Template-based Modeling Results for YNEF_ECOLI

Submitted Primary Sequence

>Length 315
MLADWFSEQFSTGVLIVPCMLTLAIPGVLPRFKAEQMMPAIALIVSVIASVVIGGAGSLAFPLPALIWCAVRYTPQVTCLLTFVTGAVEIVLVANSVIDISVGSPFSIPQMFSARLGIATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTSTMRYGEEVV
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MLADWFSEQFSTGVLIVPCMLTLAIPGVLPRFKAEQMMPAIALIVSVIASVVIGGAGSLAFPLPALIWCAVRYTPQVTCLLTFVTGAVEIVLVANSVIDISVGSPFSIPQMFSARLGIATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTSTMRYGEEVV
CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCEECCEEEEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MLADWFSEQFSTGVLIVPCMLTLAIPGVLPRFKAEQMMPAIALIVSVIASVVIGGAGSLAFPLPALIWCAVRYTPQVTCLLTFVTGAVEIVLVANSVIDISVGSPFSIPQMFSARLGIATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTSTMRYGEEVV
431310121000000000000101122112303231000000000000011022110100000000000001111000000000000010000010001022222121210000100000000000000100110220131001212212013010100012002210234332000000002003101021002000100110030025100320000101111000001203221012002200300332202124220200000000103222222232022001100200120233222000012323434
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MLADWFSEQFSTGVLIVPCMLTLAIPGVLPRFKAEQMMPAIALIVSVIASVVIGGAGSLAFPLPALIWCAVRYTPQVTCLLTFVTGAVEIVLVANSVIDISVGSPFSIPQMFSARLGIATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTSTMRYGEEVV
1	MUSTER	3breB	0.242	0.959	2.208	threading_1	LLVD---DQAMIGEAVRRSLASEAGIDFHFCSDPQQAVAVANQI-VILQDLVMPGV---GLTLLAAYRGNPATRDIPIIVLSTKEEPTVKSAAFAAGANDYLVKLPDIRYHSRSYIALQQRDEAYRALRESQQQLLETNLVLQRLMNSDGLTGLSNRRHFDEYLEMEWRRSLSQLSLLMIDVDYFKSYNDTFGHVAGDEALRQVAGAIREGCRSSDLAARYGGEEFAMVLPGTSPGGARLLAEKVRRTVESLQISHDQPRSHLTVSIGVSTLVPG--GGGQTFRVLIEMADQALYQAKNNGRNQVGLMEQP----
2	SPARKS	3brea	0.225	0.946	4.797	threading_2	----------AVMVLLVIGEAVRRSLASEAGIDFHFCSDPQQAVAVANQIKPTVMPGVDGLTLLAAYRGNPATRDIPIIVLSTKEEPTVKSAAFAAGANDYLVKLPDIRYHSRSYIALQQRDEAYRALRESQQQLLETNLVLQRLMNSDGLTGLSNRRHFDEYLEMEWRRSLRQLSLLMIDVDYFKSYNDTFGHVAGDEALRQVAGAIREGCRSSDLAARYGGEEFAMVLPGTSPGGARLLAEKVRRTVESLQISHDRPGSHLTVSIGVSTLVP--GGGGQTFRVLIEMADQALYQAKNNGRNQVGLMEQ-----
3	PROSPECT2	1w25A	0.215	0.975	3.380	threading_3	SAVRLLEAKLMDGFTVCRKLKDDPTTRHIPALDGRGDRIQGLESGASDFLTKPIDDVMLFARVRSLTRFKLVIDELRQRQAQRVAAELKAKISAGGLAMVDPDDRGRMVKALEDPQELSARVKTQIQRKRYTDYLRNNLDHSLELAVTDQLTGLHNRRYMTGQLDSLVKRAGDPVSALLIDIDFFKKINDTFGHDIGDEVLREFALRLASNVRAIDLPCRYGGEEFVVIMPDTALADALRIAERIRMHVSGSPFTVGREMLNVTISIGVSA----TAGEGDTPEALLKRADEGVYQAKASGRNAVVGKAAH----
4	PPA-I	3i5cB	0.307	0.610	3.197	threading_4	--------------------------------------------------------------------------------------------------------------------RMKQLEDKVEELLSKNYHLENEVARLKKLVNSDGLTGLSNRRHFDEYLEMEWRRSLSQLSLLMIDVDYFKSYNDTFGHVAGDEALRQVAGAIREGCRSSDLAARYGGEEFAMVLPGTSPGGARLLAEKVRRTVESLQISHDQPRSHLTVSIGVSTLVPG--GGGQTFRVLIEMADQALYQAKNNGRNQVGLMEQ-----
5	HHPRED-l	1w25_A	0.254	0.924	6.356	threading_5	ILLDFLTKPIDDVMLFARSLTRFKLREAGRRLDGVDDNERQAQRVAAELGEHESDPEKA--------KISAGGPVKNFDGLRFTAALRMVKALEIGVND-ILSRPIDPQEL-SARV------KTQIQRKRYTDYLRNNLDHSLELAVTDQLTGLHNRRYMTGQLDSLATLGGDPVSALLIDIDFFKKINDTFGHDIGDEVLREFALRLASNVRAIDLPCRYGGEEFVVIMPDTALADALRIAERIRMHVSGSPFTVGREMLNVTISIGVSA----TAGEGDTPEALLKRADEGVYQAKASGRNAVVGKAAH----
6	HHPRED-g	1w25_A	0.242	0.930	5.718	threading_6	ANVRLLEAKLTA----------EYYEVS----TAMDGPTALAMAARDLPDIIDMMPGMDGFTVCRKLKDDPTTRHIPVVLITALDGRGDRIQGLESGASDFLTKPIDDVMLFARVRSLTRFKLVQIQRKRYTDYLRNNLDHSLELAVTDQLTGLHNRRYMTGQLDSLVKRAGDPVSALLIDIDFFKKINDTFGHDIGDEVLREFALRLASNVRAIDLPCRYGGEEFVVIMPDTALADALRIAERIRMHVSGSPFTVAREMLNVTISIGVSATA----GEGDTPEALLKRADEGVYQAKASGRNAVVGKAAH----
7	SP3	3i5aa	0.222	0.959	4.189	threading_7	LLVD---DQAMIGEAVRRGLAGHESIDFHFCADPHQAIAQAVQIKPTVILQDLVMPGLDGLTLVREYRSNPLTRDIPIIVLSTKEDPLIKSAAFAAGANDYLVKLPDIRYHSRSYMTLLQRDEAYRALRVSQQQLLDTNLVLQRLMNSDGLTGLSNRRHFDEYLELEWRRATRQLSLLMIDVDYFKAYNDNFGHLEGDEALRQVAKAIRNSCRPSDLPARYGGEEFAMVLPNTSPGGARLLAEKLRQSVAGMNIPHPVPGSSLTVSIGVATV---TPQVGQHSRQLILDADKGLYLAKNNGRNQVAAG-------
8	SAM-T99	2v0nA	0.230	0.940	4.802	threading_8	------GRRMGVIAGAAARLDGLGGRVLIVDDNERQAQRVAAELGVEHRPVIESDPEKAKISAGGPVDLVIVNAAAKNFDGLRFTAALRSEERTRQLPVLAMVDPDDRGRMVKALEIGSARVKTQIQRKRYTDYLRNNLDHSLELAVTDQLTGLHNRRYMTGQLDKRATLGGDPVSALLIDIDFFKKINDTFGHDIGDEVLREFALRLASNVRAIDLPCRYGGEEFVVIMPDTALADALRIAERIRMHVSGSPFTHGREMLNVTISIGVSATAGE----GDTPEALLKRADEGVYQAKASGRNAVV---------
9	MUSTER	3i5cB	0.307	0.610	2.054	threading_9	--------------------------------------------------------------------------------------------------------------------RMKQLEDKVEELLSKNYHLENEVARLKKLVNSDGLTGLSNRRHFDEYLEMEWRRSLSQLSLLMIDVDYFKSYNDTFGHVAGDEALRQVAGAIREGCRSSDLAARYGGEEFAMVLPGTSPGGARLLAEKVRRTVESLQISHDQPRSHLTVSIGVSTLVPG--GGGQTFRVLIEMADQALYQAKNNGRNQVGLMEQ-----
10	SPARKS	3i5aa	0.243	0.927	4.566	threading_10	----------SAMVLLVAMIGEA-VRRGLAGHESIDFHFAIAQAVQILQDLVMPGLD--GLTLVREYRSNPLTRDIPIIVLSTKEDPLIKSAAFAAGANDYLVKLPDIRYHSRSYMTLLQRDEAYRALRVSQQQLLDTNLVLQRLMNSDGLTGLSNRRHFDEYLELEWRRATRQLSLLMIDVDYFKAYNDNFGHLEGDEALRQVAKAIRNSCRPSDLPARYGGEEFAMVLPNTSPGGARLLAEKLRQSVAGMNIPHPVPGSSLTVSIGVATV---TPQVGQHSRQLILDADKGLYLAKNNGRNQVAAG-------

Predicted Tertiary Structure


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TM-score=0.670 to 2v0nA SCOP code=c.23.1.1	TM-score=0.666 to 2v0nA SCOP code=c.23.1.1	TM-score=0.669 to 2v0nA SCOP code=c.23.1.1	TM-score=0.717 to 2v0nA SCOP code=c.23.1.1	TM-score=0.673 to 2v0nA SCOP code=c.23.1.1