Template-based Modeling Results for YPDB_ECOLI

Submitted Primary Sequence

>Length 244
MKVIIVEDEFLAQQELSWLIKEHSQMEIVGTFDDGLDVLKFLQHNRVDAIFLDINIPSLDGVLLAQNISQFAHKPFIVFITAWKEHAVEAFELEAFDYILKPYQESRITGMLQKLEAAWQQQQTSSTPAATVTRENDTINLVKDERIIVTPINDIYYAEAHEKMTFVYTRRESYVMPMNITEFCSKLPPSHFFRCHRSFCVNLNKIREIEPWFNNTYILRLKDLDFEVPVSRSKVKEFRQLMHL
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MKVIIVEDEFLAQQELSWLIKEHSQMEIVGTFDDGLDVLKFLQHNRVDAIFLDINIPSLDGVLLAQNISQFAHKPFIVFITAWKEHAVEAFELEAFDYILKPYQESRITGMLQKLEAAWQQQQTSSTPAATVTRENDTINLVKDERIIVTPINDIYYAEAHEKMTFVYTRRESYVMPMNITEFCSKLPPSHFFRCHRSFCVNLNKIREIEPWFNNTYILRLKDLDFEVPVSRSKVKEFRQLMHL
CEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCEEEEEECCEEEEEECCEEEEEEECCCEEEEEECCCEEEECCCHHHHHHHCCCCCEEEECHHHEEEHHHHHHEEECCCCEEEEEECCCCEEEEECHHHHHHHHHHHCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MKVIIVEDEFLAQQELSWLIKEHSQMEIVGTFDDGLDVLKFLQHNRVDAIFLDINIPSLDGVLLAQNISQFAHKPFIVFITAWKEHAVEAFELEAFDYILKPYQESRITGMLQKLEAAWQQQQTSSTPAATVTRENDTINLVKDERIIVTPINDIYYAEAHEKMTFVYTRRESYVMPMNITEFCSKLPPSHFFRCHRSFCVNLNKIREIEPWFNNTYILRLKDLDFEVPVSRSKVKEFRQLMHL
1100002122200310020044123110001022022002003323000000002012120010021014214300000000122100100203000000211232202100220121123332222322212433210001223200102011000010242100000242101022303200330232200100400000031031022223220002023232201003210320241144
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MKVIIVEDEFLAQQELSWLIKEHSQMEIVGTFDDGLDVLKFLQHNRVDAIFLDINIPSLDGVLLAQNISQFAHKPFIVFITAWKEHAVEAFELEAFDYILKPYQESRITGMLQKLEAAWQQQQTSSTPAATVTRENDTINLVKDERIIVTPINDIYYAEAHEKMTFVYTRRESYVMPMNITEFCSKLPPSHFFRCHRSFCVNLNKIREIEPWFNNTYILRLKDLDFEVPVSRSKVKEFRQLMHL
1	MUSTER	2qv0A	0.926	0.500	1.807	threading_1	MKVIIVEDEFLAQQELSWLINTHSQMEIVGSFDDGLDVLKFLQHNKVDAIFLDINIPSLDGVLLAQNISQFAHKPFIVFITAWKEHAVEAFELEAFDYILKPYQESRIINMLQKLTTAWEQQ--------------------------------------------------------------------------------------------------------------------------
2	HHPRED-l	1s8n_A	0.185	0.754	1.930	threading_2	RRVLIAEDEALIRMDLAEMLREEG-YEIVGEAGDGQEAVELAELHKPDLVIMDVKMPRRDGIDAASEIASK-RIAPIVVLTAFSDLVERARDAGAMAYLVKPFSISDLIPAIELAVSRFREITALEGEVATLSERETRKLVERAKGL--LQTKH-GMTEPDA-FKWIQR--AAMDRRTTMKRVAEVV---------------------------------------------------LETLG-
3	SPARKS	2qv0a	0.926	0.500	2.483	threading_3	MKVIIVEDEFLAQQELSWLINTHSQMEIVGSFDDGLDVLKFLQHNKVDAIFLDINIPSLDGVLLAQNISQFAHKPFIVFITAWKEHAVEAFELEAFDYILKPYQESRIINMLQKLTTAWEQQ--------------------------------------------------------------------------------------------------------------------------
4	PROSPECT2	2qv0A	0.926	0.500	2.261	threading_4	MKVIIVEDEFLAQQELSWLINTHSQMEIVGSFDDGLDVLKFLQHNKVDAIFLDINIPSLDGVLLAQNISQFAHKPFIVFITAWKEHAVEAFELEAFDYILKPYQESRIINMLQKLTTAWEQQ--------------------------------------------------------------------------------------------------------------------------
5	SPARKS	1a2oa	0.165	0.992	2.120	threading_5	IRVLSVDDSALMRQIMTEIINSHSDMEMVATAPDPLVARDLIKKFNPDVLTLDVEMPRMDGLDFLEKLMRLRPMPVVMVSSLTSEVTLRALELGAIDFVTKPEGMLAYSEMIAEKVRTAARARIAAHKPMAAPTTLKAGPLLSSEKLIAIGASTLQPLPLSSPAVIITQHMPPGFTRSFAERLNKLCQDGERVLPGHAYIAPGDKHMELAR-SGANYQIKIHDGRNAVGVGAAGMLAMYQA-GA
6	PPA-I	2qv0A	0.926	0.500	2.615	threading_6	MKVIIVEDEFLAQQELSWLINTHSQMEIVGSFDDGLDVLKFLQHNKVDAIFLDINIPSLDGVLLAQNISQFAHKPFIVFITAWKEHAVEAFELEAFDYILKPYQESRIINMLQKLTTAWEQQ--------------------------------------------------------------------------------------------------------------------------
7	PROSPECT2	1a2oa	0.179	0.939	2.142	threading_7	MRVLSVDDSALMRQIMTEIINSHSDMEMVATAPDPLVARDLIKKFNPDVLTLDVEMPRMDGLDFLEKLMRLRPMPVVMVSSLTGKVTLRALELGAIDFVTKPQLLAYSEMIAEKVRTAARARIAAHKPMAAPTTLKAGPLLSSEKLIAIGALPGHAYIAPGDKHMELARSGANYQIKIHFHSVAKH---------AGRNAVGMLAMYQ-----AGAWTIAQNGVSEVVDL-SQVSQQMLAKISI
8	HHPRED-g	1dz3_A	0.311	0.488	1.659	threading_8	IKVCIADDNRELVSLLDEYISSQPDMEVIGTAYNGQDCLQMLEEKRPDILLLDIIMPHLDGLAVLERIRAFEHQPNVIMLTAFGDVTKKAVELGASYFILKPFDMENLAHHIRQVYGKT-----------------------------------------------------------------------------------------------------------------------------
9	HHPRED-l	1kgs_A	0.161	0.840	1.929	threading_9	VRVLVVEDERDLADLITEALKKE-F--TVDVCYDGEEG---ALNEPFDVVILDI-LPVHDGWEILKS-RESGVNTPVL-LTALSDYRVKGLN-GADDYLPKPFDLRELIARVRALIRRKSESKSTKLVC-------GDLILDTATKKAYRGSKEIDLTKKEYQILYLV-NKNRVVTK---EELQEHLW-----VFSDVLRSHIKNLRKVDKGFKKKIIHTVRGIGYVARDE-------------
10	SP3	2qv0a	0.926	0.500	2.469	threading_10	MKVIIVEDEFLAQQELSWLINTHSQMEIVGSFDDGLDVLKFLQHNKVDAIFLDINIPSLDGVLLAQNISQFAHKPFIVFITAWKEHAVEAFELEAFDYILKPYQESRIINMLQKLTTAWEQQ--------------------------------------------------------------------------------------------------------------------------

Predicted Tertiary Structure


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TM-score=0.658 to 1ny5B SCOP code=c.23.1.1	TM-score=0.658 to 1ny5B SCOP code=c.23.1.1	TM-score=0.795 to 1s8nA SCOP code=c.23.1.1	TM-score=0.658 to 1ny5B SCOP code=c.23.1.1	TM-score=0.861 to 1s8nA SCOP code=c.23.1.1