Template-based Modeling Results for YOAA_ECOLI

Submitted Primary Sequence

>Length 636
MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLANPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYWYECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMTLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRTRDIARAVRFLAIPSSR
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLANPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYWYECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMTLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRTRDIARAVRFLAIPSSR
CCHHHCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCHHHHHHCCCCCHHHHHHHCCCCCEEHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCEEEEEEECCHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHCCCCCEEEEECCCCCHHHCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHCCCEEEEEECCEEECCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCEECCHHHHHHHHHCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLANPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYWYECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMTLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRTRDIARAVRFLAIPSSR
354212330300210222312320220021002003422200020131012000100000323321000002321121002210310131042200001021322210122012213222322221101000021122322302122022223223002201123220002203222100011011102101000000000000000122111311241100001212202200131103201131012002101201221131022023002200200210112112222312132112223022001101200220121022121112102101210220211032023123311000011233210000010100210221014311000000000222320310022011330200102121222310000013322323222003200200210032232200000001200220021023213120012232221200210231220000000100200214132010000020111123121021112103332121011000020011011001200232312000000122122320001003102212211202201211222334
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLANPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYWYECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMTLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRTRDIARAVRFLAIPSSR
1	MUSTER	2vsfA	0.172	0.906	2.529	threading_1	--------------------------------------YGVALESPTGSGKTIMALKSALQYKLKVLYLVRTNSQEEQVIKE-LRSLSSTM--KIRAIPMQGRVNMCILYRMVDDLHEINAESLAKFCNMKKREVMAGNEAACPYFNFKIRSDETKRFLFDELPTAEEFYDYGERNNVCPYESMKAALPDADIVIAPYAYFLNRSVAEKLSHWGVSRNQIVIILDEAHNLPDIGRSIGSFRISVESLNRADREAQAYGDPELSQKIHVSDLIEMIRSALQSMVSERCGKGDRIRFQEFMEYMRIMNSEREIRSLLNYLYLFGEYVENEKEKVGKPFSYCSSVASRIIAFSDQDEEKYAAILSPEDGG-YMQAACLDPSGILE-VLKE--SKTIHMSGTLD---PFDFYSDITGFE-IPFKKIGEIFPPENRYIAYYDGVSSDTLDEKELDRMATVIEDIILKVKKNTIVYFPSYSLMDRVENRVSFEHMKEYRGIDQKELYSMLKKFRRDH-GTIFA---VSGGRLSEGNELEMIILAGLPFPRP-DAINRSLFDYYERKYGKGWEYSVVYPTAIKIRQEIGRLIRSAEDTGACVILDKRAGQ------FRKFIPDMKKTSDASDIYNFFISAQAR
2	SPARKS	2vsfa	0.178	0.903	8.093	threading_2	--------------------------------------YGVALESPTGSGKTIMALKSALQRKLKVLYLVRTNSQEEQVIKELRSLSS---TMKIRAIPMQGRVNMCILYRMVDDLHEINAESLAKFCNMKKREVMAGNEAPYFNFKIRSDETKRFLFDELPT--AEEFYDYGERNNVCPYESMKAALPDADIVIAPYAYFLRSVAEKFLSHWGVSRNQIVIILDEAHNLPDIGRSIGSFRISVESLNRADREAQAYGDPELSQKIHVSDLIEMIRSALQSMVSERCGKGDRIRFQEFMEYMRIMRSEREIRSLLNYLYLFGEYVENEKEKVGKPFSYCSSVASRIIAFSDQDEEKYAAILSPEDGG-YMQAACLDPSGILEVLKE---SKTIHMSGTLD---PFDFYSDITGFE-IPFKKIGEIFPPENRYIAYYDGVSSDTLDEKELDRMATVIEDIILKVKKNTIVYFPSYSLMDRVENRVSFEHMKEYRGIDQKELYSMLKKFRR-DHGTIFAVSG---GRLSEGNELEMIILAGLPFPRPD-AINRSLFDYYERKYGKGWEYSVVYPTAIKIRQEIGRLIRSAEDTGACVILDKRA------GQFRKFIPDMKKTSDASDIYNFFISAQAR
3	PROSPECT2	2vsfA	0.178	0.903	4.662	threading_3	--------------------------------------YGVALESPTGSGKTIMALKSALQRKLKVLYLVRTNSQEEQVI-KELRSLSS--TMKIRAIPMQGRVNMCILYRMVDDLHEINAESLAKFCNMKKREVMAGNEAACPYFNFKIRSDETKRFLFDELPTAEEFYDYGERNNVCPYESMKAALPDADIVIAPYAYFLNRSVAEKLSHWGVSRNQIVIILDEAHNLPDIGRSIGSFRISVESLNRADREAQAYGDPELSQKIHVSDLIEMIRSALQSMVSERCGKGDRIRFQEFMEYMRIEREIRSLLNYLYLFGEYVENEKE--KVGKVPFSYCSSVASRIIAFSDQDEEKYAAILS-PEDGGYMQAACLDPSGILEVLKE---SKTIHMSGTL---DPFDFYSDITGFE-IPFKKIGEIFPPENRYIAYYDGVSSDTLDEKELDRMATVIEDIILKVKKNTIVYFPSYSLMDRVENRVSFEHMKEYRGIDQKELYSMLKKFRRDHGTIF----AVSGGRLSEGNELEMIILAGLPFPRP-DAINRSLFDYYERKYGKGWEYSVVYPTAIKIRQEIGRLIRSAEDTGACVILDKRA------GQFRKFIPDMKKTSDPSDIYNFFISAQAR
4	PPA-I	2vsfA	0.172	0.906	3.227	threading_4	--------------------------------------YGVALESPTGSGKTIMALKSALQYKLKVLYLVRTNSQEEQVIKELRSLSSTM---KIRAIPMQGRVNMCILYRMVDDLHEINAESLAKFCNMKKREVMAGNEAACPYFNFKIRSDETKRFLFDELPTAEEFYDYGERNNVCPYESMKAALPDADIVIAPYAYFLNRSVAEKFLSHGVSRNQIVIILDEAHNLPDIGRSIGSFRISVESLNRADREAQAYGDPELSQKIHVSDLIEMIRSALQSMVSERCGKGDRIRFQEFMEYMRIMNSEREIRSLLNYLYLFGEYVENEKEKVGKPFSYCSSVASRIIAFSDQDEEKYAAILSPEDGG-YMQAACLDPSGILEVL---KESKTIHMSGTLD---PFDFYSDITGFEIP-FKKIGEIFPPENRYIAYYDGVSSDTLDEKELDRMATVIEDIILKVKKNTIVYFPSYSLMDRVENRVSFEHMKEYRGIDQKELYSMLKKFRRDHG-TIFAV---SGGRLSEGNELEMIILAGLPFPRPD-AINRSLFDYYERKYGKGWEYSVVYPTAIKIRQEIGRLIRSAEDTGACVILDKRAGQFR------KFIPDMKKTSDASDIYNFFISAQAR
5	HHPRED-l	3crv_A	0.185	0.841	6.054	threading_5	----------------MVKLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLEVKPKVLFVVRTHNEFYPIY-RDLTKIREKR--NITFSFLVGKPSS-CLYAEKG-AE-SEDIPCK------YCELKGSIVEVKT---------DDSPLSLVKKL-----KKDGLQDKFCPYYSLLNSLYKADVIALTYPYFFIDRYREF---IDIDLREYMIVIDEAHNLDK-VNELEERSLSEITIQMAIKQSKSEESR---------RILSKLLNQLREV---VLPDEKYIKVENV-PK-LSKEELEILA---DDYEDIRKDSLKQGKVNKIH---IGSILRFFSLLSI-G-SFIP--FSYS--K-RLVIKNPEISYYLN--LLNDNLSIILMSGTLPP---REYMEKVWGIKNMLEREIQKRV--SGSYECYIGVDVTSKYSDNMWKRYADYLLKIYFQAKANVLVVFPSYEIMDRVMSR----ISLPKYVESEDSVEDLYSAISANNKVLIGSVGKLAEGIELRRSLISDVVIVGIPYPPP-DDYLKILAQRVSLMNRENEEFLFKIPALVTIKQAIGRAIRDVNDKCNVWLLDKRFESLYWKK-NLKCLNANKMK-L--------------
6	HHPRED-g	3crv_A	0.189	0.840	6.845	threading_6	----------------MVKLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLEVKPKVLFVVRTHNEFYPIY-RDLTKIREKR--NITFSFLVGKPSS-CLYAEKG-AESEDI-PC------KYCELKGSIVEVKT---------DDSPLSLVKKLKKD--GL---QDKFCPYYSLLNSLYKADVIALTYPYFFIDR-YREF-ID-IDLREYMIVIDEAHNLDK-VNELEERSLSEITIQMAIKQSKSEESR---------RILSKLLNQLREV--VLPDE----KYIKVENVKLSKEELEILADDYEDIRK---DSLKQGKVNKIH---IGSILRFFSLLSI-G-SFIP--FSYSK---RLVIKNPEISYYLN-LLNDNELSIILMSGTLPP---REYMEKVWGIKNMLEREIQKRV--SGSYECYIGVDVTSKYDDNMWKRYADYLLKIYFQAKANVLVVFPSYEIMDRVMS----RISLPKYVESEDSVEDLYSAISANNKVLIGSVGKLAEGIELRRSLISDVVIVGIPYPPP-DDYLKILAQRVSKMNRENEFLFKIP-ALVTIKQAIGRAIRDVNDKCNVWLLDKRFESLYWKK-NLKCLNANKMKL---------------
7	SP3	2vsfa	0.174	0.903	7.484	threading_7	--------------------------------------YGVALESPTGSGKTIMALKSALQYKLKVLYLVRTNSQEEQVIKELRSLSS---TMKIRAIPMQGRVNMCILYRMVDDLHEINAESLAKFCNMKKREVMAGNEAPYFNFKIRSDETKRFLFDELPT--AEEFYDYGERNNVCPYESMKAALPDADIVIAPYAYFLRSVAEKFLSHWGVSRNQIVIILDEAHNLPDIGRSIGSFRISVESLNRADREAQAYGDPELSQKIHVSDLIEMIRSALQSMVSERCGKGDRIRFQEFMEYMRIMNKEREIRSLLNYLYLFGEYVENEKEKVGVPFSYCSSVASRIIAFSDQDEEKYAAILSPEDGG-YMQAACLDPSGILEVLKE---SKTIHMSGTLD---PFDFYSDITGFE-IPFKKIGEIFPPENRYIAYYDGVSSDTLDEKELDRMATVIEDIILKVKKNTIVYFPSYSLMDRVENRVSFEHMKEYRGIDQKELYSMLKKFRR-DHGTIFAV---SGGRLSEGNELEMIILAGLPFPRPD-AINRSLFDYYERKYGKGWEYSVVYPTAIKIRQEIGRLIRSAEDTGACVILDKRA------GQFRKFIPDMKKTSDASDIYNFFISAQAR
8	SAM-T99	2vsfA	0.184	0.863	5.000	threading_8	---------------------------------------GVALESPTGSGKTIMALKSALQYKLKVLYLVRTNSQEEQV----IKELRSLSTMKIRAIPMQGRVNMCILYRMVDDLHEINAESLEAACPYFNFKIRSDETKRFLFDELPTA------------EEFYDYGER---NNVCPYESMKAALPDADIVIAPYAYFLNRSVAEKLSHWGVSRNQIVIILDEAHNLPDIGRSIGSFRISVESLNRADREAGDPELSQKIHVSDLIEMIRSALQSMVSERCGKGDVRIRFQEFMEYMRIMNKRSEREIRSLLNYLYLFGEYVENKEKVGKVPFSYCSSVASRIIAFSDQDEEKYAAILSPEDGGQAACLDPSGILEVLKE------SKTIHMSGTL---DPFDFYSDITGF-EIPFKKIGEIFPPENRYIAYYDGVSSKYLDEKELDRMATVIEDIILKVKKNTIVYFPSYSLMDRVENRVSFEHMKEYRGIDQKELYSMLKKFRRDHGTIFA------------GNELEMIILAGLPFPRP-DAINRSLFDYYERKYGKGWEYSVVYPTAIKIRQEIGRLIRSAEDTGACVILDKRAG------QFRKFIPDMKKTSDPADIYNFFISAQAR
9	MUSTER	3crvA	0.186	0.844	2.256	threading_9	----------------MVKLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLEVKPKVLFVVRTHNEFYPIYRD-LTKIRE--KRNITFSFLVGKPSS-CLYAEKGAESEDIPCKY--------------CELKGSIVEVKTDDSPLSLVKKLK--------KDGLQDKFCPYYSLLNSLYKADVIALTYPYFFIDRYRE---FIDIDLREYMIVIDEAHNLDK-VNELEERSLSEITIQMAIKQS---------KSEESRRILSKLLNQLREVVLPDEKYIKVENVPKLS--------KEELEILADDYEDIRKDSLKQGKVNKIHIGSILRFFSLLSI-------SFIPFSYSK----RLVIKNPEISYYLN-LLNDNELSIILMSGTLPP---REYMEKVWGIKNMLYLDVEREIQKRVSGECYIGVDVTDMRSDNMWKRYADYLLKIYFQAKANVLVVFPSYEIMDRVMSRI----SLPKYVESEDSSVEDLYSAISANNKVLIGSGKLAEGIELRNNLISDVVIVGIPYPPPDDYLKILAQRVSLKMNRENEEFLFKIPALVTIKQAIGRAIRDVNDKCNVWLLDKRFESLYWKKNL--CLNA-NKMKL--------------
10	SPARKS	3crva	0.187	0.847	7.280	threading_10	----------------MVKLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLEVKPKVLFVVRTHNEFYPIYRDL-TKIRE--KRNITFSFLVGKPSSCLYAEKGAESEDIP---------------CKYCELKGSI--VEVKTDDSPLSLVKKLKKDGLQ------DKFCPYYSLLNSLYKADVIALTYPYFFIDRYR---EFIDIDLREYMIVIDEAHNLDK-VNELEERSLSEITIQMAIKQS---------KSEESRRILSKLLNQLREVVLPDEKYIKVENVPKL--------SKEELEILADDYEDIRKDSLKQGKVNKIHIGSILRFFSLLSI-----GSFIPFSY-----SKRLVIKNPEISYYL-NLLNDNELSIILMSGTLP---PREYMEKVWGIKRNLYLDVEREIQKRGSYECYIGVDVTDMRSDNMWKRYADYLLKIYFQAKANVLVVFPSYEIMDRVMSR----ISLPKYVESEDSSVEDLYSAISANNKVLIGSGKLAEGIELRNNLISDVVIVGIPYPPPDDYLKILAQRVSLKMNRENEEFLFKIPALVTIKQAIGRAIRDVNDKCNVWLLDKRFESLYWKKN-LKCLNA-NKMKL--------------

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.527 to 2hyiI SCOP code=c.37.1.19	TM-score=0.525 to 2hyiI SCOP code=c.37.1.19	TM-score=0.533 to 2hyiI SCOP code=c.37.1.19	TM-score=0.515 to 2hyiI SCOP code=c.37.1.19	TM-score=0.523 to 2hyiI SCOP code=c.37.1.19