Template-based Modeling Results for YMFD_ECOLI

Submitted Primary Sequence

>Length 221
MVLALNYNMHGVNIRSENAAKPHTMPSRYLCEYIRSIEKNGHALDFGCGKLRYSDELISKFDEVTFLDSKRQLEREQIIRGIKTKIIDYVPRYYKNANTVAFEDVDKIIGGYDFILCSNVLSAVPCRDTIDKIVLSIKRLLKSGGETLIVNQYKSSYFKKYETGRKHLYGYIYKNSKSVSYYGLLDELAVQEICSSHGLEILKSWSKAGSSYVTVGSCNAI
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MVLALNYNMHGVNIRSENAAKPHTMPSRYLCEYIRSIEKNGHALDFGCGKLRYSDELISKFDEVTFLDSKRQLEREQIIRGIKTKIIDYVPRYYKNANTVAFEDVDKIIGGYDFILCSNVLSAVPCRDTIDKIVLSIKRLLKSGGETLIVNQYKSSYFKKYETGRKHLYGYIYKNSKSVSYYGLLDELAVQEICSSHGLEILKSWSKAGSSYVTVGSCNAI
CEEEEECCCCCEECCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCEEEEHHHHHHCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEHHHCCCEEEEEECCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MVLALNYNMHGVNIRSENAAKPHTMPSRYLCEYIRSIEKNGHALDFGCGKLRYSDELISKFDEVTFLDSKRQLEREQIIRGIKTKIIDYVPRYYKNANTVAFEDVDKIIGGYDFILCSNVLSAVPCRDTIDKIVLSIKRLLKSGGETLIVNQYKSSYFKKYETGRKHLYGYIYKNSKSVSYYGLLDELAVQEICSSHGLEILKSWSKAGSSYVTVGSCNAI
31000014231100303211312100110002004213320200000002120012002202100001242313211112111120221123224312201011012111100000000001101243103200210241042200000000131111231222331020012432321221210110002200232111001102421300001011334
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MVLALNYNMHGVNIRSENAAKPHTMPSRYLCEYIRSIEKNGHALDFGCGKLRYSDELISKFDEVTFLDSKRQLEREQIIRGIKTKIIDYVPRYYKNANTVAFEDVDKIIGGYDFILCSNVLSAVPCRDTIDKIVLSIKRLLKSGGETLIVNQYKSSYFKKYETGRKHLYGYIYKNSKSVSYYGLLDELAVQEICSSHGLEILKSWSKAGSSYVTVGSCNAI
1	MUSTER	3ou2A	0.156	0.900	1.300	threading_1	IESQLSYYRARASEYDATFVPYMDSAAPAALERLRAGNIRGDVLELASGTGYWTRHLSGLADRVTALDGSAEMIAEAGRHGL-----DNVEFRQQDLFDWTP------DRQWDAVFFAHWLAHVP-DDRFEAFWESVRSAVAPGGVVEFVD---------VTDHEVAVRRTLQDGRSFRIVKVFRSPAELTERLTALGWSCSVDEVHPGFLYATCRPGPR-
2	SPARKS	3sm3a	0.164	0.855	1.950	threading_2	--------------------------LDLYPIIHNYLQEDDEILDIGCGSGKISLELASKGYSVTGIDINSEAIRLAETAARSPG------LNQKTGGKAEFKVENASSSSFDFAVMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQNWHDFPITKEEGSFLARDPETGETEFIAHHFTEKELVFLLTDCRFEIDYFRVRTGNLGFVIIAQKLL
3	PROSPECT2	3hnrA	0.106	0.851	1.727	threading_3	---------------DIQYKEVFAHYEDILEDVVNK--SFGNVLEFGVGTGNLTNKLLLAGRTVYGIEPSREMRMIAKEKL---------------PKEFSITEGDFLSTSIDTIVSTYAFHHLTDD-EKNVAIAKYSQLLNKGGKIVFADTIFADQDAYDKTVEAAKQRGFHQLANDLQTEYYTRIPVMQTIFENNGFHVTFTRLNHFVWVMEATKQLEH
4	PPA-I	3hnrA	0.106	0.851	2.102	threading_4	---------------DIQYKEVFAHYEDILEDVVN--KSFGNVLEFGVGTGNLTNKLLLAGRTVYGIEPSREMRMIAKEKL---------------PKEFSITEGDFLSTSIDTIVSTYAFHHLTDD-EKNVAIAKYSQLLNKGGKIVFADTIFADQDAYDKTVEAAKQRGFHQLANDLQTEYYTRIPVMQTIFENNGFHVTFTRLNHFVWVMEATKQLEH
5	HHPRED-l	1im8_A	0.088	0.878	1.429	threading_5	-----------FIFDENVASVPYSNIITAIG-LAERVTADSNVYDLGCSRGAATLSARRNNVKIIGIDNSQP-VERCRQHIAAYHSEIPVEILCN-------DIRHVEIKNAS-VILNFTLQFL-PPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHLLIDLHHQFKRANGYSENV-RTDSIETHKVRLKNVGFSQVELWFQCFNFGS-IAVK---
6	HHPRED-g	3bkx_A	0.099	0.919	1.274	threading_6	-EKRLDYL-ALGPTANARTIQRRQTAHRLAIAEAWQVKPGEKILEIGCGQGDLSAVLADQSGHVTGIDIASPTLGQAWNHLLAGPLGDRLTVHFNTNLSDD--LGPIADQHFDRVVLAHSLWYFA---SANALALLFKN-AAVCDHVDVAEWSDQGHLQAA-IQGLLYAIAPSD---VANIRTLITPDTLAQIAHDNTWTYTAGT------IVEDPTLDDA
7	SP3	3sm3a	0.193	0.846	1.964	threading_7	--------------------------LDLYPIIHNYLQEDDEILDIGCGSGKISLELASKGYSVTGIDINSEAIRLAETAARSPGL------NQKTGGKAEFKVENASDSSFDFAVMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQNWHLKLYRKRYLHDFPITKEEGSFLARDPEFTEKELVFLLTDCRFEIDYFRVKTGLGFVIIAQ--KL
8	SAM-T99	3sm3A	0.186	0.756	1.887	threading_8	---------------------------------LDLYPEDDEILDIGCGSGKISLELASKGYSVTGIDINSEAIRLAETAARSPGL-NQKTGGKAEFKVENASSLSFHDSSFDFAVMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQNWHLKLYRKRYLHDFPITKEEGSFLARDHHFTEKELVFLLTDCRFEI--------------------
9	MUSTER	3hnrA	0.110	0.864	1.300	threading_9	---------------DIQYKEVFAHYEDILEDVVNK--SFGNVLEFGVGTGNLTNKLLLAGRTVYGIEPSREMRMIAKEKL-----PKEFSITEGDFLSFEV------PTSIDTIVSTYAFHHLTD-DEKNVAIAKYSQLLNKGGKIVFADTIFADQDAYDKTVEAAKQRGFHQLANDLQTEYYTRIPVMQTIFENNGFHVTFT-RLNHFVWVMEATKQLE
10	SPARKS	3dtna	0.117	0.928	1.849	threading_10	IKRKFDAVSGKYDEQRRKFIPCFDDFYGVSVSIASVDTENPDILDLGAGTGLLSAFLMEKYATFTLVDMSEKMLEIAKNR-------------FRGNLKVKYIEADYSEEKYDMVVSALSIHHLE-DEDKKELYKRSYSILKESGIFINADLVHGELNKTIWRQYVENSGLTEEEIAAGYLDKDIEMNQQLNWLKEAGFRDVSCIYKYYQFAVMFGRKT--

Predicted Tertiary Structure


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TM-score=0.745 to 2ex4A SCOP code=c.66.1.42	TM-score=0.706 to 1im8A SCOP code=c.66.1.14	TM-score=0.682 to 1ve3B SCOP code=c.66.1.43	TM-score=0.708 to 1im8A SCOP code=c.66.1.14	TM-score=0.707 to 1im8A SCOP code=c.66.1.14