Template-based Modeling Results for YMBA_ECOLI


  Submitted Primary Sequence

>Length 187
MKKWLVTIAALWLAGCSSGEINKNYYQLPVVQSGTQSTASQGNRLLWVEQVTVPDYLAGNGVVYQTSDVKYVIANNNLWASPLDQQLRNTLVANLSTQLPGWVVASQPLGSAQDTLNVTVTEFNGRYDGKVIVSGEWLLNHQGQLIKRPFRLEGVQTQDGYDEMVKVLAGVWSQEAASIAQEIKRLP
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180
Download Primary Sequence

  Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MKKWLVTIAALWLAGCSSGEINKNYYQLPVVQSGTQSTASQGNRLLWVEQVTVPDYLAGNGVVYQTSDVKYVIANNNLWASPLDQQLRNTLVANLSTQLPGWVVASQPLGSAQDTLNVTVTEFNGRYDGKVIVSGEWLLNHQGQLIKRPFRLEGVQTQDGYDEMVKVLAGVWSQEAASIAQEIKRLP
CHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCCCCEEEECCCCHHHCCCCCEEEEECCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCEEEEEEEEEEEEECCCEEEEEEEEEEECCCCEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180
Download Predicted 3-state Secondary Structure Types

  Predicted Solvent Accessibility

>0-buried to 9-exposed
MKKWLVTIAALWLAGCSSGEINKNYYQLPVVQSGTQSTASQGNRLLWVEQVTVPDYLAGNGVVYQTSDVKYVIANNNLWASPLDQQLRNTLVANLSTQLPGWVVASQPLGSAQDTLNVTVTEFNGRYDGKVIVSGEWLLNHQGQLIKRPFRLEGVQTQDGYDEMVKVLAGVWSQEAASIAQEIKRLP
4110000000000010112323210010122322232222312210101202023101231000111322000022111022022102200021023213111011222222211010101102022302000101000134331121102020222432132003001100220022003214513
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180
Download Predicted Solvent Accessibility

  Top 10 Templates

RankMethodTemplateIdentityCoverageN-ZscoreThreading AlignmentMKKWLVTIAALWLAGCSSGEINKNYYQLPVVQSGTQSTASQGNRLLWVEQVTVPDYLAGNGVVYQTSDVKYVIANNNLWASPLDQQLRNTLVANLSTQLPGWVVASQPLGSAQDTLNVTVTEFNGRYDGKVIVSGEWLLNHQGQLIKRPFRLEGVQTQDGYDEMVKVLAGVWSQEAASIAQEIKRLP
1MUSTER2iqiF0.1300.8662.171threading_1----------------------ATIYAPTVRV-TPNPAWPQVSWQLLVAKPSAARIIDSPRINVRPTPGELQVYHGAGWAQPATDMLEDSVVRAFEDSGKIAAVAR--IIRSDYKLAIDVRRFESDYAPAATIELNAKLLHSSDVASRTFTVARPSSSTDTAAVAAAFEQALTQVTTELVGWTLITG
2SPARKS2iqia0.1380.8562.309threading_2-----------------------ATIYAPTVRVTPNPAWPQVSWQLLVAKPSAARIIDSPRINVRPTPGELQVYHGAGWAQPATDMLEDSVVRAFEDSGKIAAVARI----SDYKLAIDVRRFESDYAGAATIELNAKLLHSSDVASRTFTVARPSSSTDTAAVAAAFEQALTQVTTELVGWTLITG
3PROSPECT22iqiA0.1380.8562.701threading_3----------------------ATIYAPTVRVTP-NPAWPQVSWQLLVAKPSAARIIDSPRINVRPTPGELQVYHGAGWAQPATDMLEDSVVRAFEDSGKIAAVA----RISDYKLAIDVRRFESDYAGAATIELNAKLLHSSDVASRTFTVARPSSSTDTAAVAAAFEQALTQVTTELVGWTLITT
4PPA-I2iqiF0.1360.8663.435threading_4----------------------ATIYAPTVRV-TPNPAWPQVSWQLLVAKPSAARIIDSPRINVRPTPGELQVYHGAGWAQPATDMLEDSVVRAFEDSGKIAAVAR--IIRSDYKLAIDVRRFESDYAGAATIELNAKLLHSSDVASRTFTVARPSSSTDTAAVAAAFEQALTQVTTELVGWTLITG
5HHPRED-l2iqi_A0.1380.8507.100threading_5----------------------ATIYAPTVRVTPNPA-WPQVSWQLLVAKPSAARIIDSPRINVRPTPGELQVYHGAGWAQPATDMLEDSVVRAFEDSGKIAAVARI----SDYKLAIDVRRFESDYAGAATIELNAKLLHSQVVASRTFTVARPSSSTDTAAVAAAFEQALTQVTTELVGWTLIT-
6HHPRED-g2iqi_A0.1450.8507.585threading_6----------------------ATIYAPTVRVTPNP-AWPQVSWQLLVAKPSAARIIDSPRINVRPTPGELQVYHGAGWAQPATDMLEDSVVRAFEDSGKIAAVARI----SDYKLAIDVRRFESDYAGAATIELNAKLLHQRVVASRTFTVARPSSSTDTAAVAAAFEQALTQVTTELVGWTLIT-
7SP32iqia0.1440.8561.249threading_7----------------------ATIY-APTVRVTPNPAWPQVSWQLLVAKPSAARIIDSPRINVRPTPGELQVYHGAGWAQPATDMLEDSVVRAFEDSGKIAAVARI----SDYKLAIDVRRFESDYAGAATIELNAKLLHSSDVASRTFTVARPSSSTDTAAVAAAFEQALTQVTTELVGWTLITG
8SAM-T992iqiF0.1330.8451.633threading_8----------------------ATIYAPTVRVTPNPAWPQ-VSWQLLVAKPSAARIIDSPRINVRPTPGELQVYHGAGWAQPATDMLEDSVVRAFEDSGKIAAVARIIRS---YKLAIDVRRFESDYAGQATIELNAKLLHSSDVASRTFTVARPSSSTDTAAVAAAFEQALTQVTTELVGWTL---
9MUSTER2qytA10.1020.8880.655threading_9IK-IAVFGVGGYYGA-----------LA-----LRAAATDGLLEVSWIARGAHLEAIRAAGGLRVVTPSRDFLARPTCVTDNPAEVYDERGVAEIRPIGQNTKILPLLNGADIAERR---TYLPDTVVWKGCVYISARKSAPGLADRELFYFGSGLPEQTEVRLAELLTAAIRYNPTDIDWYIKKF-
10SPARKS1yzfa0.1480.9410.594threading_10MRKIVLFGDSITA-GYLDEAVSPVLVDLVKRDIAAMGLEEVAVINAGMPGDTTEDGLKRNKEVLIEKPDEVVIFDASLDRNITVATFRENLETMIHEIGSEKVILYADSGRRPERPQTRIKELVKVAQEVG--------AAHNLPVIDLYKAMT--VYPGTDEFLQASQVGYELLGALIVREIKGRP

  Predicted Tertiary Structure

Download Model 1 Download Model 2 Download Model 3 Download Model 4 Download Model 5
TM-score=0.880 to 2iqiF
SCOP code=c.51.6.2
TM-score=0.885 to 2iqiF
SCOP code=c.51.6.2
TM-score=0.875 to 2iqiF
SCOP code=c.51.6.2
TM-score=0.871 to 2iqiF
SCOP code=c.51.6.2
TM-score=0.878 to 2iqiF
SCOP code=c.51.6.2