Template-based Modeling Results for YMDC_ECOLI

Submitted Primary Sequence

>Length 473
MPRLASAVLPLCSQHPGQCGLFPLEKSLDAFAARYRLAEMAEHTLDVQYYIWQDDMSGRLLFSALLAAAKRGVRVRLLLDDNNTPGLDDILRLLDSHPRIEVRLFNPFSFRLLRPLGYITDFSRLNRRMHNKSFTVDGVVTLVGGRNIGDAYFGAGEEPLFSDLDVMAIGPVVEDVADDFARYWYCKSVSPLQQVLDVPEGEMADRIELPASWHNDAMTHRYLRKMESSPFINHLVDGTLPLIWAKTRLLSDDPAKGEGKAKRHSLLPQRLFDIMGSPSERIDIISSYFVPTRAGVAQLLRMVRKGVKIAILTNSLAANDVAVVHAGYARWRKKLLRYGVELYELKPTREQSSTLHDRGITGNSGASLHAKTFSIDGKTVFIGSFNFDPRSTLLNTEMGFVIESETLAQLIDKRFIQSQYDAAWQLRLDRWGRINWVDRHAKKEIILKKEPATSFWKRVMVRLASILPVEWLL
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MPRLASAVLPLCSQHPGQCGLFPLEKSLDAFAARYRLAEMAEHTLDVQYYIWQDDMSGRLLFSALLAAAKRGVRVRLLLDDNNTPGLDDILRLLDSHPRIEVRLFNPFSFRLLRPLGYITDFSRLNRRMHNKSFTVDGVVTLVGGRNIGDAYFGAGEEPLFSDLDVMAIGPVVEDVADDFARYWYCKSVSPLQQVLDVPEGEMADRIELPASWHNDAMTHRYLRKMESSPFINHLVDGTLPLIWAKTRLLSDDPAKGEGKAKRHSLLPQRLFDIMGSPSERIDIISSYFVPTRAGVAQLLRMVRKGVKIAILTNSLAANDVAVVHAGYARWRKKLLRYGVELYELKPTREQSSTLHDRGITGNSGASLHAKTFSIDGKTVFIGSFNFDPRSTLLNTEMGFVIESETLAQLIDKRFIQSQYDAAWQLRLDRWGRINWVDRHAKKEIILKKEPATSFWKRVMVRLASILPVEWLL
CCHHHHHHHHHHHHCCCCCCEEECCCHHHHHHHHHHHHHHHCCEEEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCHHHHCCCCCEEEEECCCEEEECCEECCCHHHCCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHEEEEEECCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCEEEEECCCCCHHHHHHHCEEEEEEECHHHHHHHHHHHHHHHHHHCEECCHHHCCCCCCEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCHHHHC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MPRLASAVLPLCSQHPGQCGLFPLEKSLDAFAARYRLAEMAEHTLDVQYYIWQDDMSGRLLFSALLAAAKRGVRVRLLLDDNNTPGLDDILRLLDSHPRIEVRLFNPFSFRLLRPLGYITDFSRLNRRMHNKSFTVDGVVTLVGGRNIGDAYFGAGEEPLFSDLDVMAIGPVVEDVADDFARYWYCKSVSPLQQVLDVPEGEMADRIELPASWHNDAMTHRYLRKMESSPFINHLVDGTLPLIWAKTRLLSDDPAKGEGKAKRHSLLPQRLFDIMGSPSERIDIISSYFVPTRAGVAQLLRMVRKGVKIAILTNSLAANDVAVVHAGYARWRKKLLRYGVELYELKPTREQSSTLHDRGITGNSGASLHAKTFSIDGKTVFIGSFNFDPRSTLLNTEMGFVIESETLAQLIDKRFIQSQYDAAWQLRLDRWGRINWVDRHAKKEIILKKEPATSFWKRVMVRLASILPVEWLL
34310210120024222311000033022001000210230231000000001212002100100120043102000001012022133201200232301010011121211221111121121122111100001010000001000011002233221000000010200210020002001131222133223123121122231222112211122113413322113211322121010201000111231323233121002100200120112010000100014100100120032102000001211221100010000200320042101000021223322223331121322100000000011100000000000100111010000010320022014202211231112021331231210112242200022222120022000100210112212
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MPRLASAVLPLCSQHPGQCGLFPLEKSLDAFAARYRLAEMAEHTLDVQYYIWQDDMSGRLLFSALLAAAKRGVRVRLLLDDNNTPGLDDILRLLDSHPRIEVRLFNPFSFRLLRPLGYITDFSRLNRRMHNKSFTVDGVVTLVGGRNIGDAYFGAGEEPLFSDLDVMAIGPVVEDVADDFARYWYCKSVSPLQQVLDVPEGEMADRIELPASWHNDAMTHRYLRKMESSPFINHLVDGTLPLIWAKTRLLSDDPAKGEGKAKRHSLLPQRLFDIMGSPSERIDIISSYFVPTRAGVAQLLRMVRKGVKIAILTNSLAANDVAVVHAGYARWRKKLLRYGVELYELKPTREQSSTLHDRGITGNSGASLHAKTFSIDGKTVFIGSFNFDPRSTLLNTEMGFVIESETLAQLIDKRFIQSQYDAAWQLRLDRWGRINWVDRHAKKEIILKKEPATSFWKRVMVRLASILPVEWLL
1	MUSTER	3hsiB	0.176	0.877	2.018	threading_1	TKRAEQNLNNLPFLALQAEQIEFLGSSAEFKTQIIELIRNAKKRIYVTALYWQKDEAGQEILDEIYRVKQEHLDVKVLIDWHRAQEKSATNADWYCEQRQTYQLPDDPNF-----FGVPINTREVFGVLHVKGFVFDDTVLYSGA-SINNVYLH-QFEKYRYDRYQKITHAELADSVNFINDYLLDFSAVYPLDVTNRPRTK-----------EIRGNIRAYRKDLAQNG------EYSLKSAVKLPNVLSVSPLF--GLGASGNELNQVIEDLFLQVQKKLVICTPYFNFPRTLQHKIATLLENGKRVEIIVGDKVANDPYLYESNLRRFCEKFETQILVVRLWR----------------DGDNTYHLKGVWVDDRYILLTGNNLNPRAWRLDAENGLLIYDQQLLAQVEKEQNQIRQH-TKVLK------------HYTELEELNQYPE--PVQKLLKKFARI-KADKLV
2	SPARKS	3hsia	0.157	0.905	5.648	threading_2	TKRAEQNLNNLPFLALQAEQIEFLGSSAEFKTQIIELIRNAKKRIYVTALYWQKDEAGQEILDEIYRVKQEHLDVKVLIDWHRQRNLLATNADWYCEQ---RQTYQLPDDPNF--FGVPINTREVFGVLHVKGFVFDD-TVLYSGASINNVYLHQFE-KYRYDRYQKITHAELADSVNFIND-----------YLLDFSAVYPLDVTNRPRTKEIRGNIRAYRKDLAQNGEYSLKSAVKLPNVLSVSPLFG--------LGASGNELNQVIEDLFLQVQKKLVICTPYFNFPRTLQHKIATLLENGKRVEIIVGDKVANDQPFKAGALPYLYESNLRRFCE----KFETQIESGQLVVRLWRDGDNTYHLKGVWVDDRYILLTGNNLNPRAWRLDAENGLLIYDPQ--QQLLAQVEKEQNQIQHTKVLKHYTELEELNQYPE------------PVQKLLKKFAR-IKADKLV
3	PROSPECT2	3hsiA	0.169	0.875	3.831	threading_3	TKRAEQNLNNLPFLALQAEQIEFLGSSAEFKTQIIELIRNAKKRIYVTALYWQKDEAGQEILDEIYRVKQEHLDVKVLIDWHRARNLLATNADWYCEQRQTYQLPDDP-----NFFGVPINTREVFGVLHVKGFVFDDTVLY-SGASINNVYLHQFE-KYRYDRYQKITHAELADSVNFINDYLLDFSAVYPLDVTNRPRTKEIRGNI-------RAYRKDLAQNGEYSLKSAVKLPNVL------SVSPLFGLGASGN------ELNQVIEDLFLQVQKKLVICTPYFNFPRTLQHKIATLLENGKRVEIIVGDKVANDPYLYESNLRRFCEKFETQVVRLWRD------------------GDNTYHLKGVWVDDRYILLTGNNLNPRAWRLDAENGLLIYQQQLLAQVEKEQNQIR-QHTKVLKHYTELEEL--------------NQYPEPVQKLLKKFARIKKLVKIL
4	PPA-I	3hsiB	0.154	0.877	3.120	threading_4	TKRAEQNLNNLPFLALQAEQIEFLGSSAEFKTQIIELIRNAKKRIYVTALYWQKDEAGQEILDEIYRVKQEHLDVKVLIDWHNLAEKSATNADWYCEQRQTY-----QLPDDPNFFGVPINTREVFGVLHVKGFVFDDTVLYSGA-SINNVYLHQFE-KYRYDRYQKITHAELADSVNFINDYLLDFSAVYPLDVTN-----------RPRTKEIRGNIRAYRKDLAQNGEYSLKSAVKLPNVLSVSPLFGLGASGN--------ELNQVIEDLFLQVQKKLVICTPYFNFPRTLQHKIATLLENGKRVEIIVGDKVANDESNLRRFCEKFETQIESGQLVVRLWR----------------DGDNTYHLKGVWVDDRYILLTGNNLNPRAWRLDAENGLLIYDPQLLAQVEKEQNQIRQH----------------TKVLKHYTELEELNQYPEPVQKLLKKFARIKADKLV
5	HHPRED-l	1v0w_A	0.153	0.871	7.965	threading_5	SPGLEDGSAADPPGCWGDDKCADRVGTKRLLAKMTENIGNATRTVDISTLAPPNGAFQDAIVAGLKESAAKGLKVRILVGAAP--HMNSKYRDELTAKLITLNVASMT------------TSKTAFSWNHSKILVVDGQSALTGGINSWKDDYLDTT-HPVSDVDLALTGPAAGSAGRYLDTLWTWTCQNKSNIASVWFAASGMPTMHKDTNPKASPATGNVGVGIKDVDPKSTFRPDLPTASDTKCVVGLHDNTNADRDYDTVNPEESALRALVASAKGHIEISPPLPRYDIRLYDALAAKMAAGVKVRIVVSDPANRG-------YSQIKEISDTLRNRLANITGGQATFRSSPNGKWADGHPYAQHHKLVSVDSSTFYIGSKNLYPSW---LQDFGYIVESPEAAKQLDAKLLDPQWKYSQETATVDYARICNA------------------------------------
6	HHPRED-g	1v0w_A	0.161	0.854	7.930	threading_6	ATPLDAVEQTLRQVSPGLWGCADRVGTKRLLAKMTENIGNATRTVDISTLAPPNGAFQDAIVAGLKESAAKGLKVRILVGAAP--HMNVITAKGKAAENITLNVASMTTS------------KTAFSWNHSKILVVDGQSALTGGINSWKDDYLDTT-HPVSDVDLALTGPAAGSAGRYLDTLWTWTCQNKSNIASVWNAGCMPTMHKDTNPKASP-ATGNVP-VIAVGGLGVGIKDVDPKSTFRPDLPTASDTKCVGLDYDTVNPEESALRALVASAKGHIEISPPLPRYDIRLYDALAAKMAAGVKVRIVVSDPANRG-------YSQIKSLSEISDNRLANITGGQQAARSSPNGKWADGHPYAQHHKLVSVDSSTFYIGSKNLYPSW---LQDFGYIVESPEAAKQLDAKLLDPQWKYSQETGICN-A-----------------------------------------
7	SP3	3hsia	0.155	0.913	6.106	threading_7	TKRAEQNLNNLPFLALQAEQIEFLGSSAEFKTQIIELIRNAKKRIYVTALYWQKDEAGQEILDEIYRVKQEHLDVKVLIDWHRQRNLLATNADWYCEQRQTYQLPDDPNF-----FGVPINTREVFGVLHVKGFVFDDTVLYSGA-SINNVYLHQFE-KYRYDRYQKITHAELAD-SVNFINDYLLDFSAVYPLDVTN----------RPRTKEIRGNIRAYRKDLAQNGEYSLKSAVKLPNVLSVSPLFG--------LGASGNELNQVIEDLFLQVQKKLVICTPYFNFPRTLQHKIATLLENGKRVEIIVGDKVANDFYIPPEQPAGALPYLYESNLRRFCEKFETQIESGQLVVRLWRDGDNTYHLKGVWVDDRYILLTGNNLNPRAWRLDAENGLLIYDPQ--QQLLAQVEKEQNQIQHTKVLKHYTELEELNQYPE------------PVQKLLKKFAR-IKADKLV
8	SAM-T99	3hsiB	0.160	0.899	2.897	threading_8	--RAEQNLNNLPFLALQAEQIEFLGSSAEFKTQIIELIRNAKKRIYVTALYWQKDEAGQEILDEIYRVKQENLDVKVLID----WHRAQRNLAEKSATNADWYCEQRQTYQLPNFFGVPINTREVFGVLHVKGFVFDDTVLYSG-ASINNVYLHQFEKYRY------------DRYQKITHAELADSVNFINDYLLDFSAVYPLDVTNRPRTKEIRGNIRAYRKDLAQNGEYSLKSAVKLPNVLSVSPLFGLGAS--------GNELNQVIEDLFLQVQKKLVICTPYFNFPRTLQHKIATLLENGKRVEIIVGDKVANDFYIPP-------EQPFKAGALPYLYESNLRRFCEKFVVRLWRDGDNTYHLKGVWVDDRYILLTGNNLNPRAWRLDAENGLLIYDPQLLAQVEKEQNQIR-QHTKVLKHYTE-----------EELNQYPEPVQKLLKKFARIKADKLVKIL--
9	MUSTER	2ze9A	0.169	0.877	1.392	threading_9	TPHLDAIERSLRDTSPGLEGNRLDAPTRRLLDKMTRNIADARHTVDISSLAFPNGGFEDAVVDGLKASVAAGPRVRILVGAAPIYHLNRYRDELIGKLGAAAGKV------TLNVASMTTSKTSLS-WNASKLLVVDGKTAITGGINGKDDYLDTAH--PVSDVDMALSGPAARSAGKYLDTLWDWTCRNKVWLATSNGASCMPSMEQDEAGSAPAEPTGDIAVGGLGVGIKESDPSSGYHPDLPTAKCTVGLHDNTNADRDTVNPEENALRSLIASARSHVEISQPLPRYDIRTYDTLAGKLAAGVKVRIVVSDPANRGLDEISDTLRTRLVALTGDNLQLASFRSSDAAK-------WADGKPYALHHKLVSVDDSAFYIGSKNLYPAW--LQ-DFGYIVESPAAAQQLKTELLDPEWKYSQQAAATPAGCP---------------------------------------
10	SPARKS	1f0ia	0.143	0.903	3.013	threading_10	LDAVEQTLRQVSPGLEGDSGNKLDGSTKRLLAKMTENIGNATRTVDISTLAPFPNAFQDAIVAGLKESAAKGLKVRILVAAPHMNGIPSKYRDKLTAKLGKAAENITLNVAMTTSKTAFSW-------NHSKILVVDGQSALTGGINSWKDDY-LDTTHPVSDVDLALTGPAAGSAGRYLDTLWTWTCSNIASVWFAASGNAGCMPTMHKDTNPKASPATGNVPVIAVGGLGVGIKDVDPKSTFSDTKCVVGLHDNTNADRDYDNPEESALRALVASAKGHIEISPPLPRYDIRLYDALAAKMAAGVKVRIVVSDPANRGYSQIKSEISDTLRNRLANGQQAAKTAMCSNTFRSSPNGKWADGHPYAQHHKLVSVDSSTFYIGSKNLYP--SWLQ-DFGYIVESPEAAKQLDAKLLDPQWKYSQETATVDYARGICGA-----------------------------------

Predicted Tertiary Structure


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TM-score=0.607 to 1xdpA SCOP code=a.7.15.1	TM-score=0.615 to 1xdpA SCOP code=a.7.15.1	TM-score=0.620 to 1xdpA SCOP code=a.7.15.1	TM-score=0.614 to 1xdpA SCOP code=a.7.15.1	TM-score=0.612 to 1xdpA SCOP code=a.7.15.1