Template-based Modeling Results for YOBB_ECOLI

Submitted Primary Sequence

>Length 218
MSFWKVAAAQYEPRKTSLTEQVAHHLEFVRAAARQQCQLLVFPSLSLLGCDYSRRALPAPPDLSLLDPLCYAATTWRMTIIAGLPVEYNDRFIRGIAVFAPWRKTPGIYHQSHGACLGRRSRTITVVDEQPQGMDMDPTCSLFTTGQCLGEPDLLASARRLQFFSHQYSIAVLMANARGNSALWDEYGRLIVRADRGSLLLVGQRSSQGWQGDIIPLR
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210

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Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MSFWKVAAAQYEPRKTSLTEQVAHHLEFVRAAARQQCQLLVFPSLSLLGCDYSRRALPAPPDLSLLDPLCYAATTWRMTIIAGLPVEYNDRFIRGIAVFAPWRKTPGIYHQSHGACLGRRSRTITVVDEQPQGMDMDPTCSLFTTGQCLGEPDLLASARRLQFFSHQYSIAVLMANARGNSALWDEYGRLIVRADRGSLLLVGQRSSQGWQGDIIPLR
CCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCHHHCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHCCEEEEEEEEECCCCEEEEEEEEECCCCEEEEECCCCCCEEECCCEEEEEECCCCHHHHCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCEEEEECCCCEEEEEECCCCCCCEEEEECC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MSFWKVAAAQYEPRKTSLTEQVAHHLEFVRAAARQQCQLLVFPSLSLLGCDYSRRALPAPPDLSLLDPLCYAATTWRMTIIAGLPVEYNDRFIRGIAVFAPWRKTPGIYHQSHGACLGRRSRTITVVDEQPQGMDMDPTCSLFTTGQCLGEPDLLASARRLQFFSHQYSIAVLMANARGNSALWDEYGRLIVRADRGSLLLVGQRSSQGWQGDIIPLR
55311000000112310022002100200220152401000000011110221122011222210021002003324210000010224330010000002333110111411100001301000001300200112120000000212233312100110010033010000000021221111320200010242110000212243220110224
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MSFWKVAAAQYEPRKTSLTEQVAHHLEFVRAAARQQCQLLVFPSLSLLGCDYSRRALPAPPDLSLLDPLCYAATTWRMTIIAGLPVEYNDRFIRGIAVFAPWRKTPGIYHQSHGACLGRRSRTITVVDEQPQGMDMDPTCSLFTTGQCLGEPDLLASARRLQFFSHQYSIAVLMANARGNSALWDEYGRLIVRADRGSLLLVGQRSSQGWQGDIIPLR
1	MUSTER	3hkxA	0.147	0.995	2.256	threading_1	GSHMRIALMQHTARPLDPQHNLDLIDDAAARASEQGAQLLLTPELFGFGYVPSQICAQVSAVDAARSRLRGIARDRGIALVWSLPGPEGPQRGITAELADEHGEVLASYQKVQLRQLSLLVCYDVEFPEMVRAAAARGAQLVLVPTALAGDET-SVPGILLPARAVENGITLAYANHCGPEGGLVFDGGSVVVGPAGQPLGELGVEPGLLVVDLPDLQ
2	SPARKS	3hkxa	0.147	0.995	3.578	threading_2	GSHMRIALMQHTARPLDPQHNLDLIDDAAARASEQGAQLLLTPELFGFGYVPSQICAQVSAEDAARSRLRGIARDRGIALVWSLPGPEGEQRGITAELADEHGEVLASYQKVQGRQLSLLVCYDVEFPEMVRAAAARGAQLVLVPTALAGDET-SVPGILLPARAVENGITLAYANHCGPEGGLVFDGGSVVVGPAGQPLGELGVEPGLLVVDLPDDY
3	PROSPECT2	2e11A	0.114	0.963	2.470	threading_3	MHDLRISLVQGSTRWHDPAGNRDYYGALLEPL-AGQSDLVILPETFTSGFSNEAIDKAEDMDGPTVAWIRTQAARLGAAITGSVQLRTEHGVFNRLLWATPDGALQYYDAGRERLCVEWKGWRINPQNRFDVERPGQLDFDLQLFVANWPSARAYAWKTLLRARAIENLCFVAAVNRVGVDGNIDFLGQPQVEIREQEQVVTTTGDSFV-------LG
4	PPA-I	3hkxA	0.143	0.995	2.865	threading_4	GSHMRIALMQHTARPLDPQHNLDLIDDAAARASEQGAQLLLTPELFGFGYVPSQICAQVSAVDAARSRLRGIARDRGIALVWSLPGPEGEQRGITAELADEHGEVLASYQKVQLYQLSLLVCYDVEFPEMVRAAAARGAQLVLVPTALAGDET-SVPGILLPARAVENGITLAYANHCGPEGGLVFDGGSVVVGPAGQPLGELGVEPGLLVVDLPDDY
5	HHPRED-l	2dyu_A	0.126	0.982	3.857	threading_5	--GFLVAAIQFPVPIKDIDHNIESIIRTLHAAGYPGVELIIFPEYSTQGLNTAKWLSLLDVPGKETELYAKACKEAKVYGVFSIMERNNKNPYNTAIIIDPQGEIILKYRKLFPWNPGSKLAVCICHDGMIPELARKGCNVYIRI-SGYSTQVNDQWILTNRSNAWHNLMYTVSVNLAGYDNVFYYFGEGQICNFDGTTLVQGHRNPWEITGEIYPK-
6	HHPRED-g	3ilv_A	0.153	0.927	3.524	threading_6	-STIRIGGAAVNQTPIDWENNVKNILDAIEEAKNANVEILCLPELCITGYGCEDLFLTDWVAETAIEYCFEIAASTDITVSLGLP-RIAGITYNCVCLVE-NGIVKGFSAKQFLANEGFEICED---------HYEKGATLVLNSASHFAFGKSAIRYDLVIGGSERFDCTYVYANLLGNEAG-IYDGEVLIAH-KGKLIQRNDRLSFNIYADIAT--
7	SP3	3hkxa	0.147	0.995	3.656	threading_7	GSHMRIALMQHTARPLDPQHNLDLIDDAAARASEQGAQLLLTPELFGFGYVPSQICASAEQVDAARSRLRGIARDRGIALVWSLPGPEGPERGITAELADEHGEVLASYQKVQLYQLSLLVCYDVEFPEMVRAAAARGAQLVLVPTALAGDETSV-PGILLPARAVENGITLAYANHCGPEGGLVFDGGSVVVGPAGQPLGELGVEPGLLVVDLLHRN
8	SAM-T99	1j31A	0.144	0.959	3.557	threading_8	---VKVGYIQ-EPKILELDKNYSKAEKLIKEASKEGAKLVVLPELFDTGYNFESRDVAQQIPEGETTTFLELARELGLYIVAGTAEKSGNYLYNSAVVVGPRG-YIGKYRKIHLFYREKVFFEPGDIGFAKVGV-ICFDWFFPESARTLALKGAEIIAPRAPIRALENRVYTITADRVGKSLIASPKAEVLSIASETEEEIGVVEIDLNLARNKR---
9	MUSTER	2w1vA	0.161	0.995	2.183	threading_9	MSTFRLALIQLQVS-SIKSDNLTRACSLVREAAKQGANIVSLPECFNSPYGTYFPDYAEKIPGESTQKLSEVAKESSIYLIGGSPEEDAGKLYNTCSVFGPDGSLLVKHRKIHYCKVGLGICYDMRFAELAQIYAQRGCQLLVYPGAFNLTTGPAHWELLQRARAVDNQVYVATASPARDKASYVAWGHSTVVDPWGQVLTKAGTEETILYSDIDLLK
10	SPARKS	2e11a	0.112	0.986	3.455	threading_10	MHDLRISLVQGSTRWHDPAGNRDYYGALLE-PLAGQSDLVILPETFTSGFSNEAIDKAEDMDGPTVAWIRTQAARLGAAITGSVQLRTEHGVFNRLLWATPDG-ALQYYDKRHGWRINPQVCYDLRFPVFCRNRGQLDFDLQLFVANWP-SARAYAWKTLLRARAIENLCFVAAVNRVGVDNQLHYAGDSAVIDFLGQPQVEIREQEQVVTTTISAAA

Predicted Tertiary Structure


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TM-score=0.825 to 1f89A SCOP code=d.160.1.1	TM-score=0.828 to 1f89A SCOP code=d.160.1.1	TM-score=0.828 to 1f89A SCOP code=d.160.1.1	TM-score=0.763 to 1f89A SCOP code=d.160.1.1	TM-score=0.819 to 1f89A SCOP code=d.160.1.1