Template-based Modeling Results for YNBD_ECOLI

Submitted Primary Sequence

>Length 430
MLQGAGWLLLLAPFFFFTYGSLNQFTAVQDLNSHDIPSQVFGWETAIPFLPWTIVPYWSLDLLYGFSLFVCSTTFEQRRLVHRLILATVMACCGFLLYPLKFSFIRPEVSGVTGWLFSQLELFDLPYNQSPSLHIILCWLLWRHFRQHLAERWRKVCGGWFLLIAISTLTTWQHHFIDVITGLAVGMLIDWMVPVDRRWNYQKPDQRRIKIALPYVVGAGSCIVLMELMMMIQLWWSVWLCWPVLSLLIIGRGYGGLGAITTGKDSQGKLPPAVYWLTLPCRIGMWLSMRWFCRRLEPVSKMTAGVYLGAFPRHIPAQNAVLDVTFEFPRGRATKDRLYFCVPMLDLVVPEEGELRQAVAMLETLREEQGSVLVHCALGLSRSALVVAAWLLCYGHCKTVNEAISYIRARRPQIVLTDEHKAMLRLWENR
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MLQGAGWLLLLAPFFFFTYGSLNQFTAVQDLNSHDIPSQVFGWETAIPFLPWTIVPYWSLDLLYGFSLFVCSTTFEQRRLVHRLILATVMACCGFLLYPLKFSFIRPEVSGVTGWLFSQLELFDLPYNQSPSLHIILCWLLWRHFRQHLAERWRKVCGGWFLLIAISTLTTWQHHFIDVITGLAVGMLIDWMVPVDRRWNYQKPDQRRIKIALPYVVGAGSCIVLMELMMMIQLWWSVWLCWPVLSLLIIGRGYGGLGAITTGKDSQGKLPPAVYWLTLPCRIGMWLSMRWFCRRLEPVSKMTAGVYLGAFPRHIPAQNAVLDVTFEFPRGRATKDRLYFCVPMLDLVVPEEGELRQAVAMLETLREEQGSVLVHCALGLSRSALVVAAWLLCYGHCKTVNEAISYIRARRPQIVLTDEHKAMLRLWENR
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCEEECCCHHHHCCCCEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MLQGAGWLLLLAPFFFFTYGSLNQFTAVQDLNSHDIPSQVFGWETAIPFLPWTIVPYWSLDLLYGFSLFVCSTTFEQRRLVHRLILATVMACCGFLLYPLKFSFIRPEVSGVTGWLFSQLELFDLPYNQSPSLHIILCWLLWRHFRQHLAERWRKVCGGWFLLIAISTLTTWQHHFIDVITGLAVGMLIDWMVPVDRRWNYQKPDQRRIKIALPYVVGAGSCIVLMELMMMIQLWWSVWLCWPVLSLLIIGRGYGGLGAITTGKDSQGKLPPAVYWLTLPCRIGMWLSMRWFCRRLEPVSKMTAGVYLGAFPRHIPAQNAVLDVTFEFPRGRATKDRLYFCVPMLDLVVPEEGELRQAVAMLETLREEQGSVLVHCALGLSRSALVVAAWLLCYGHCKTVNEAISYIRARRPQIVLTDEHKAMLRLWENR
3230000010000000000000000001212323301100000221011001000000000000000000011121012001000000000000000000200122130200000000001102111210000000000000100132113201100000000000000000100000000000000000000012232223322332021000100000000000000100100000000000000000010000100100133230300000000000000000001111133133111002000000022212222000000130231322331100000021112222110220010022033331100000111101000000000011131310220020022312311213301210221255
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MLQGAGWLLLLAPFFFFTYGSLNQFTAVQDLNSHDIPSQVFGWETAIPFLPWTIVPYWSLDLLYGFSLFVCSTTFEQRRLVHRLILATVMACCGFLLYPLKFSFIRPEVSGVTGWLFSQLELFDLPYNQSPSLHIILCWLLWRHFRQHLAERWRKVCGGWFLLIAISTLTTWQHHFIDVITGLAVGMLIDWMVPVDRRWNYQKPDQRRIKIALPYVVGAGSCIVLMELMMMIQLWWSVWLCWPVLSLLIIGRGYGGLGAITTGKDSQGKLPPAVYWLTLPCRIGMWLSMRWFCRRLEPVSKMTAGVYLGAFPRHIPAQNAVLDVTFEFPRGRATKDRLYFCVPMLDLVVPEEGELRQAVAMLETLREEQGSVLVHCALGLSRSALVVAAWLLCYGHCKTVNEAISYIRARRPQIVLTDEHKAMLRLWENR
1	PROSPECT2	1jdha	0.082	0.907	1.697	threading_1	VVNKAAVMVHRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRL--------AGGLQKMVALLNK--------TNVKFLAITTDCLQILAYGNQESKLIILLWTTSRVLKVLSVCSSNKPAIVEAGGMQALCLWTLRNLSDAATKQEGMEGLLGTLVQLVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEP-------AICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPL-----------REQGAIPRLVQLLVRAHQDTQF------VEGVRMEEIVEGCTGALHILARDVHNRIVIRFVQLLYSPIAQDKEAAEAIEAFRMS
2	SAM-T99	1oheA	0.121	0.674	3.235	threading_2	------------------------------------------------------------DRLCFA-----------------------------------ILYSRPKSANVHYFSIDNELEYENFYADFGPLNLAMVYRYCCKINKKLKSIT----MLRKKIVHFTGSDQRKQ-------ANAAFLVGCYMVIYLGRTPEEAYRILIFTSYIPFRDAAYGSCNFYITLLDCFHAVKKAMQYGFLNFNSFNLDEYEHYEKAENGDLNWIIPDRFIAFCGPHSRA--------------------------RLFKNHNVTTIIRLNKRMYDAFTDAGFDHHDLFFADGSTPTDAIVK---EFLDICENAEGAIAVHSKAGLGRTGTLIACYIMKH-YRMTAAETIAWVRICRPGSVIGPQQQFLVMK----
3	PROSPECT2	3a6pA1	0.085	0.877	1.669	threading_3	AVTVMMCVPCGLRLAIVRHFGLQILEHVVKFRWNGMSELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHLIELDTLSKQGETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLT------QNMERIFSFLLNTLQENVNKYTSQESKAQANCRVGVAALNTLAGYMSHITAENCKLLEILCLLLNEQELQLGSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLCQVLCALGNQLCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRHEILSRDPLL-------------------------------------LAIIPKYLRASMTNLVKM------GFPSKTDSPSCEYSRFD----FDSDEDFNAFFNSSRAQQGDPKTSFQMAGEWLKY
4	SPARKS	2y96a	0.214	0.337	3.226	threading_4	-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AFELERLFWKGSYTHVNEVWPKLYIGDEATALDGFTHVLNAAHGRWNVYRDMDIQYHGVEADDLPTFDSVFFYPAAAFIDRASDDHSKILVHCVMGRSRSATLVLAYLMIHKDM-TLVDAIQQVAKNRC-VLPNRGFLKQLRELDKQ
5	PPA-I	3rgoA	0.242	0.307	2.060	threading_5	---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------WYHRIDHTVLLGALPLLDENVRGVITMNEEYETRFLCNGVEQLRLSTVDMTVPTLANLHKGVQFALKYQALGQCVYVHCKAGRSRSATMVAAYLIQVHNW-SPEEAIEAIAKIRSHISIRPSQLEVLKEFHKE
6	PROSPECT2	3a0oA3	0.063	0.733	1.627	threading_6	WLNSEQLSAFHCGWAEFYEKSVEPWLERPVMPEPQPYPNNTRVATLWRQMYIDCQEVIYAIRHLAIAGRVLGRDDLLDASRKWLLAV------------AAWDTKGATSRAYNDEAGFRV--------------VVALAWGYDWLYDHLSEDERRTVRSVLLERTREVADHVI-----------------------AHARIHVFPYDSHAVRSLSAVLTPACIALQGESDEAGEWLDYTVEFLATLY-------------SPWAGTDGGWAHYWMTGMAYLIEAANLIRSYI-----------------------------------------------------GYDLYQRPFFQNTGRFPLYTKAPGTRRANFGDDSTLGKLGYNVRQFAGVTGNGHYQWYFDHIKADATGTEMAFYLNFDDLVYRHD
7	HHPRED-l	2esb_A	0.237	0.305	2.685	threading_7	--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SGLSQITKSLYISNGVASSNQITMVINVSVEVVNT-LYEDIQYMQVPVADSPNSRLDFFDPIADHIHSVEMKQGRTLLHCAAGVSRSAALCLAYLMKYHAM-SLLDAHTWTKSCRPIIRPNSGFWEQLIHYEF-
8	PROSPECT2	1b3ua	0.100	0.995	1.609	threading_8	RLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYP--RVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLAAVEACVNIAQLLPQEDLEALVMPTLRQAARVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVMGLSPILGKDNTIEHLLPLFQLKDECPEISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKLVDHVYAIREAATSNLKKLVEKFGKKVLAMSGDPNYLHRMTTLFVLRMAGDPVANKSLQKIGPILDNSTLQSEVKPILEKLTQD
9	HHPRED-g	2g6z_A	0.230	0.314	2.497	threading_9	-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GSHMGPVEILPFLYLGSAYHASLHITALLNVSRRTSEAC-MTHLHYKWIPVEDSHTADISHFQEAIDFIDCVREKGGKVLVHSEAGISRSPTICMAYLMKTKQF-RLKEAFDYIKQRRSMVSPNFGFMGQLLQYESE
10	MUSTER	3a0oA	0.101	0.963	0.889	threading_10	TLWRQMYIDCQEVIYAIRHLAIAGRVLGRDDLLDASRKWLLAVAAWDTKGADEAGFRVVVALAWGYDWLYDHLSEDERRTVRSVLLERTREVADHVIAHARIHVFPYDSHAVRSLSAVLTPACIALQGESDEAGEWLDYTVEFLATLYSPWAGTPHYWMTGMAYLIEAANLIRSYIYDLPFFQNTGRFPLYTKAPGTRRASTLGDLPGLKLGYNVRQFAGVTGNGHYQWYFDHIKADAFYNYGWWDLNFDDLVYRHDYPQV-EAVSPADLPALAVF------IGWATIQKDMEDPDRHLQFVFKSSPYGSLSSHGDQNAFVLYAAIQSGYYVAFNSQMHLNAVLIGYAEKDKALARRAAGRIVSVEEQPGHVRIV--------GDATAAYQVANPLVQKVLRETHFVNDSYFVIV-EPQELQWLCHTLGA

Predicted Tertiary Structure


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TM-score=0.611 to 1wa5B SCOP code=a.118.1.1	TM-score=0.477 to 1d5rA SCOP code=b.7.1.1	TM-score=0.762 to 1oheA SCOP code=c.45.1.1	TM-score=0.580 to 1qgkA SCOP code=a.118.1.1	TM-score=0.486 to 1d5rA SCOP code=b.7.1.1