Template-based Modeling Results for YNHG_ECOLI

Submitted Primary Sequence

>Length 334
MKRASLLTLTLIGAFSAIQAAWAVDYPLPPTGSRLVGQNQTYTVQEGDKNLQAIARRFDTAAMLILEANNTIAPVPKPGTTITIPSQLLLPDAPRQGIIVNLAELRLYYYPPGENIVQVYPIGIGLQGLETPVMETRVGQKIPNPTWTPTAGIRQRSLERGIKLPPVVPAGPNNPLGRYALRLAHGNGEYLIHGTSAPDSVGLRVSSGCIRMNAPDIKALFSSVRTGTPVKVINEPVKYSVEPNGMRYVEVHRPLSAEEQQNVQTMPYTLPAGFTQFKDNKAVDQKLVDKALYRRAGYPVSVSSGATPAASNAPSVESAQNGEPEQGNMLRVTQ
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MKRASLLTLTLIGAFSAIQAAWAVDYPLPPTGSRLVGQNQTYTVQEGDKNLQAIARRFDTAAMLILEANNTIAPVPKPGTTITIPSQLLLPDAPRQGIIVNLAELRLYYYPPGENIVQVYPIGIGLQGLETPVMETRVGQKIPNPTWTPTAGIRQRSLERGIKLPPVVPAGPNNPLGRYALRLAHGNGEYLIHGTSAPDSVGLRVSSGCIRMNAPDIKALFSSVRTGTPVKVINEPVKYSVEPNGMRYVEVHRPLSAEEQQNVQTMPYTLPAGFTQFKDNKAVDQKLVDKALYRRAGYPVSVSSGATPAASNAPSVESAQNGEPEQGNMLRVTQ
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCEEEECCCCCCHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCEEEEECCCCEEEEEECCCEEEEEEEEEECCCCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCEEEECCCCEEEEEECCCCCHHHCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MKRASLLTLTLIGAFSAIQAAWAVDYPLPPTGSRLVGQNQTYTVQEGDKNLQAIARRFDTAAMLILEANNTIAPVPKPGTTITIPSQLLLPDAPRQGIIVNLAELRLYYYPPGENIVQVYPIGIGLQGLETPVMETRVGQKIPNPTWTPTAGIRQRSLERGIKLPPVVPAGPNNPLGRYALRLAHGNGEYLIHGTSAPDSVGLRVSSGCIRMNAPDIKALFSSVRTGTPVKVINEPVKYSVEPNGMRYVEVHRPLSAEEQQNVQTMPYTLPAGFTQFKDNKAVDQKLVDKALYRRAGYPVSVSSGATPAASNAPSVESAQNGEPEQGNMLRVTQ
4320010000000000001001123121232222000212101023233112100320101111012213221212331220101132213323320000111311000012231001000000123223122210100110212211121001220133123122112112211101000100113010000001122211131020002011200220021032202020011102111243021001013212233343232121101100121332321113101200233211001000222322230222321331323323224234
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MKRASLLTLTLIGAFSAIQAAWAVDYPLPPTGSRLVGQNQTYTVQEGDKNLQAIARRFDTAAMLILEANNTIAPVPKPGTTITIPSQLLLPDAPRQGIIVNLAELRLYYYPPGENIVQVYPIGIGLQGLETPVMETRVGQKIPNPTWTPTAGIRQRSLERGIKLPPVVPAGPNNPLGRYALRLAHGNGEYLIHGTSAPDSVGLRVSSGCIRMNAPDIKALFSSVRTGTPVKVINEPVKYSVEPNGMRYVEVHRPLSAEEQQNVQTMPYTLPAGFTQFKDNKAVDQKLVDKALYRRAGYPVSVSSGATPAASNAPSVESAQNGEPEQGNMLRVTQ
1	MUSTER	1y7mA	0.354	0.482	1.372	threading_1	---------------------------------------LTYQVKQGD-TLNSIAADFRISTAALLQANPSLQAGLTAGQSIVIPG-LPDPYTIPYHIAVSIGAKTLTLSLNNR--VKTYPIAVGKILTQTPTGEFYIINRQRNP---------------------------GGPFGAYWLSLSAAH--YGIHGTNNPASIGKAVSKGCIRH-NKDVIELASIVPNGTRVTINR----------------------------------------------------------------------------------------------------
2	PROSPECT2	1sezA1	0.097	0.922	1.454	threading_2	AKRVAVIGAGVSGLAAAYKLKIHEAEGKAGGKLRSVSQDGLIWDEESEGDVTFLIDSLGLREKQQFPLSQNKRYIARNGTPVLLPSKTSANKKRQRGSFSFLGGQTLTELRLNSRVLELSCSCTEDSAIDSWSIISASPHKRQSEEESFDAVITAPLCDVKSKIAKRGNPFLLNFIPEVDYVPL-----SVVITTFKRENVKYPLEGFGVLVPSKEQQH-----GLKTLGTLFSSFPDRAPNNVYLYTTFVGGSRNRELAKASRTELKEIVTSDLKQLLLYGHNYDSVLDAIDKEKNLPGLFYAGNHR----------------GGLSVGESVS
3	SPARKS	1y7ma	0.342	0.482	3.287	threading_3	---------------------------------------LTYQVKQGD-TLNSIAADFRISTAALLQANPSLQAGLTAGQSIVIPGLPDP-YTIPYHIAVSIGAKTLTLSLNN--RVKTYPIAVGKILTQTPTGEFYIINRQRN---------------------------PGGPFGAYWLSLSAAH--YGIHGTNNPASIGKAVSKGCIRH-NKDVIELASIVPNGTRVTINR----------------------------------------------------------------------------------------------------
4	PROSPECT2	1zatA	0.188	0.623	2.089	threading_4	KEQLASMNAIANQVRQYVTDLGTKYNTSTNDTKFKSTKRGEVTVPVGTYSWTIQTDSETEALKKAILAGQDFTRSPI----VQGGTTADHPLIEDTYIEVDLENQHMWYYK-DGKVALETDIVSGKPTTPTPAGVFYVWNKEEDATLKGT------------------NGTPYESPVNYWMPI--DWTGVGIHDSDWQPEYGGRGSHGCINTPPSVMKELFGMVEKGTPVLV-----------------------------------------------------------------------------------------------------F
5	PPA-I	1y7mA	0.354	0.482	2.038	threading_5	---------------------------------------LTYQVKQGD-TLNSIAADFRISTAALLQANPSLQAGLTAGQSIVIPG-LPDPYTIPYHIAVSIGAKTLTLSLNN--RVKTYPIAVGKILTQTPTGEFYIINRQRNP---------------------------GGPFGAYWLSLSAAH--YGIHGTNNPASIGKAVSKGCIRH-NKDVIELASIVPNGTRVTINR----------------------------------------------------------------------------------------------------
6	HHPRED-l	1y7m_A	0.342	0.482	8.182	threading_6	---------------------------------------LTYQVKQGD-TLNSIAADFRISTAALLQANPSLQAGLTAGQSIVIPGLP-DPYTIPYHIAVSIGAKTLTLSLN-NRV-KTYPIAVGKILTQTPTGEFYIINRQRN---------------------------PGGPFGAYWLSLSAA--HYGIHGTNNPASIGKAVSKGCIR-HNKDVIELASIVPNGTRVTINR----------------------------------------------------------------------------------------------------
7	HHPRED-g	1y7m_A	0.348	0.482	7.452	threading_7	---------------------------------------LTYQVKQGD-TLNSIAADFRISTAALLQANPSLQAGLTAGQSIVIPG-LPDPYTIPYHIAVSIGAKTLTLSLNN-RV-KTYPIAVGKILTQTPTGEFYIINRQRN---------------------------PGGPFGAYWLSLSAAH--YGIHGTNNPASIGKAVSKGCIR-HNKDVIELASIVPNGTRVTINR----------------------------------------------------------------------------------------------------
8	SP3	1y7ma	0.354	0.482	3.359	threading_8	---------------------------------------LTYQVKQGD-TLNSIAADFRISTAALLQANPSLQAGLTAGQSIVIPGLPDPYTIPY-HIAVSIGAKTLTLSL--NNRVKTYPIAVGKILTQTPTGEFYIINRQRNP---------------------------GGPFGAYWLSLSAAH--YGIHGTNNPASIGKAVSKGCIRH-NKDVIELASIVPNGTRVTINR----------------------------------------------------------------------------------------------------
9	SAM-T99	1y7mA	0.358	0.476	5.686	threading_9	---------------------------------------LTYQVKQGD-TLNSIAADFRISTAALLQANPSLQAGLTAGQSIVIPGLPD-PYTIPYHIAVSIGAKTLTL--SLNNRVKTYPIAVGKILTQTPTGEFYIINRQRN---------------------------PGGPFGAYWLSL--SAAHYGIHGTNNPASIGKAVSKGCIR-HNKDVIELASIVPNGTRVTI------------------------------------------------------------------------------------------------------
10	MUSTER	1zatA	0.215	0.614	0.950	threading_10	IPSSDIMSWL-TEQVRQYVTDLGTKYNTSTNDTKFKSTKREVTVPVGTYSWTIQTDSETEALKKAILAGQDFSPIVQGGTTAD------HPLIEDTYIEVDLENQHMWYYK-DGKVALETDIVSGKPTTPTPAGVFYVWNKEEDATLKGTNG-----------------TPYESPVN-YWMPIDWTG--VGIHDSDWQPEYGGRGSHGCINTPPSVMKELFGMVEKGTPVLVF-----------------------------------------------------------------------------------------------------

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.734 to 1y7mA SCOP code=b.160.1.1	TM-score=0.605 to 1sezA SCOP code=c.3.1.2	TM-score=0.734 to 1y7mA SCOP code=b.160.1.1	TM-score=0.724 to 1y7mA SCOP code=b.160.1.1	TM-score=0.674 to 1zatA SCOP code=b.160.1.1