Template-based Modeling Results for YNAA_ECOLI

Submitted Primary Sequence

>Length 342
MAEQTSRLAIIIDSTGAKNNADNLTSSLVKMTQAGETAANSAGKVTKATEDEKNALAKLKAAIDPVGAAIDTVGRRYSELKKFFDKGLIDKEEYEFLVRKLNETTEELSGVAQAQREAEKAGKLAAAQQEAQAQAFQRMLDKIDPLAAALRNLEQQHDELNAAFASGKINGSQFENYSRKIQETRRELTGEAQAEREAAKAHDEQVVALQRLIAQLDPVGTAFNRLVEQQKQLNEAKAKGMLSPEMYEELSGKLRAMRSELEVTQSQLSKTGMSAKQTAFAMRMLPAQMTDIVVGLSTGQSPFMVLMQQGGHSAMQETRIASLPVTAIPAGMKIPCVTAGSA
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MAEQTSRLAIIIDSTGAKNNADNLTSSLVKMTQAGETAANSAGKVTKATEDEKNALAKLKAAIDPVGAAIDTVGRRYSELKKFFDKGLIDKEEYEFLVRKLNETTEELSGVAQAQREAEKAGKLAAAQQEAQAQAFQRMLDKIDPLAAALRNLEQQHDELNAAFASGKINGSQFENYSRKIQETRRELTGEAQAEREAAKAHDEQVVALQRLIAQLDPVGTAFNRLVEQQKQLNEAKAKGMLSPEMYEELSGKLRAMRSELEVTQSQLSKTGMSAKQTAFAMRMLPAQMTDIVVGLSTGQSPFMVLMQQGGHSAMQETRIASLPVTAIPAGMKIPCVTAGSA
CCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MAEQTSRLAIIIDSTGAKNNADNLTSSLVKMTQAGETAANSAGKVTKATEDEKNALAKLKAAIDPVGAAIDTVGRRYSELKKFFDKGLIDKEEYEFLVRKLNETTEELSGVAQAQREAEKAGKLAAAQQEAQAQAFQRMLDKIDPLAAALRNLEQQHDELNAAFASGKINGSQFENYSRKIQETRRELTGEAQAEREAAKAHDEQVVALQRLIAQLDPVGTAFNRLVEQQKQLNEAKAKGMLSPEMYEELSGKLRAMRSELEVTQSQLSKTGMSAKQTAFAMRMLPAQMTDIVVGLSTGQSPFMVLMQQGGHSAMQETRIASLPVTAIPAGMKIPCVTAGSA
554332210000002203210330121023013102101310131231033123202301310120020022014102202312431112331022003202301320220122132023101211222221130023013202301210220231132022012203131210220132023123212111211231131222112102301220130021022023113202213332212331023011203212221330122023101003100111320112011000001231020100022112101211201201011011103010222235
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MAEQTSRLAIIIDSTGAKNNADNLTSSLVKMTQAGETAANSAGKVTKATEDEKNALAKLKAAIDPVGAAIDTVGRRYSELKKFFDKGLIDKEEYEFLVRKLNETTEELSGVAQAQREAEKAGKLAAAQQEAQAQAFQRMLDKIDPLAAALRNLEQQHDELNAAFASGKINGSQFENYSRKIQETRRELTGEAQAEREAAKAHDEQVVALQRLIAQLDPVGTAFNRLVEQQKQLNEAKAKGMLSPEMYEELSGKLRAMRSELEVTQSQLSKTGMSAKQTAFAMRMLPAQMTDIVVGLSTGQSPFMVLMQQGGHSAMQETRIASLPVTAIPAGMKIPCVTAGSA
1	MUSTER	2ch7A	0.090	0.880	1.494	threading_1	HMKDVQT------TFSVAESIEEISKANEEITNQLLGISKEMDNISTRIESISASVQETTAGSEEISSATKNIADSAQQAASFADQS---TQLAKEAGDALKKVIEVTRMISNSAKDVERVVESFQKGAEEITSFVETINAIAEQTNLLALNAAIEAARAGEAGRGFAVIRKLAEESQQASENVRRVVNEIRSIAEDAGKVSSEITARVEEGTKLADEADEKLNSIVGAVERINEMLQNIAAAIEEQTAAVDEITTAMTENAKNAEEITNSVKEVNARLQEISASTEEVTSRVQTIRENVQMLKEIVAR--K------------------------------
2	SPARKS	3edva	0.106	0.880	0.948	threading_2	IAEREVVAG----SHELGQDYEHVTMLQERFREFARDTGNIGQERVDTVNHLADELINSHSDAATIAEWKDGLNEAWADLLELIDTRTQILAASYELHKFYHDAKEIFGRIQDKHKKLPEELGRDQNTVETLQRMHTTFEHDIQALGTQVRQLQEDAARLQAAYAG---------DKADDIQKRENEVLEAWKSLLDACESRRVRLVDTGDKFRFFSMVRDLMLWMEDVIRQIEAQEKPR--DVSSVELLMNNHQGIKAEIDARNDSFTTCIELGKSLLARKHYASEEIKEKLLQLT---EKRKEMIDKWEDRWEWLRL-----------------------
3	PROSPECT2	1u4qA	0.101	0.865	1.837	threading_3	AN-----------------KQQNFNTGIKDFDFWLSEVEALLASELASVNNLLKKHQLLEADISAHEDRLKDLNSQADSL---MTSSAFDTSQVKDKRETINGRFQRIKSMAAARRAKLNESHRLHQFFRDMDDEESWIKEKLTGVQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSDDNTIGKEEIQQRLAQFVDHWKELKQLAAARGQRLEESLEYQQFVANVEEEEAWINEKMTDYGDTLAAIQGLLKKHEAFETDFTVHKDRVNDVCANGEDLIKKNNHHVENITAKMKGLKGKVSDLEKAAAQRKAKLDE--------------------------
4	PPA-I	2ch7A	0.082	0.851	1.330	threading_4	-----------------GSHMKDVQTETFSVAESIEEISKANEEITNQLLGISKEMDNISTRIESISASVQETTAGSEEISSATKN---IADSAQQAASFADQSTQLAKEAGDALKKVIEVTRMISNSAKDVERVVESFQKGAEEITSFVETINAIAEQTNLLALNAAIERKLAEESQQASENVRRVVNEIRSIAEDAGKVSSEITARVEEGTKLADEADEKLNSIVGAVERINEMLQNIAAAIEEQTAAVDEITTAMTENAKNAEEITNSVKEVNARLQEISASTEEVTSRVQTIRENVQMLKEIVARYK-------------------------------
5	HHPRED-l	1qu7_A	0.138	0.658	5.909	threading_5	-------------------RTEQQAASLEQTAASMEQLTATVKQNAENARQASHLALSASETAQRGGKVVDNVVQTMRDISTS----SQKIADIISVIDGIAFQTNALNAAVEAARAGEQGRGFAVVAGEVRNLA-QRSAQAAREIKSLIEDSVGKVDVGS----------TLVESAGETMAEIVSAVTRVTDIMGEIASASDEQSRGIDQVGLAVAEMDRVTQQNAALVEQ-------SAAAAAALEEQASRLTEAVAVFRIQQQ----------------------------------------------------------------------------
6	HHPRED-g	1qu7_A	0.088	0.664	6.423	threading_6	-----------------------------------------------RTEQQAASLEQTAASMEQLTATVKQNAENARQASHLALSASETAQRGGKVVDNVVQTMRDISTSSQ--KIADIISVIDGIAFQTNILALNAAVEAARAGEQG-RGFAVVAGEVRNLAQRSAQAAREIKSLIEDSVGKVD-----------------VGSTLVESAGETMAEIVSAVTRVTDIMGEIASASDEQSRGIDQVGLAVAEMDRVTQQNAA--------------LVEQSAAAAAALEEQASRLTEAVAVFRIQQQ----------------------------------
7	SP3	3edva	0.100	0.904	0.648	threading_7	EVDD---LEQWIAEREVVAGSHELGQDYEHVTMLQERFREFARDTGNIGQERVDTVNHLADELINSGSDAATIAEWKDGLNEAWADLLELIDTRTQILAASYELHKFYHDAKEIFGRIQDKHKKLPEELGRDQNTVETLQRMHTTFEHDIQALGTQVRQLQEDAAR--LQAAYAGDKADDIQKRENEVLEAWKSLLDACESRRVRLVDTGDKFRFFSMVRDLMLWMEDVIRQIEAQEKPR--DVSSVELLMNNHQGIKAEIDARNDSFTTCIELGKSLLARKHYASEEIKEKLLQLT----EKRKEMID--KWEDRWEWLR-L-------------------
8	SAM-T99	1pgjA	0.159	0.459	0.676	threading_8	-----------------------------------------------------------------------SMDVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNL---------------------------------------------------KAFETMEAFAASLKKPRK----------------------ALILVQAGAATDSTIEQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFLGMGISGGEEG-----------------------------------------GPAFFPGGVWEEIRPIVEAAAA
9	MUSTER	1u4qA	0.115	0.863	1.090	threading_9	-----------------ANKQQNFNTGIKDFDFWLSEVEALLAS-LASVNNLLKKHQLLEADISAHEDRLKDLNSQADSLMTSSA---FDTSQVKDKRETINGRFQRIKSMAAARRAKLNESHRLHQFFRDMDDEESWIKEKKLLVLTGVQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSDDKEEIQQRLAQFVDHWKELKQLAAARGQRLEESLEYQQFVANVEEEEAWINEKMTLVASTLAAIQGLLKKHEAFETDFTVHKDRVNDVCANGEDLIKKNNHHVENITAKMKGLKGKVSDLEKAAAQRKAKLDE--------------------------
10	SPARKS	3kbta	0.102	0.772	0.872	threading_10	-------------------EAQQYYLDADEAEAWIGEQELYVISDEEGAIVMLKRHLRQQRAVEDYGRNIKQLASRAQGLLS---AGHPEGEQIIRLQGQVDKHYAGLKDVAEERKRKLENMYHLFQLKRETDDLEQWISEKELVFDHVTLLRDKFRDFARETGAIGQERVDNVNAFIERLIDAAATIAEWKDGLNEMWADLLELIDTRMQLLAASYDLHRYFYTGAEILGLIDEKHREFERDVHLLGVQVQQFQDVATRLQTAGEKAEAIQNKEQEVSAAWQALL--------------------------------------------------------

Predicted Tertiary Structure


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TM-score=0.661 to 2ch7A SCOP code=h.4.5.1	TM-score=0.685 to 2ch7A SCOP code=h.4.5.1	TM-score=0.660 to 1cunA SCOP code=a.7.1.1	TM-score=0.544 to 1s35A SCOP code=a.7.1.1	TM-score=0.689 to 2ch7A SCOP code=h.4.5.1