Template-based Modeling Results for YMDB_ECOLI

Submitted Primary Sequence

>Length 177
MKTRIHVVQGDITKLAVDVIVNAANPSLMGGGGVDGAIHRAAGPALLDACLKVRQQQGDCPTGHAVITLAGDLPAKAVVHTVGPVWRGGEQNEDQLLQDAYLNSLRLVAANSYTSVAFPAISTGVYGYPRAAAAEIAVKTVSEFITRHALPEQVYFVCYDEENAHLYERLLTQQGDE
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170

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Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MKTRIHVVQGDITKLAVDVIVNAANPSLMGGGGVDGAIHRAAGPALLDACLKVRQQQGDCPTGHAVITLAGDLPAKAVVHTVGPVWRGGEQNEDQLLQDAYLNSLRLVAANSYTSVAFPAISTGVYGYPRAAAAEIAVKTVSEFITRHALPEQVYFVCYDEENAHLYERLLTQQGDE
CCCEEEEEECCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MKTRIHVVQGDITKLAVDVIVNAANPSLMGGGGVDGAIHRAAGPALLDACLKVRQQQGDCPTGHAVITLAGDLPAKAVVHTVGPVWRGGEQNEDQLLQDAYLNSLRLVAANSYTSVAFPAISTGVYGYPRAAAAEIAVKTVSEFITRHALPEQVYFVCYDEENAHLYERLLTQQGDE
554201002010131201000000122022110000000310022013101301342230310200002012120200000001113223331120011001100210232201000000000112102221002000200120034232221000000233002002310233245
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MKTRIHVVQGDITKLAVDVIVNAANPSLMGGGGVDGAIHRAAGPALLDACLKVRQQQGDCPTGHAVITLAGDLPAKAVVHTVGPVWRGGEQNEDQLLQDAYLNSLRLVAANSYTSVAFPAISTGVYGYPRAAAAEIAVKTVSEFITRHALPEQVYFVCYDEENAHLYERLLTQQGDE
1	MUSTER	1spvA	1.000	0.966	3.707	threading_1	--TRIHVVQGDITKLAVDVIVNAANPSL-GGGGVDGAIHRAAGPALLDACLKVRQQQGDCPTGHAVITLAGDLPAKAVVHTVGPVWRGGEQNEDQLLQDAYLNSLRLVAANSYTSVAFPAISTGVYGYPRAAAAEIAVKTVSEFITRHALPEQVYFVCYDEENAHLYERLLTQQ---
2	SPARKS	3q6za	0.349	0.989	4.357	threading_2	PGVVLIVQQGDLARLPVDVVVNASNEDLKHYGGLAAALSKAAGPELQADCDQIVKREGRLLPGNATISKAGKLPYHHVIHAVGPRWSGYEAPCVYLLRRAVQLSLCLAEKYKYRSIAIPAISSGVFGFPLGRCVETIVSAIKENFQFKKHLKEIYLVDVSEKTVEAFAEAVKTVF--
3	PROSPECT2	3q6zA	0.349	0.989	4.120	threading_3	PGVVLIVQQGDLARLPVDVVVNASNEDLKHYGGLAAALSKAAGPELQADCDQIVKREGRLLPGNATISKAGKLPYHHVIHAVGPRWSGYEAPRVYLLRRAVQLSLCLAEKYKYRSIAIPAISSGVFGFPLGRCVETIVSAIKENFQFKKCLKEIYLVDVSEKTVEAFAEAVKTV--F
4	PPA-I	1spvA	1.000	0.966	3.709	threading_4	--TRIHVVQGDITKLAVDVIVNAANPSL-GGGGVDGAIHRAAGPALLDACLKVRQQQGDCPTGHAVITLAGDLPAKAVVHTVGPVWRGGEQNEDQLLQDAYLNSLRLVAANSYTSVAFPAISTGVYGYPRAAAAEIAVKTVSEFITRHALPEQVYFVCYDEENAHLYERLLTQQ---
5	HHPRED-l	1spv_A	1.000	0.966	4.146	threading_5	--TRIHVVQGDITKLAVDVIVNAANPSL-GGGGVDGAIHRAAGPALLDACLKVRQQQGDCPTGHAVITLAGDLPAKAVVHTVGPVWRGGEQNEDQLLQDAYLNSLRLVAANSYTSVAFPAISTGVYGYPRAAAAEIAVKTVSEFITRHALPEQVYFVCYDEENAHLYERLLTQQ---
6	HHPRED-g	2x47_A	0.462	0.977	3.546	threading_6	LNEKISLLRSDITKLEVDAIVNAANSSLLGGGGVDGCIHRAAGPLLTDECRTL----QSCKTGKAKITGGYRLPAKYVIHTVGPIAYGESASQAAELRSCYLSSLDLLLEHRLRSVAFPCISTGVFGYPCEAAAEIVLATLREWLEQHKDVDRLIICVFLEKDEDIYRSRLPHYFPV
7	SP3	3q6za	0.349	0.989	4.542	threading_7	PGVVLIVQQGDLARLPVDVVVNASNEDLKHYGGLAAALSKAAGPELQADCDQIVKREGRLLPGNATISKAGKLPYHHVIHAVGPRWSGYEAPCVYLLRRAVQLSLCLAEKYKYRSIAIPAISSGVFGFPLGRCVETIVSAIKENFQFKKCLKEIYLVDVSEKTVEAFAEAVKTVF--
8	SAM-T99	1spvA	0.994	0.966	5.023	threading_8	--TRIHVVQGDITKLAVDVIVNAANPS-LGGGGVDGAIHRAAGPALLDACLKVRQQQGDCPTGHAVITLAGDLPAKAVVHTVGPVWRGGEQNEDQLLQDAYLNSLRLVAANSYTSVAFPAISTGVYGYPRAAAAEIAVKTVSEFITRHALPEQVYFVCYDEENAHLYERLLTQQ---
9	MUSTER	3q6zA	0.349	0.989	3.568	threading_9	PGVVLIVQQGDLARLPVDVVVNASNEDLKHYGGLAAALSKAAGPELQADCDQIVKREGRLLPGNATISKAGKLPYHHVIHAVGPRWSGYEAPCVYLLRRAVQLSLCLAEKYKYRSIAIPAISSGVFGFPLGRCVETIVSAIKENFQFKKCLKEIYLVDVSEKTVEAFAEAVKTVF--
10	SPARKS	3q71a	0.251	0.989	4.141	threading_10	GGLQMLLVKEGVQNAKTDVVVNSVPLDLLSRGPLSKSLLEKAGPELQEELDTVGQ-GVAVSMGTVLKTSSWNLDCRYVLHVVAPEWRNGSTSSLKIMEDIIRECMEITESLSLKSIAFPAIGTGNLGFPKNIFAELIISEVFKFSSKNKTLQEVHFLLHDHENIQAFSDEFARRAN-

Predicted Tertiary Structure


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TM-score=0.982 to 1spvA TM-score=0.999 to native SCOP code=c.50.1.2	TM-score=0.922 to 1spvA TM-score=0.937 to native SCOP code=c.50.1.2	TM-score=0.919 to 1spvA TM-score=0.934 to native SCOP code=c.50.1.2	TM-score=0.919 to 1spvA TM-score=0.934 to native SCOP code=c.50.1.2	TM-score=0.982 to 1spvA TM-score=0.999 to native SCOP code=c.50.1.2

Experimental Structure

Download 1spvA

SCOP code=c.50.1.2