Template-based Modeling Results for YNCA_ECOLI

Submitted Primary Sequence

>Length 172
MSIRFARKADCAAIAEIYNHAVLYTAAIWNDQTVDADNRIAWFEARTLAGYPVLVSEENGVVTGYASFGDWRSFDGFRHTVEHSVYVHPDHQGKGLGRKLLSRLIDEARDCGKHVMVAGIESQNQASLHLHQSLGFVVTAQMPQVGTKFGRWLDLTFMQLQLDERTEPDAIG
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170

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Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MSIRFARKADCAAIAEIYNHAVLYTAAIWNDQTVDADNRIAWFEARTLAGYPVLVSEENGVVTGYASFGDWRSFDGFRHTVEHSVYVHPDHQGKGLGRKLLSRLIDEARDCGKHVMVAGIESQNQASLHLHQSLGFVVTAQMPQVGTKFGRWLDLTFMQLQLDERTEPDAIG
CEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEECCEEEEEEEEEECCCCHHHCCEEEEEEEECHHHHCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHCCCEEEEEEECEEEECCEEEEEEEEEEECCCCCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MSIRFARKADCAAIAEIYNHAVLYTAAIWNDQTVDADNRIAWFEARTLAGYPVLVSEENGVVTGYASFGDWRSFDGFRHTVEHSVYVHPDHQGKGLGRKLLSRLIDEARDCGKHVMVAGIESQNQASLHLHQSLGFVVTAQMPQVGTKFGRWLDLTFMQLQLDERTEPDAIG
2201202420021003001200322211133321313211100222122200000012221000000002122121121001000001221222100220012002103412110000001131210020022020110010210002111000000000203343335235
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MSIRFARKADCAAIAEIYNHAVLYTAAIWNDQTVDADNRIAWFEARTLAGYPVLVSEENGVVTGYASFGDWRSFDGFRHTVEHSVYVHPDHQGKGLGRKLLSRLIDEARDCGKHVMVAGIESQNQASLHLHQSLGFVVTAQMPQVGTKFGRWLDLTFMQLQLDERTEPDAIG
1	MUSTER	3dr8A	0.833	0.977	3.393	threading_1	NTIRFADKADCAAITEIYNHAVLHTAAIWNDRTVDTDNRLAWYEARQLLGYPVLVSEENGVVTGYASFGDWRSFDGFRYTVEHSVYVHPAHQGKGLGRKLLSRLIDEARRCGKH-VVAGIESQNAASIRLHHSLGFTVTAQ-PQVGVKFGRWLDLTFQLQ-LDEHAAPDAC-
2	SPARKS	2jlma	0.363	0.994	3.198	threading_2	RFVECTEDQHALEILEILNDAIINSTALYDYKPRSKESMAAWFATKRQNNFPIIGAVNVGQLLGFASWGSFRAFPAYKYTVEHSVYIHKDYRGLGLSKHLMNELIKRAVESEVHVMVGCIDATNVASIQLHQKLGFIHSGTIQQAGFKFGRWLDAAFYQLTLDTPLHPQDD-
3	PROSPECT2	2jlmA	0.368	0.994	3.713	threading_3	RFVECTEDQHALEILEILNDAIINSTALYDYKPRSKESMAAWFATKRQNNFPIIAVNEVGQLLGFASWGSFRAFPAYKYTVEHSVYIHKDYRGLGLSKHLMNELIKRAVESEVHVMVGCIDATNVASIQLHQKLGFIHSGTIQQAGFKFGRWLDAAFYQLTLDTPLHPQD-D
4	PPA-I	2jlmD	0.363	0.994	3.452	threading_4	RFVECTEDQHALEILEILNDAIINSTALYDYKPRSKESMAAWFATKRQNNFPIIGAVNVGQLLGFASWGSFRAFPAYKYTVEHSVYIHKDYRGLGLSKHLMNELIKRAVESEVHVMVGCIDATNVASIQLHQKLGFIHSGTIQQAGFKFGRWLDAAFYQLTLDTPLHPQDD-
5	HHPRED-l	1yr0_A	0.560	0.924	2.070	threading_5	VELRDATVDDLSGI-EIYNDAVVNTTAIWNEVVVDLENRKDWFAARTSRGFPVIVAILDGKVAGYASYGDWRAFDGYRHTREHSVYVHKDARGHGIGKRL-QALIDHAGGNDVHVLIAAIEAENTASIRLHESLGFRVVGRFSEVGTKFGRWLDLTC-ELKL----------
6	HHPRED-g	1yr0_A	0.560	0.924	2.039	threading_6	VELRDATVDDLSGI-EIYNDAVVNTTAIWNEVVVDLENRKDWFAARTSRGFPVIVAILDGKVAGYASYGDWRAFDGYRHTREHSVYVHKDARGHGIGKRL-QALIDHAGGNDVHVLIAAIEAENTASIRLHESLGFRVVGRFSEVGTKFGRWLDLTC-ELKL----------
7	SP3	2jlma	0.368	0.994	3.272	threading_7	RFVECTEDQHALEILEILNDAIINSTALYDYKPRSKESMAAWFATKRQNNFPIIGAVEVGQLLGFASWGSFRAFPAYKYTVEHSVYIHKDYRGLGLSKHLMNELIKRAVESEVHVMVGCIDATNVASIQLHQKLGFIHSGTIQQAGFKFGRWLDAAFYQLTLDTPLHPQDD-
8	SAM-T99	3dr8A	0.823	0.953	4.302	threading_8	-TIRFADKADCAAITEIYNHAVLHTAAIWNDRTVDTDNRLAWYEARQLLGYPVLVSEENGVVTGYASFGDWRSFDGFRYTVEHSVYVHPAHQGKGLGRKLLSRLIDEARRCG-KHVVAGIESQNAASIRLHHSLGFT-VTAQPQVGVKFGRWLDLTF-QLQLDEHAAP----
9	MUSTER	1yvoB	0.578	0.965	3.270	threading_9	ASIRDAGVADLPGILAIYNDAVGNTTAIWNETPVDLANRQAWFDTRARQGYPILVASDAGEVLGYASYGDWRPFEGFRGTVEHSVYVRDDQRGKGLGVQLLQALIERARAQGLH-VVAAIESGNAASIGLHRRLGFEISGQ-PQVGQKFGRWLDLTFQLNLDPTRSAP----
10	SPARKS	1yr0a	0.547	0.924	2.973	threading_10	VELRDATVDDLSGI-EIYNDAVVNTTAIWNEVVVDLENRKDWFAARTSRGFPVIVAILDGKVAGYASYGDWRAFDGYRHTREHSVYVHKDARGHGIGKRLQ-ALIDHAGGNDVHVLIAAIEAENTASIRLHESLGFRVVGRFSEVGTKFGRWLDLTCELKL-----------

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.930 to 1yvoB SCOP code=d.108.1.1	TM-score=0.927 to 1yvoB SCOP code=d.108.1.1	TM-score=0.923 to 1yvoB SCOP code=d.108.1.1	TM-score=0.919 to 1yvoB SCOP code=d.108.1.1	TM-score=0.925 to 1yvoB SCOP code=d.108.1.1