Template-based Modeling Results for C56H_ECOLI

Submitted Primary Sequence

>Length 176
MNRFSKTQIYLHWITLLFVAITYAAMELRGWFPKGSSTYLLMRETHYNAGIFVWVLMFSRLIIKHRYSDPSIVPPPPAWQMKAASLMHIMLYITFLALPLLGIALMAYSGKSWSFLGFNVSPFVTPNSEIKALIKNIHETWANIGYFLIAAHAGAALFHHYIQKDNTLLRMMPRRK
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170

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Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MNRFSKTQIYLHWITLLFVAITYAAMELRGWFPKGSSTYLLMRETHYNAGIFVWVLMFSRLIIKHRYSDPSIVPPPPAWQMKAASLMHIMLYITFLALPLLGIALMAYSGKSWSFLGFNVSPFVTPNSEIKALIKNIHETWANIGYFLIAAHAGAALFHHYIQKDNTLLRMMPRRK
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MNRFSKTQIYLHWITLLFVAITYAAMELRGWFPKGSSTYLLMRETHYNAGIFVWVLMFSRLIIKHRYSDPSIVPPPPAWQMKAASLMHIMLYITFLALPLLGIALMAYSGKSWSFLGFNVSPFVTPNSEIKALIKNIHETWANIGYFLIAAHAGAALFHHYIQKDNTLLRMMPRRK
55511210000000000000000000101110232122111012002000000000000000011213212112311111110000000000000000000000011011221100002101112322301210220020000000000000000000000012221012202444
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MNRFSKTQIYLHWITLLFVAITYAAMELRGWFPKGSSTYLLMRETHYNAGIFVWVLMFSRLIIKHRYSDPSIVPPPPAWQMKAASLMHIMLYITFLALPLLGIALMAYSGKSWSFLGFNVSPFVTPNSEIKALIKNIHETWANIGYFLIAAHAGAALFHHYIQKDNTLLRMMPRRK
1	PROSPECT2	1t33A	0.103	0.938	1.026	threading_1	MNIPTTTTKGEQAKSQLIAAALAQFGDIAALAGQNIAAKEDLYLACAQWIADFLGEKFRPHAEKAERLFSQPAPDRDAIRELILLACKNMIMLLEDTVNLSKFISREQLSPTSAY-----------QLVHEQVIDPLHTHLTRLVAAYTTHALLGEVLAFRLGKETILLRTGWPQQ
2	HHPRED-l	1kqf_C	0.135	0.886	4.727	threading_2	IVRTKFIDRACHWTVVICFFLVALSGISFFFPTQTFGTPQMGRILHPFFGIAIFVALMFMFVRFVHHNIPDKKD--IPWLLNIVKMMFWSIMSMIFVLLVTGVIIW------------RPYFAQYFPMQVVRYSLLIHAAAGIILIHAILIHMYMAFWV-----KGSIKGMIEGK-
3	HHPRED-g	1kqf_C	0.134	0.892	5.666	threading_3	IVRTKFIDRACHWTVVICFFLVALSGISFFFPTQTFGTPQMGRILHPFFGIAIFVALMFMFVRFVHHNIPDKKDI--PWLLAGQKMMFWSIMSMIFVLLVTGVIIW---------RP---YFAQYFPMQVVRYSLLIHAAAGIILIHAILIHMYMAFWV-----KGSIKGMIEGKV
4	HHPRED-g	1kqf_C	0.128	0.534	1.213	threading_4	------------------------------------------------------------------SKSKMIVR-TK----FIDRACHWTVVICFFLVALSGISFFFPTL-----------QWLTQTFGTPQMGRILHPFFGIAIFVALMFMFVRFVHHNIPDKKDIPWLLKGNEH
5	MUSTER	4a2nB	0.121	0.989	0.870	threading_5	MN--ENLWKICFIVMFIIWVFVRKVYGTRAMKNKSKKKVRPNFEKSLVFLNFIGMVFLPLTAVFSSYLDSFNINLPDSIRLFALIVTFLNIGLFTKIHKDLGAILEIKDGHKLVKEGIYKNIRHPMYAHLWLWVITQGIILSNWVVLIFGIVAWAILYFIRVPKEELLIEEFGDMG
6	SPARKS	1kqfc	0.137	0.915	0.983	threading_6	IVRTKFIDRACHWTVVICFFLVALSGISFQWLTQTFGTPQMGRILHPFFGIAIFVALMFMFVRFVHHNIPGNEHKVADVGKYNAGQKMMFWSIMSMIFVLLVTGVIIWRPYFAQYFP----------MQVVRYSLLIHAAAGIILIHAILIHMYMAFW-----VKGSIKGMIEGKV
7	PROSPECT2	1pb6a	0.107	0.847	0.998	threading_7	AAGVSKTNLLYYYIAVLRQILDIWLAPLKAFREDFAPLAAIKEYIRLKLEVSRDYPQASRLFCMEMLAGAPLLM--DELTGDLKALIDEKSALIAGWVK--------------------SGKLAPIDPQHL-----IFMIWASTQHYADFAPQVEAVTGATLRDEVFFNQTVIRPR
8	PPA-I	1kqfC	0.121	0.938	0.822	threading_8	IVRTKFIDRACHWTVVICFFLVALSGISFFFLTQTFGTPQMGRILHPFFGIAIFVALMFMFVRFVHHNIPD--KKDIPWLLNIVEVLKGAGQKMMFWSIMSMIFVLLVTGVII----WRPYFAQYFPMQVVRYSLLIHAAAGIILIHAILIHMYMAFWV-----KGSIKGMIEGKV
9	HHPRED-l	3cx5_C	0.135	0.926	0.814	threading_9	RKSN-VYLSLMGSLLGLCLVIQIVTGIFMAMHYSSVHNGYILRYLHANGASFFFMVMFMHMAKGLYYGSYRSPRV-TLW------NVGVIIFILTIATAFLGYCCVYGQTSAIPFVGNDIVSGFSVSNPTIQRFFALHYLVPFIIAAMVIMHLMALHIHGS--SNP-LG-ITGND-
10	HHPRED-g	1jb0_A	0.156	0.835	0.554	threading_10	LNPVTLSDTA-HHHLAIAVLFIIAGHMYRTNWGIGHSLKEIL-EA---------------------HKGPFTGAGHKGLYEVLTTSWHAQL---AINLAMMGSLSIIVAQ---HMYAMPPYPYLATDYPTQLSLFTHHMWIGGFLVVGGAAHGAIFMVRDYMNQNNVLDRVLRHRD

Predicted Tertiary Structure


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TM-score=0.743 to 1t33A SCOP code=a.4.1.9	TM-score=0.750 to 1kqfC SCOP code=f.21.1.1	TM-score=0.772 to 1kqfC SCOP code=f.21.1.1	TM-score=0.487 to 1b04B SCOP code=d.142.2.2	TM-score=0.552 to 1r0dA SCOP code=a.216.1.1