Template-based Modeling Results for YNBC_ECOLI

Submitted Primary Sequence

>Length 585
MENSRIPGEHFFTTSDNTALFYRHWPALQPGAKKVIVLFHRGHEHSGRLQHLVDELAMPDTAFYAWDARGHGKSSGPRGYSPSLARSVRDVDEFVRFAASDSQVGLEEVVVIAQSVGAVLVATWIHDYAPAIRGLVLASPAFKVKLYVPLARPALALWHRLRGLFFINSYVKGRYLTHDRQRGASFNNDPLITRAIAVNILLDLYKTSERIIRDAAAITLPTQLLISGDDYVVHRQPQIDFYQRLRSPLKELHLLPGFYHDTLGEENRALAFEKMQSFISRLYANKSQKFDYQHEDCTGPSADRWRLLSGGPVPLSPVDLAYRFMRKAMKLFGTHSSGLHLGMSTGFDSGSSLDYVYQNQPQGSNAFGRLVDKIYLNSVGWRGIRQRKTHLQILIKQAVADLHAKGLAVRVVDIAAGHGRYVLDALANEPAVSDILLRDYSELNVAQGQEMIAQRGMSGRVRFEQGDAFNPEELSALTPRPTLAIVSGLYELFPENEQVKNSLAGLANAIEPGGILIYTGQPWHPQLEMIAGVLTSHKDGKPWVMRVRSQGEMDSLVRDAGFDKCTQRIDEWGIFTVSMAVRRDN
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MENSRIPGEHFFTTSDNTALFYRHWPALQPGAKKVIVLFHRGHEHSGRLQHLVDELAMPDTAFYAWDARGHGKSSGPRGYSPSLARSVRDVDEFVRFAASDSQVGLEEVVVIAQSVGAVLVATWIHDYAPAIRGLVLASPAFKVKLYVPLARPALALWHRLRGLFFINSYVKGRYLTHDRQRGASFNNDPLITRAIAVNILLDLYKTSERIIRDAAAITLPTQLLISGDDYVVHRQPQIDFYQRLRSPLKELHLLPGFYHDTLGEENRALAFEKMQSFISRLYANKSQKFDYQHEDCTGPSADRWRLLSGGPVPLSPVDLAYRFMRKAMKLFGTHSSGLHLGMSTGFDSGSSLDYVYQNQPQGSNAFGRLVDKIYLNSVGWRGIRQRKTHLQILIKQAVADLHAKGLAVRVVDIAAGHGRYVLDALANEPAVSDILLRDYSELNVAQGQEMIAQRGMSGRVRFEQGDAFNPEELSALTPRPTLAIVSGLYELFPENEQVKNSLAGLANAIEPGGILIYTGQPWHPQLEMIAGVLTSHKDGKPWVMRVRSQGEMDSLVRDAGFDKCTQRIDEWGIFTVSMAVRRDN
CCCCCCCCEEEEECCCCCEEEEEECCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCCCCCCCEEEEECCCCCCCCHHHEEHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHCCCCCCEEEECCHHHHCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEECCCHHHHHHHHHHHCCCHHHHEECCCCCEEEEEEEECCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MENSRIPGEHFFTTSDNTALFYRHWPALQPGAKKVIVLFHRGHEHSGRLQHLVDELAMPDTAFYAWDARGHGKSSGPRGYSPSLARSVRDVDEFVRFAASDSQVGLEEVVVIAQSVGAVLVATWIHDYAPAIRGLVLASPAFKVKLYVPLARPALALWHRLRGLFFINSYVKGRYLTHDRQRGASFNNDPLITRAIAVNILLDLYKTSERIIRDAAAITLPTQLLISGDDYVVHRQPQIDFYQRLRSPLKELHLLPGFYHDTLGEENRALAFEKMQSFISRLYANKSQKFDYQHEDCTGPSADRWRLLSGGPVPLSPVDLAYRFMRKAMKLFGTHSSGLHLGMSTGFDSGSSLDYVYQNQPQGSNAFGRLVDKIYLNSVGWRGIRQRKTHLQILIKQAVADLHAKGLAVRVVDIAAGHGRYVLDALANEPAVSDILLRDYSELNVAQGQEMIAQRGMSGRVRFEQGDAFNPEELSALTPRPTLAIVSGLYELFPENEQVKNSLAGLANAIEPGGILIYTGQPWHPQLEMIAGVLTSHKDGKPWVMRVRSQGEMDSLVRDAGFDKCTQRIDEWGIFTVSMAVRRDN
554242112200212321100001012233312100000030120011012002101313000000002110302123010200220030012002100331322222000000010000000002212320200000010031322021020000001202121122221303101313310111231220131000200110020022013102212000000001312102231012003304232210100221112011232121002201100130132324423223322222112113221012121011100010012012001000200200111111211100000112221110000000300010000100120111022003200320344212010000001102100200331322210001212320022012003422121101012010121300230112110000000011023121012001100300322000000021212101000000112332220011022221012003312023021101421000000022356
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MENSRIPGEHFFTTSDNTALFYRHWPALQPGAKKVIVLFHRGHEHSGRLQHLVDELAMPDTAFYAWDARGHGKSSGPRGYSPSLARSVRDVDEFVRFAASDSQVGLEEVVVIAQSVGAVLVATWIHDYAPAIRGLVLASPAFKVKLYVPLARPALALWHRLRGLFFINSYVKGRYLTHDRQRGASFNNDPLITRAIAVNILLDLYKTSERIIRDAAAITLPTQLLISGDDYVVHRQPQIDFYQRLRSPLKELHLLPGFYHDTLGEENRALAFEKMQSFISRLYANKSQKFDYQHEDCTGPSADRWRLLSGGPVPLSPVDLAYRFMRKAMKLFGTHSSGLHLGMSTGFDSGSSLDYVYQNQPQGSNAFGRLVDKIYLNSVGWRGIRQRKTHLQILIKQAVADLHAKGLAVRVVDIAAGHGRYVLDALANEPAVSDILLRDYSELNVAQGQEMIAQRGMSGRVRFEQGDAFNPEELSALTPRPTLAIVSGLYELFPENEQVKNSLAGLANAIEPGGILIYTGQPWHPQLEMIAGVLTSHKDGKPWVMRVRSQGEMDSLVRDAGFDKCTQRIDEWGIFTVSMAVRRDN
1	MUSTER	3jw8A	0.219	0.468	1.221	threading_1	PQSIPYQDLPHLVNADGQYLFCRYWKPTG-TPKALIFVSHGAGEHSGRYEELARL--GLDLLVFAHDHVGHGQSEGER-VVSDFHVFVRDVLQHVDSQ---KDYPGLPVFLLGHSGGAIAILTAAERP-GHFAGVLISPLVLANPESATFKVLAAKVLNLVLPNLSLGPI-DSSVLSRNKTEVDIYNSDPLICRGLKVCFGIQLLNAVSRVERALPKLTVPFLLLQGSADRLCDSKGAYLL-ELAKSQDKTLKIYEGAYHVLHKELPVTNSVFHEINWVSQRTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2	SPARKS	3pe6a	0.229	0.479	3.816	threading_2	PQSIPYQDLPHLVNADGQYLFCRYWAPT-GTPKALIFVSHGAGEHSGRYEELARMLMGLDLLVFAHDHVGHGQSEGERMVVSDFHVFVRDVLQHVDSMQKDY--PGLPVFLLGHSMGGAIAILTAAERPGHFAGMVLISPLVLANSATTFKVLAAKVLNSVLPNLSS-GPIDSSVLSRNKTEVDIYNSDPLICAGLKVCFGIQLLNAVSRVERALPKLTVPFLLLQGSADRLCDSKGAYLLMELAKSQDKTLKIYEGAYHVLHKELPTNSVFHEINMWVSQRTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3	PROSPECT2	3hjuA	0.230	0.482	2.576	threading_3	PQSIPYQDLPHLVNADGQYLFCRYWKPTGT-PKALIFVSHGAGEHSGRYEELARMLMGLDLLVFAHDHVGHGQSEGERMVVSDFHVFVRDVLQHVDSMQKDYP--GLPVFLLGHSMGGAIAILTAAERPGHFAGMVLISPLVLANPESAFKVLAAKVLNLVLPNLSLGPI-DSSVLSRNKTEVDIYNSDPLICRGLKVCFGIQLLNAVSRVERALPKLTVPFLLLQGSADRLCDSKGAYLLMELAKSQDKTLKIYEGAYHVLHKELPTNSVFHEINMWVSQRTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TA
4	PPA-I	3jw8A	0.218	0.470	1.916	threading_4	PQSIPYQDLPHLVNADGQYLFCRYWKPT-GTPKALIFVSHGAGEHSGRYEELARL--GLDLLVFAHDHVGHGQSEGER-VVSDFHVFVRDVLQHVDSQ---KDYPGLPVFLLGHSGGAIAILTAAER-PGHFAGVLISPLVLANPESATTFKVLAAKVLNLVLPNLSLGPIDSSVLSRNKTEVDIYNSDPLIRAGLKVCFGIQLLNAVSRVERALPKLTVPFLLLQGSADRLCDSKGAYLL-ELAKSQDKTLKIYEGAYHVLHKELPVTNSVFHEINWVSQRTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5	HHPRED-l	3hju_A	0.227	0.482	1.170	threading_5	PQSIPYQDLPHLVNADGQYLFCRYWKPT-GTPKALIFVSHGAGEHSGRYEELARMLMGLDLLVFAHDHVGHGQSEGERMVVSDFHVFVRDVLQHVDSMQKDY--PGLPVFLLGHSMGGAIAILTAAERPGHFAGMVLISPLVLANPESAFKVLAAKVLNLVLPNLSL-GPIDSSVLSRNKTEVDIYNSDPLIRAGLKVCFGIQLLNAVSRVERALPKLTVPFLLLQGSADRLCDSKGAYLLMELAKSQDKTLKIYEGAYHVLHKELVTNSVFHEINMWVSQRTATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6	HHPRED-g	3hju_A	0.230	0.482	1.243	threading_6	TPQSIPYQLPHLVNADGQYLFCRYWKPT-GTPKALIFVSHGAGEHSGRYEELARMLMGLDLLVFAHDHVGHGQSEGERMVVSDFHVFVRDVLQHVDSMQKDYP--GLPVFLLGHSMGGAIAILTAAERPGHFAGMVLISPLVLANPESAFKVLAAKVLNLVLPNLSLG-PIDSSVLSRNKTEVDIYNSDPLICAGLKVCFGIQLLNAVSRVERALPKLTVPFLLLQGSADRLCDSKGAYLLMELAKSQDKTLKIYEGAYHVLHKELVTNSVFHEINMWVSQRTATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7	SP3	3pe6a	0.229	0.479	3.956	threading_7	PQSIPYQDLPHLVNADGQYLFCRYWAPT-GTPKALIFVSHGAGEHSGRYEELARMLMGLDLLVFAHDHVGHGQSEGERMVVSDFHVFVRDVLQHVDSMQKD--YPGLPVFLLGHSMGGAIAILTAAERPGHFAGMVLISPLVLANSATTFKVLAAKVLNSVLPNLSS-GPIDSSVLSRNKTEVDIYNSDPLICAGLKVCFGIQLLNAVSRVERALPKLTVPFLLLQGSADRLCDSKGAYLLMELAKSQDKTLKIYEGAYHVLHKELPTNSVFHEINMWVSQRTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8	SAM-T99	3jw8A	0.238	0.446	3.457	threading_8	----------HLVNADGQYLFCRYWKPTGT-PKALIFVSHGAGEHSGRYEELARLGLDL--LVFAHDHVGHGQSEGERVV-SDFHVFVRDVLQHVDSQ-KDY--PGLPVFLLGHS-GGAIAILTAAERPGHFAG-VLISPLVLAESATTFKVLAAKVLNLVLPNLSL-GPIDSSVLSRNKTEVDIYNSDPLICRGLKVCFGIQLLNAVSRVERALPKLTVPFLLLQGSADRLCDSKGAYLLELA-KSQDKTLKIYEGAYHVLHKELPTNSVFHEI-NWVSQRT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9	MUSTER	3idaA	0.142	0.868	0.931	threading_9	-GNYSVASNVMVPMRDGVRLAVDLYRPDADGPVPVLLVRNDKFDVFAWSTQSWLEFVRDGYAVVIQDTRGLFASEGEF---VPHVDDEADAEDTLSWILEQ-AWCDGNVGMFGVSYLGVTQWQAAVSGVGGLKAIAPSMASADLYRAPWLLGWSAKIGTQLITSRSDARADFVQLAAILNDVAGAASVTPLAEQPLLGRLIPWVIDQVESWQSILGGLATPALITAGWYDGFV--GESLRTFVAVKDNDARLVVGPWSHSNLTGTYPIQEATTMHKAFFDRHLRGETDALAGVPKVRMGI--DEWRDEDWPLPDTAYTPFYLG------GAANTSTGGGTLSTSIS-GTESADTYLYDPADPVPSLGGTLLFHNGDNGPAQRPIHDRDDVLC-----STEVLTDP------VEVT-GTVSARLFVSSSAVDTDTAKLVDVFP------------DGRAIALCDGIVRMRYRETLV--NPTL---IEAGIYEV------ID--MLATSNVFLPGMVQVSSS--NFP---KYDRNSNT---GGVI-AREQL----------EEMCTAVNRI--RG-IVLPIIKRK--
10	SPARKS	3hjua	0.227	0.482	2.920	threading_10	PQSIPYQDLPHLVNADGQYLFCRYWKPTGT-PKALIFVSHGAGEHSGRYEELARMLMGLDLLVFAHDHVGHGQSEGERMVVSDFHVFVRDVLQHVDSMQKDY--PGLPVFLLGHSMGGAIAILTAAERPGHFAGMVLISPLVLANSATTFKVLAAKVLNLVLPNLSLG-PIDSSVLSRNKTEVDIYNSDPLICAGLKVCFGIQLLNAVSRVERALPKLTVPFLLLQGSADRLCDSKGAYLLMELAKSQDKTLKIYEGAYHVLHKELPTNSVFHEINMWVSQRTATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Predicted Tertiary Structure


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TM-score=0.588 to 1a8qA SCOP code=c.69.1.12	TM-score=0.655 to 1nx9A SCOP code=b.18.1.13	TM-score=0.587 to 1a8qA SCOP code=c.69.1.12	TM-score=0.825 to 1nx9A SCOP code=b.18.1.13	TM-score=0.598 to 1a8qA SCOP code=c.69.1.12