Template-based Modeling Results for YMFN_ECOLI

Submitted Primary Sequence

>Length 455
MSTKLTGYVWDGCAASGMKLSSVAIMARLADFSNDEGVCWPSIETIARQIGAGMSTVRTAIARLEAEGWLTRKARRQGDGSSPHCAVVDEYHEHATDALYTTMLTGMGARRQPLMWAITTAGYNIEGPCYDKRREVIEMLNGSVPNDELFGIIYTVDEGDDWTDPQVLEKANPNIGVSVYREFLLSQQQRAKNNARLANVFKTKHLNIWASARSAYFNLVSWQSCEDKSLTLEQFEGQPCILAFDLARKLDMNSMARLYTREIDGKTHYYSVAPRFWVPYDTVYSVEKNEDRRTAERFQKWVEMGVLTVTDGAEVDYRYILEEAKAANKISPVSESPIDPFGATGLSHDLADEDLNPVTIIQNYTNMSDPMKELEAAIESGRFHHDGNPIMTWCIGNVVGKTIPGNDDVVKPVKEQAENKIDGAVALIMAVGRAMLYEKEDTLSDHIESYGIRSL
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MSTKLTGYVWDGCAASGMKLSSVAIMARLADFSNDEGVCWPSIETIARQIGAGMSTVRTAIARLEAEGWLTRKARRQGDGSSPHCAVVDEYHEHATDALYTTMLTGMGARRQPLMWAITTAGYNIEGPCYDKRREVIEMLNGSVPNDELFGIIYTVDEGDDWTDPQVLEKANPNIGVSVYREFLLSQQQRAKNNARLANVFKTKHLNIWASARSAYFNLVSWQSCEDKSLTLEQFEGQPCILAFDLARKLDMNSMARLYTREIDGKTHYYSVAPRFWVPYDTVYSVEKNEDRRTAERFQKWVEMGVLTVTDGAEVDYRYILEEAKAANKISPVSESPIDPFGATGLSHDLADEDLNPVTIIQNYTNMSDPMKELEAAIESGRFHHDGNPIMTWCIGNVVGKTIPGNDDVVKPVKEQAENKIDGAVALIMAVGRAMLYEKEDTLSDHIESYGIRSL
CHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHCCCEECCCCCCCCHHHHHHHCCCCCCHHHHCCCEEEEEEEECCCCCCCEEEEEEEECCCCCEEEEEEEEEEECCHHHHHHHHHHHCCCCHHHHHHHHHCCCEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHCCEEECCCHHHHHHHHCEEEEECCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHCCCCCEECC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MSTKLTGYVWDGCAASGMKLSSVAIMARLADFSNDEGVCWPSIETIARQIGAGMSTVRTAIARLEAEGWLTRKARRQGDGSSPHCAVVDEYHEHATDALYTTMLTGMGARRQPLMWAITTAGYNIEGPCYDKRREVIEMLNGSVPNDELFGIIYTVDEGDDWTDPQVLEKANPNIGVSVYREFLLSQQQRAKNNARLANVFKTKHLNIWASARSAYFNLVSWQSCEDKSLTLEQFEGQPCILAFDLARKLDMNSMARLYTREIDGKTHYYSVAPRFWVPYDTVYSVEKNEDRRTAERFQKWVEMGVLTVTDGAEVDYRYILEEAKAANKISPVSESPIDPFGATGLSHDLADEDLNPVTIIQNYTNMSDPMKELEAAIESGRFHHDGNPIMTWCIGNVVGKTIPGNDDVVKPVKEQAENKIDGAVALIMAVGRAMLYEKEDTLSDHIESYGIRSL
22110000011010211021001101021110121111013003100320221221022002313220111221223231221100001200210021002001201222321100000011232301011112100211322232320000001014333220130013001201112213101210231342131011010210101022322102120022023321213203212000000003421100000001122433220000001000112001002323233212202202420001003123011310020021014202010000001001000210242312002012212211200320020022020101202001101000002113233220211344233301000000000010121233321232022110123
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MSTKLTGYVWDGCAASGMKLSSVAIMARLADFSNDEGVCWPSIETIARQIGAGMSTVRTAIARLEAEGWLTRKARRQGDGSSPHCAVVDEYHEHATDALYTTMLTGMGARRQPLMWAITTAGYNIEGPCYDKRREVIEMLNGSVPNDELFGIIYTVDEGDDWTDPQVLEKANPNIGVSVYREFLLSQQQRAKNNARLANVFKTKHLNIWASARSAYFNLVSWQSCEDKSLTLEQFEGQPCILAFDLARKLDMNSMARLYTREIDGKTHYYSVAPRFWVPYDTVYSVEKNEDRRTAERFQKWVEMGVLTVTDGAEVDYRYILEEAKAANKISPVSESPIDPFGATGLSHDLADEDLNPVTIIQNYTNMSDPMKELEAAIESGRFHHDGNPIMTWCIGNVVGKTIPGNDDVVKPVKEQAENKIDGAVALIMAVGRAMLYEKEDTLSDHIESYGIRSL
1	MUSTER	1wp9A	0.120	0.899	0.687	threading_1	IAMMIAEYRLTK-YGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTEKSPEERSKAWARAK-QTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKQAKNPLVIGLTSPGSTPEKIMEVINNLGIEHIEYRSENSPDV-----RPYVKGIRFEWVRV------DLPEIYKEVRKLLREMLR-DALKPLAETGLLESSSPDIPKKEVLRAGQIINEEAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASKEIFSDKRMKKAISLLVQAKEIGL------DHPKMDKLKEIIREQLQRKNSKIIVF-RETAKKIVNELVKDGIKAKRFVGQASK-QREQKLILDEFARGEF-------------NVLVATSVGEDLVVFYE------PVPSAIRSIQRRGRTLMAKGTRDEAYYWSSR-----
2	SPARKS	3cpea	0.080	0.820	1.362	threading_2	VAIFLAHFVC-FNKDKAVGILAHKGSMSAEVLDRTKQAIELLPDFLQPGIVEWNKG--SIELDNGSSIGAYASSPDAVRGNSFAMIYIEDCAFIPFHDSWLAIQPVISSGRRSKIIITTTPNGLN-----HFYDIWTAAVEGKS--GFEPYTAIWNSVKERLYNDEDI--------FDDGWQWSIQTING-----SSLAQFRQEHTAAFEGTSGTLISGMKLAVMDFIEVTPDDHPDRKYIATLDCSEGRGQDYHALHIIDVTDDVWEQVGVLHS-------------------------------------NTISHLILPDIVMRYLVEYNECPVYIEVSVAKSLYMDLEYEGVICDSMKQTKRTKAVGCSTLKDLIEKDKLIIHHRATIQEF--RTFSEK----GVSWAAEEGYHD-------DLVMSLVIFGWLSTQSKFIDY---------
3	PROSPECT2	3cpeA	0.083	0.818	2.081	threading_3	VVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQAIELLP----DFLQPGIVEWNKGSIELDNGSSIGAYASSPDAVNSFAMIYIEDCAFIPFHDSWLAIQPVISSGRRSKIIITTTPNGLN-----HFYDIWTAAVEGK-SGFEPYTAIWNSVKERLYNDEDIFDDG--------------WQWSIQTINGSSLAQFRQEHTAAFEGTSGTLISGMKLAVMDFIEVTPDDHPDRKYIATLDCSEGRGQDYHALHIIDVTDDVWEQVGVLHS-------------------------------------NTISHLILPDIVMRYLVEYNECPVYIELNSTGVSVAKSLYMDLEYEGVKQTKRTKAVGCSTLKDLIEKDKLIIHHRATIQEFRTFSEK------GVSWAAEE---GYHDDLVMSLVIFGWLSTQSKFIDY-------------
4	PPA-I	3qxyA	0.093	0.826	0.757	threading_4	------------------------------------LDPVACFLSWCRRVGLELSPKVAVSRQGTVAGYGMVARESVQAGELLFVVPRAALLSQHTCSIGGLLERERVAL------------QSQSGWVPLLLALLHELQAPASRWRPYFALWPELGRLEHPMFWPEEERRCLLQGTGVPEAVEKDLANIRSEYQSIVLPFMEAHPDLFSLRVRSLELYHQLVALVMAYSFQEPLEKEPNSPVMDILNHLANHNANLEYSA-----NCLRMVATQPIPKGHEIF-----NTYGQMANWQLIHMYGFVEPYPDNTDDTADIQMVTVREAALQGTKT-EAERHLVYERWDFLCKLEMGAFVIGREEVLTEEELTTTLKVLCM-----PAEEFRELKDQKREEGSLTITNI--------PKLKASWRQLLQNSVLLTLQTYATDLKTDQ-------GL
5	HHPRED-l	3cpe_A	0.082	0.809	4.990	threading_5	KTFLAHFVC--FNKDKAVGILAHKGSMSAEVLDRTKQAIELLPDFLQPG---IVEWNKGSIEL-DNGSSIGAYASDAVRGNSFAMIYIEDCAFIPNFDSWLAIQPVISSGRRSKIIITTTPNGL--NHFYDIWTAAV---EGK-SGFEPYTAIWNSVKERL---------YNDEDIFDDGWQWSIQTI---NGS--SLAQFRQEHTAAFEGTSGTLISGMKLAVMDFIEVTFKPEPDRKYIATLDCSEGQDYHALHII--D-VTDDVW-EQVGVLHS-----------------------------------NTISHLILPDIVMRYLVEYNECPVYIELNSTGVVAKSLYMLEYEGLGMKQTKRTKAVGCSTLKDLIEKDKLIIHHRATIQ-EFRTFS--EK-GV----SWA-AEEGYHDDLVMSLVIFGWLSTQSKFIDY-------------
6	HHPRED-g	3cpe_A	0.076	0.811	4.589	threading_6	AIFLAHFVCFN--KDKAVGILAHKGSMSAEVLDRTKQAIELLPDFLQPGI-VEWNKGSIEL-DNGSSIGAYASSPDAVRGNSFAMIYIEDCAFIPNFDSWLAIQPVISSGRRSKIIITTTPNGL--NHFYDIWTAAVE---GK---SGFEPYTAI------WNSVER--LYNDEDIFDDGWQWSIQTIN---GS--SLAQFRQEHTAAFEGTSGTLISGMKLAVMDFIEVDDKPEPDRKYIATLDCSEGQDYHALHIID---VTDD-VWEQVGVLHS----------------NTISHLI-------------------LPDIVMRYLVEYNECPVYIELNSTGVVAKSLYMDEYEGVICDLGMKTKAVGCSTLKDLIEKDKLIIHHRATIQ-EFRTFSE--K-GV-S-W---AAEEGYHDDLVMSLVIFGWLSTQSKFIDY-------------
7	SP3	2xwub	0.102	0.996	0.504	threading_7	YVNTLLKLIPLVLGLQEQLRQAVQMETSHGICRIAVALGENHSRALLDQVEHWQSFLALVNMIMFCTGIPGHYPVNETDILSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGFWSSDEKEQFRIYRVDISDTLMGAELLSNLYDKLGRLLTSYSWQHTEALLYGFQSITIDVNYSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLAINSVLPLVLHALGNPELSVSSVSTLKKICREYDLPVSQDVLMKQIHKTSQCMWLMQGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISPVVVVLQQVFQLIQKVLSKWLNDAQVVEACAIFEKSVKTLLDDFAP--MVPQLCEMLGRMYSTIPQASALDLTRQLVHIFAHEPAHFPPIEALFLLVTSVTLTLFQQGPRDHPDIVFMQLL
8	SAM-T99	2vxoB3	0.142	0.310	0.669	threading_8	RVICAEEPYICKDFPETNNILKIVADFSASVKKPHTLLQRVKACTTEEDQEKLMQIT-EAHNILRESGYAGKISQM---------------------------------------------------------------------------------------------------------------------------------------------PLQKQPSCQRS-------------------------------------------VVIRTFITSDFMTG---------------------IPATPGNEIPVEVVLKMVTEIKKIPGISRIMYD------------------------------------------------------------LTSKPPGT------------------------------------------------
9	MUSTER	4a2pA	0.102	0.908	0.662	threading_9	YQIELAQPAINGKNGSG-FVSILICEHHFQNMPA-VPVYEQQKNVFKHHFERQGYSVEKVIEDSDQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKLPQILGLTSVGVGNAKNIEETIEHICSLCS------YLDIQAISTVRE----NIQELQRFMPEIDVRLVKRRIHNPFAAIISNMSETEALMRTIYSKDFGTQEHWIVVTQRKCRLLDKEEESRICRALFICTEHLRKYNDAL---------------IISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTA-----------KFQEKEPELIALSKDETNENPKL-EELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPINYIKPGVNRLL-IATSNLVVLYEYSGNCILVTSKTEVVEN--YKEEMMNKAVEKIQKWDEETFAKKIHNLQMKER
10	SPARKS	1tf7a	0.106	0.892	0.830	threading_10	RSTLVS-----GTSGTG-KTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLVDEGKLFILDASPDPEGQEV--VGGFDLSALIERINYAIQK-----YRARRVSIVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARDNVVILRNVLEGERRRRTLEILKLRGTSHMKGEYPFTITDHGINIFPLGAMRLTQR-SSNVRVSSGVVRLDDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEES-------RAQLLRNAYSWGMDFEEMERQNLLKIAYPESAGLEDHLQIIKSEINDFKPARIAIDRQFVIGVTGYAKQEEITGLFTNTSDQFMGA------HSITDSHISTITDTIILL----QYVEIRGEMSRAINVFKMRGSW------------------HDKAIREFMISDKGPDIK

Predicted Tertiary Structure


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TM-score=0.710 to 1wp9A SCOP code=c.37.1.19	TM-score=0.863 to 2bw3A SCOP code=a.270.1.1	TM-score=0.433 to 2ewsA SCOP code=c.55.1.14	TM-score=0.453 to 2ewsA SCOP code=c.55.1.14	TM-score=0.619 to 1p0yB SCOP code=a.166.1.1