Template-based Modeling Results for YNJC_ECOLI

Submitted Primary Sequence

>Length 511
MATPLRYALIFLLWAMVAVIYAPLIPAALTLISPALSLTHWQALFADPQLPQALLATLVSTTIAAVGALLIALLVIVALWPGPKWQRMCARLPWLLAIPHVAFATSALLLFADGGLLYDYFPYFTPPMDRFGIGLGLTLAVKESAFLLWILAAVLSEKWLLQQVIVLDSLGYSRWQCLNWLLLPSVAPALAMAMLAIVAWSLSVVDVAIILGPGNPPTLAVISWQWLTQGDIDQQTKGALASLLLMLLLAAYVLLSYLLWRSWRRTIPRVDGVRKPATPLLPGNTLAIFLPLTGVLCVVLLAILADQSTINSEALINSLTMGLVATFIALLLLLLWLEWGPQRRQLWLWLPILLPALPLVAGQYTLALWLKLDGSWTAVVWGHLLWVMPWMLFILQPAWQRIDSRLILIAQTLGWSRAKIFFYVKCPLMLRPVLIAFAVGFAVGIAQYMPTLWLGAGRFPTLTTEAVALSSGGSNGILAAQALWQLLLPLIIFALTALVAKWVGYVRQGLR
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MATPLRYALIFLLWAMVAVIYAPLIPAALTLISPALSLTHWQALFADPQLPQALLATLVSTTIAAVGALLIALLVIVALWPGPKWQRMCARLPWLLAIPHVAFATSALLLFADGGLLYDYFPYFTPPMDRFGIGLGLTLAVKESAFLLWILAAVLSEKWLLQQVIVLDSLGYSRWQCLNWLLLPSVAPALAMAMLAIVAWSLSVVDVAIILGPGNPPTLAVISWQWLTQGDIDQQTKGALASLLLMLLLAAYVLLSYLLWRSWRRTIPRVDGVRKPATPLLPGNTLAIFLPLTGVLCVVLLAILADQSTINSEALINSLTMGLVATFIALLLLLLWLEWGPQRRQLWLWLPILLPALPLVAGQYTLALWLKLDGSWTAVVWGHLLWVMPWMLFILQPAWQRIDSRLILIAQTLGWSRAKIFFYVKCPLMLRPVLIAFAVGFAVGIAQYMPTLWLGAGRFPTLTTEAVALSSGGSNGILAAQALWQLLLPLIIFALTALVAKWVGYVRQGLR
CCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MATPLRYALIFLLWAMVAVIYAPLIPAALTLISPALSLTHWQALFADPQLPQALLATLVSTTIAAVGALLIALLVIVALWPGPKWQRMCARLPWLLAIPHVAFATSALLLFADGGLLYDYFPYFTPPMDRFGIGLGLTLAVKESAFLLWILAAVLSEKWLLQQVIVLDSLGYSRWQCLNWLLLPSVAPALAMAMLAIVAWSLSVVDVAIILGPGNPPTLAVISWQWLTQGDIDQQTKGALASLLLMLLLAAYVLLSYLLWRSWRRTIPRVDGVRKPATPLLPGNTLAIFLPLTGVLCVVLLAILADQSTINSEALINSLTMGLVATFIALLLLLLWLEWGPQRRQLWLWLPILLPALPLVAGQYTLALWLKLDGSWTAVVWGHLLWVMPWMLFILQPAWQRIDSRLILIAQTLGWSRAKIFFYVKCPLMLRPVLIAFAVGFAVGIAQYMPTLWLGAGRFPTLTTEAVALSSGGSNGILAAQALWQLLLPLIIFALTALVAKWVGYVRQGLR
5422111011000000000000110100020002110021002002123113000010011001000000000000010121221110020001000000000000000000200001300120011102000000000002100000000000022221220110031011010100000001100100000000000000000100000021112100000011012110320020011000100000000000100120023103213223321212120110021011100000000100132021002100100000000000000000000200222220100000000100000000000010302100000000000000010010012003401230120042022110200000100101200000000000000120000000021213101100000022121100000000100000000000000021122244224
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MATPLRYALIFLLWAMVAVIYAPLIPAALTLISPALSLTHWQALFADPQLPQALLATLVSTTIAAVGALLIALLVIVALWPGPKWQRMCARLPWLLAIPHVAFATSALLLFADGGLLYDYFPYFTPPMDRFGIGLGLTLAVKESAFLLWILAAVLSEKWLLQQVIVLDSLGYSRWQCLNWLLLPSVAPALAMAMLAIVAWSLSVVDVAIILGPGNPPTLAVISWQWLTQGDIDQQTKGALASLLLMLLLAAYVLLSYLLWRSWRRTIPRVDGVRKPATPLLPGNTLAIFLPLTGVLCVVLLAILADQSTINSEALINSLTMGLVATFIALLLLLLWLEWGPQRRQLWLWLPILLPALPLVAGQYTLALWLKLDGSWTAVVWGHLLWVMPWMLFILQPAWQRIDSRLILIAQTLGWSRAKIFFYVKCPLMLRPVLIAFAVGFAVGIAQYMPTLWLGAGRFPTLTTEAVALSSGGSNGILAAQALWQLLLPLIIFALTALVAKWVGYVRQGLR
1	MUSTER	2onkC	0.165	0.485	1.313	threading_1	----MRLLFSALLALLSSIILL-LLPVAATVTLQLFNFDEFLKAASDPAVWKVVLTTYYAALISTLIAVIFGTPLAYILARKPGKSVVEGIVDLPVVIPHTVAGIALLVVFGSSGLIGSFSP-LKFVD--ALPGIVVAMLFVSVPIYINQAKEGFASVD-VRLEHVARTLGSSPLRVFFTVSLPLSVRHIVAGAIMSWARGISEFGAVVVIA-YYPMIAPTLIYERYLSEGLS--AAMPVAAILILLSLAVFVALRIIVG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2	PROSPECT2	1qgra	0.119	1.000	2.265	threading_2	MEERAAVENLPTFLVELSRVLAPDIKAQYQQRWLAIDANARREVKNWPELIPQLVANVTSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMAATNALLNSLEFTKANFIMQVVCEATQCPDTRVRVAALQNLVKIMSALFAITIEAMKSDIDEVALQGIEFWSKFYAKGALQYLVPILTQTPCKAAGVCLMLLATCCEDDIVIKNPDWRYRDAAVMELMKDPSVVVRDTAALAPLLQCLIASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMSLLCATLQNVLRKVQHQDALQISDVVMASLLRDALMAVSTLVEVLGGEFLKYMEAFVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNEFKKYLEVVLNTLQQASLNELRESCLEAYTGIVQGLKGDQENVHPDVMLIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKLVEARPMKNQA
3	SPARKS	2onkc	0.184	0.436	4.574	threading_3	-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MRLLFSALLALLSSIILLFVLLPVAATVTLDPAVWKVVLTTYYAALISTLIAVIFGTPLAYILKSVVEGIVDLPVVIPHTVAGIALLVVFSPLKFVDALPGIVVAMLFVSVPIYINQAKEGFASVDVRLEHVARTLGSSPLRVFFTVSLPLSVRHIVAGAIMSWARGISEFGAVVVI-AYYPMIAPTLIYERYLSEGLSAAMPVAAILILLSLAVFVALRIIVG----------
4	HHPRED-l	2onk_C	0.126	0.483	4.298	threading_4	---RLLFSALLALLSILLFVLLPVAATVTL---QLFNFDEFLKAASDPAVWKVVLTTYYAALISTLIAVIFGTPLAYILARKFPGKSVEGIVDLPVVIPHTVAGIALLVVFGSSGLIGSFS-PL--KFVDALPGIVVAMLFVSVPIYINQAKEGFASVD-VRLEHVARTLGSSPLRVFFTVSLPLSVRHIVAGAIMSWARGISEFGAVVVIA-YYPMIAPTLIYERYLSEGL---SAAMPVAAILILLSLAVFVALRIIVG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5	PPA-I	2onkC	0.169	0.462	3.215	threading_5	-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MRLLFSALLALLSSIILLFVLLPVAATVTLQL----------------------FNFDEFLKAASD-------PAVWKVVLTTYYAALISTLIAVIFGTPLAYILARKSFGIVDLPVVIPHTVAGIALLVVFSPLKFVDALPGIVVAMLFVSVPIYINQAKEGFASVDVRLEHVARTLGSSPLRVFFTVSLPLSVRHIVAGAIMSWARGISEFGAVVVI-AYYPMIAPTLIYERYLSEGLSAAMPVAAILILLSLAVFVALRIIVG----------
6	HHPRED-g	2onk_C	0.136	0.474	4.457	threading_6	LALLSSIILLFVLLPVAATVTL-----------QLFNFDEFLKAASDPAVWKVVLTTYYAALISTLIAVIFGTPLAYILARKSFPKSVEGIVDLPVVIPHTVAGIALLVVFGSSGLIGSFS---PLKFVDALPGIVVAMLFVSVPIYINQAKEGFASVD-VRLEHVARTLGSSPLRVFFTVSLPLSVRHIVAGAIMSWARGISEFGAVVVIA-YYPMIAPTLIYERYLSEGLS---AAMPVAAILILLSLAVFVALRIIVG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7	SP3	2onkc	0.178	0.462	3.736	threading_7	---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MRLLFSALLALLSSIILLFVLLPVAATVT--------------------------LQLFNFDEFLKAAS-------DPAVWKVVLTTYYAALISTLIAVIFGTPLAYILKSVVEGIVDLPVVIPHTVAGIALLVVFSPLKFVDALPGIVVAMLFVSVPIYINQAKEGFASVDVRLEHVARTLGSSPLRVFFTVSLPLSVRHIVAGAIMSWARGISEFGAVVVIAY-YPMIAPTLIYERYLSEGLSAAMPVAAILILLSLAVFVALRII--------VG--
8	MUSTER	3d31C	0.163	0.481	1.303	threading_8	---PLTFVFSFLLLVLFLFIFLTLSNMIFEQI--TEDFSGLVKAAGNRSVISSIFLSLYAGFLATLLALLLGAPTGYILARFPGKRLVESIIDVPVVVPHTVAGIALLTVFGSRGLIGEPLESY-IQFRDALPGIVVAMLFVSMPYLANSAREGFKSVD-PRLENAARSLGAPLWKAFFFVTLPLSARYLLIGSVMTWARAISEFGAVVILA-YYPMVGPTLIYDRFISYGLS--ASRPIAVLLILVTLSIFLVIR---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9	PROSPECT2	1b3ua	0.087	0.924	2.255	threading_9	AAASLYPIAVLIDEQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLLALAEQLGT----------FTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLHSPSDLEAHFVPLVAGGDWFTSRTSACGLFSVCAELRQYFRNLCSDDTPMVRRAAASKLGVLELDNVKSEIIPMFSDSVRLLAVEACVNIAQLLPQEDL-----EALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCE-------------------AEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKLPAIVELAEDAKWRVRLAIIEYMPLLEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFKEWAHATIIPKVLMTTLFCINVLSEVCGQDITT-----KHMLPTVLRMAGDPVANVRFNVAKSLQKISTLQSEVKPILEKLTQDQDVDVK
10	SPARKS	3d31c	0.204	0.450	4.396	threading_10	------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PLTFVFSFLLLVLFLFIFLTLSNMIFEQITEDFS------------------------GLVKAAGN--RSVISSIFLSLYAGFLATLLALLLGAPTGYIGKRLVESIIDVPVVVPHTVAGIALLTVFGSRGFRDALPGIVVAMLFVSMPYLANSAREGFKSVDPRLENAARSLGAPLWKAFFFVTLPLSARYLLIGSVMTWARAISEFGAVVIL-AYYPMVGPTLIYDRFISYGLSASRPIAVLLILVTLSIFLVIR--------------

Predicted Tertiary Structure


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TM-score=0.703 to 2onkC SCOP code=f.58.1.1	TM-score=0.606 to 1qgkA SCOP code=a.118.1.1	TM-score=0.580 to 2onkC SCOP code=f.58.1.1	TM-score=0.706 to 2onkC SCOP code=f.58.1.1	TM-score=0.638 to 2onkC SCOP code=f.58.1.1