFKIKQIAYQSGFASVSYFSTVFKSTMNVAPSEYLFMLTG
4	PPA-I	3gbgA	0.106	0.891	3.149	threading_4	----------------------KKSFQTNVYRMSKFDTYIFNNLYINDYKMFWIDSGIAKLIDCLVSYEINSSSIILLKKNSIQRFSLSDENINVSVITISDSFIRSLKSYILGNKDLLLWNCEH-----NDIAVLSEVVNGFREINYSDEFLKVFFSGFFSKVEKKYNSIFITDDL---DAMEKISCLVKSDITRNWRWADICGELRTNRMILKKELESR-GVKFRELINSIRISYSISLMKTGEFKIKQIAYQSGFASVSYFSTVFKSTMNVAPSEYLFMLTG
5	HHPRED-l	3gbg_A	0.098	0.856	4.040	threading_5	-----------------------KKSFQTNVRMSKFDTYIFNNLYINDYKMFWIDSGIAK-LIDKVSYEINSSSIILLKKNSIQRFSLDENINVSVITISDSFIRSLKSYILG---------LNCEHND---IAVLSEVVNGFREINYSDEFLKVFFSGFFSKVEKKYNS---IFITDDLDAMEKISCLVKSDITRNWRWADICGELRTNRMILKKELE-SRGVKFRELINSIRISYSISLMKTGEFKIKQIAYQSGFASVSYFSTVFKSTMNVAPSEYLFMLT-
6	HHPRED-g	3gbg_A	0.105	0.870	3.604	threading_6	----------------------KKSFQTNVYRMSKFDTYIFNNLYINDYKMFWIDSGIAK-LIDKVSYEINSSSIILLKKNSIQRFSLDENINVSVITISDSFIRSLKSYILG-------LLWNCEHNDIAVLSEVVNGF---REINYSDEFLKVFFSGFFSKVEKKYNSI---FITDDLDAMEKISCLVKSDITRNWRWADICGELRTNRMILKKELE-SRGVKFRELINSIRISYSISLMKTGEFKIKQIAYQSGFASVSYFSTVFKSTMNVAPSEYLFMLTG
7	SP3	3gbga	0.106	0.891	3.616	threading_7	----------------------KKSFQTNVYRMSKFDTYIFNNLYINDYKMFWIDSGIAKLIDKNVSYEINSSSIILLKKNSIQRFSLSDENINVSVITISDSFIRSLKSYILGNKDLLLWNCEHN-----DIAVLSEVVNGFREINYSDEFLKVFFSGFFSKVEKKYNSIFITDDL---DAMEKISCLVKSDITRNWRWADICGELRTNRMILKKELESR-GVKFRELINSIRISYSISLMKTGEFKIKQIAYQSGFASVSYFSTVFKSTMNVAPSEYLFMLTG
8	SAM-T99	2k9sA	0.304	0.358	2.797	threading_8	-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DNRVREACQYISDHLADSFDIASVAQHVCLSPSRLSHLFRQQLGISVLSWREDQRISQAKLLLSTTRMPIATVGRNVGFDDQLYFSRVFKKCTGASPSEFRA----
9	MUSTER	2k9sA	0.292	0.372	1.323	threading_9	----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MDNRVREACQYISDHLADSFDIASVAQHVCLSPSRLSHLFRQQLGISVLSWREDQRISQAKLLLSTTRMPIATVGRNVGFDDQLYFSRVFKKCTGASPSEFRAGCE-
10	SPARKS	2k9sa	0.292	0.372	2.180	threading_10	----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MDNRVREACQYISDHLADSFDIASVAQHVCLSPSRLSHLFRQQLGISVLSWREDQRISQAKLLLSTTRMPIATVGRNVGFDDQLYFSRVFKKCTGASPSEFRAGCE-

Predicted Tertiary Structure


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TM-score=0.484 to 1xjaC SCOP code=b.82.4.1	TM-score=0.495 to 1xjaC SCOP code=b.82.4.1	TM-score=0.488 to 1xjaC SCOP code=b.82.4.1	TM-score=0.487 to 1xjaC SCOP code=b.82.4.1	TM-score=0.487 to 1xjaC SCOP code=b.82.4.1