Template-based Modeling Results for YNFM_ECOLI

Submitted Primary Sequence

>Length 417
MSRTTTVDGAPASDTDKQSISQPNQFIKRGTPQFMRVTLALFSAGLATFALLYCVQPILPVLSQEFGLTPANSSISLSISTAMLAIGLLFTGPLSDAIGRKPVMVTALLLASICTLLSTMMTSWHGILIMRALIGLSLSGVAAVGMTYLSEEIHPSFVAFSMGLYISGNSIGGMSGRLISGVFTDFFNWRIALAAIGCFALASALMFWKILPESRHFRPTSLRPKTLFINFRLHWRDRGLPLLFAEGFLLMGSFVTLFNYIGYRLMLSPWHVSQAVVGLLSLAYLTGTWSSPKAGTMTTRYGRGPVMLFSTGVMLFGLLMTLFSSLWLIFAGMLLFSAGFFAAHSVASSWIGPRAKRAKGQASSLYLFSYYLGSSIAGTLGGVFWHNYGWNGVGAFIALMLVIALLVGTRLHRRLHA
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MSRTTTVDGAPASDTDKQSISQPNQFIKRGTPQFMRVTLALFSAGLATFALLYCVQPILPVLSQEFGLTPANSSISLSISTAMLAIGLLFTGPLSDAIGRKPVMVTALLLASICTLLSTMMTSWHGILIMRALIGLSLSGVAAVGMTYLSEEIHPSFVAFSMGLYISGNSIGGMSGRLISGVFTDFFNWRIALAAIGCFALASALMFWKILPESRHFRPTSLRPKTLFINFRLHWRDRGLPLLFAEGFLLMGSFVTLFNYIGYRLMLSPWHVSQAVVGLLSLAYLTGTWSSPKAGTMTTRYGRGPVMLFSTGVMLFGLLMTLFSSLWLIFAGMLLFSAGFFAAHSVASSWIGPRAKRAKGQASSLYLFSYYLGSSIAGTLGGVFWHNYGWNGVGAFIALMLVIALLVGTRLHRRLHA
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MSRTTTVDGAPASDTDKQSISQPNQFIKRGTPQFMRVTLALFSAGLATFALLYCVQPILPVLSQEFGLTPANSSISLSISTAMLAIGLLFTGPLSDAIGRKPVMVTALLLASICTLLSTMMTSWHGILIMRALIGLSLSGVAAVGMTYLSEEIHPSFVAFSMGLYISGNSIGGMSGRLISGVFTDFFNWRIALAAIGCFALASALMFWKILPESRHFRPTSLRPKTLFINFRLHWRDRGLPLLFAEGFLLMGSFVTLFNYIGYRLMLSPWHVSQAVVGLLSLAYLTGTWSSPKAGTMTTRYGRGPVMLFSTGVMLFGLLMTLFSSLWLIFAGMLLFSAGFFAAHSVASSWIGPRAKRAKGQASSLYLFSYYLGSSIAGTLGGVFWHNYGWNGVGAFIALMLVIALLVGTRLHRRLHA
553322232222132333222323321441122000000000000000000010010001100420201211010000000000000000001001112211000000000000000000011020000000010000000000001000220222101100000000000000002000000020010100000000000000000020023143242222203100100211121200000000000000000000000001012121200310000000000000000010010032112000000000000000000000000000000000000010010000010022033010100000000100000000000000031000000000000000000000021233234
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MSRTTTVDGAPASDTDKQSISQPNQFIKRGTPQFMRVTLALFSAGLATFALLYCVQPILPVLSQEFGLTPANSSISLSISTAMLAIGLLFTGPLSDAIGRKPVMVTALLLASICTLLSTMMTSWHGILIMRALIGLSLSGVAAVGMTYLSEEIHPSFVAFSMGLYISGNSIGGMSGRLISGVFTDFFNWRIALAAIGCFALASALMFWKILPESRHFRPTSLRPKTLFINFRLHWRDRGLPLLFAEGFLLMGSFVTLFNYIGYRLMLSPWHVSQAVVGLLSLAYLTGTWSSPKAGTMTTRYGRGPVMLFSTGVMLFGLLMTLFSSLWLIFAGMLLFSAGFFAAHSVASSWIGPRAKRAKGQASSLYLFSYYLGSSIAGTLGGVFWHNYGWNGVGAFIALMLVIALLVGTRLHRRLHA
1	MUSTER	2gfpA	0.154	0.887	2.266	threading_1	------------------------------------LLLMLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRPVDAPRTR---LLTSYKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGV-LMGAVLGLSSMTVSILFILPIPAAFFGAWFAGPNKRFSTLMWQSVICCLLAWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFPFLAGTAGALVGGLQNIGSGVLASLSAMLPQTG-QGSLGLLMTLMGLLIVLCWLPL------
2	SPARKS	2gfpa	0.151	0.887	4.972	threading_2	------------------------------------LLLMLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRPVDAPRTRL---LTSYKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAV-LGLSSMTVSILFILPIPAAFGAWFAGRPNKRFSTLMWQSVICCLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFPFLAGTAGALVGGLQNIGSGVLASLSAMLPQTG-QGSLGLLMTLMGLLIVLCWLPL------
3	PROSPECT2	1pw4A	0.152	0.962	3.194	threading_3	FKPAPHKARLPAAEID---------------PTYRRLRWQIFLGIFFGYAAYYLVRALAMPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFDWHAALYMPAFCAILVALFAFAMMRDTPQPIEEYKNDTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYL-KEVKHFALDKSSWAYLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKAAGTAAGFTGLFGYLGGSVAASAVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGLVP
4	PPA-I	2gfpA	0.149	0.887	3.071	threading_4	------------------------------------LLLMLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRPVDAPRTR---LLTSYKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAV-LGLSSMTVSILFILPIPAAFFGAWFAGPNKRFSTLMWQSVICCLLAWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFPFLAGTAGALVGGLQNIGSGVLASLSAMLPQTG-QGSLGLLMTLMGLLIVLCWLPL------
5	HHPRED-l	3o7q_A	0.136	0.916	6.377	threading_5	-------------------------------RSYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNSVQTPYMIIVAIVLLVALLIMLKFPALQSDNHSDAKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIALTLCSAFMSIQYPTIFSLGIKNLGQDTKYGSSFI-VMTIIGGGIVTPVMGFVSDAGNIPTAELIPALCFAVIFIFARFRSQT---
6	HHPRED-g	3o7q_A	0.134	0.911	5.468	threading_6	-------------------------------RSYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNSVQTPYMIIVAIVLLVALLILTKFPALQSDNHSDAKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEE-IGMTAGFAANYLTTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFGGHVGL-IALTLCSAFMSIQYPTIFSLGIKNLGQDTKYGSSFIV-MTIIGGGIVTPVMGFVSDAGNIPTAELIPALCFAVIFIFARFRSQT---
7	SP3	2gfpa	0.154	0.887	5.525	threading_7	------------------------------------LLLMLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRPVDAPRTR---LLTSYKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGA-VLGLSSMTVSILFILPIPAAFGAWFAGRPNKRFSTLMWQSVICCLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFPFLAGTAGALVGGLQNIGSGVLASLSAMLPQTG-QGSLGLLMTLMGLLIVLCWLPL------
8	SAM-T99	2gfpA	0.152	0.868	6.354	threading_8	-------------------------------------LLMLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETR---PVDAPRTRLLTSYKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAV-LGLSSMTVSILFILPIPAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFPFLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTLMGLLI--------------
9	MUSTER	1pw4A	0.142	0.962	2.047	threading_9	---------------FKPAPHKARLPAAEIDPTYRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFDWHAALYMPAFCAILVALFAFAMMPQSCGLPPIEEYKNAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEV-KHFADKSSWAYFLYEYAGIPGTLLCGWMSDKVGNRGATGVFFMTLVTIATIVYWGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFGWDGGFMVMIGGSILAVILLIVVMIQLLQ
10	SPARKS	1pw4a	0.137	0.962	3.775	threading_10	-----------FKPAPHKARLPAAEIDPTYRRLRWQIFLGIFFGYAAYYKNFALAMPYL----VEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWAAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNWHAALYMPAFCAILVALFAFAMMRDTPQPIEEYKNDTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEV-KHFALDKSSWAYFLYEYGIPGTLLCGWMSDKFRGNRGATGVFFMTLVTIATIVYGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKAAGTAAGFTGLFGYLGGSVAAAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIRRHE

Predicted Tertiary Structure


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TM-score=0.701 to 1pv6A SCOP code=f.38.1.2	TM-score=0.702 to 1pv6A SCOP code=f.38.1.2	TM-score=0.701 to 1pv6A SCOP code=f.38.1.2	TM-score=0.907 to 1pw4A SCOP code=f.38.1.1	TM-score=0.704 to 1pv6A SCOP code=f.38.1.2