Template-based Modeling Results for YLII_ECOLI

Submitted Primary Sequence

>Length 371
MHRQSFFLVPLICLSSALWAAPATVNVEVLQDKLDHPWALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPDDNPFIKESGARAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGEIVAGTEQPVFYWKDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLTDESSGELLKVSPRN
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MHRQSFFLVPLICLSSALWAAPATVNVEVLQDKLDHPWALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPDDNPFIKESGARAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGEIVAGTEQPVFYWKDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLTDESSGELLKVSPRN
CCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCEEECCCCCEEEEEECCCCCCCCEEEEEEECCCCCCCCEEEEEEEEECCCCCCCCCEEEEEEECCCCCCCCCCCCEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCCEEEECCCCCCEEEEEECCCCCCEEEEECCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCEECCCCCCHHHCCCEEEEECCCCEEEEEEECCCCEEEEEEECCCCCCCEEEEEECCCCEEEEEEECCCCEEEEEEECC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MHRQSFFLVPLICLSSALWAAPATVNVEVLQDKLDHPWALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPDDNPFIKESGARAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGEIVAGTEQPVFYWKDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLTDESSGELLKVSPRN
42110000000000000111122202010002403100000002322000002220201102124222210111221101121000000001212322100000022234242000000011233224122121002111322211110010001130100000021122222332332302001012313013211113322120100010021010000022221000000024111100002413111000011112122231232313212213200011221101000001212211312320000013321000010224311221201334221010021022010000112230100101236
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MHRQSFFLVPLICLSSALWAAPATVNVEVLQDKLDHPWALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPDDNPFIKESGARAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGEIVAGTEQPVFYWKDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLTDESSGELLKVSPRN
1	MUSTER	2g8sA	0.977	0.922	3.062	threading_1	----------------------ATVNVEVLQDKLDHPWALAFLPDNH-GLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQ-PKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPDDNPFIKESGVRAEIWSYGIRNPQGA--NPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGEIVAGTEQPVFYWKDSPAVSGA-FYNSDKFPQWQQKLFIGALKDK-DVIVSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLTDESSGELLKVSPR-
2	SPARKS	3a9ga	0.321	0.881	6.659	threading_2	---------------------EWKFKISEVASDLEVPWSIAPLGGG-RYLVTERPGRLVLISPSG---KKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIP--GAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFPN-----SPIWSYGHRNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEF------------VDPVIDTGSETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMVRKISTFFKNVFGRLRDVVIDDDGGILISTSNRDGRILKIVSEQ
3	PROSPECT2	3a9gA	0.315	0.881	4.559	threading_3	---------------------EWKFKISEVASDLEVPWSIAPLGGG-RYLVTERPGRLVLISPSG---KKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIP--GAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFPN-----SPIWSYGHRNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGE------------FVDPVIDTGSETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNEVRKISTFFKNVFGRLRDVVIDDDGGILISTSNRDDKILKIVSEQ
4	PPA-I	2g8sA	0.980	0.922	3.235	threading_4	----------------------ATVNVEVLQDKLDHPWALAFLPDNH-GLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQ-PKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPDDNPFIKESGVRAEIWSYGIRNPQGA--NPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGEIVAGTEQPVFYWKDSPAVSGA-FYNSDKFPQWQQKLFIGALKDKDVIVSVN-GDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLTDESSGELLKVSPR-
5	HHPRED-l	3a9g_A	0.317	0.876	3.690	threading_5	---------------------EWKFKISEVASDLEVPWSIAPLGGGRYLVTE-RPGRLVLIS-PSGK-KLVASFD-VANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIP--GAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPF-----PNSPIWSYGHRNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAG-------------RGEFVDPVIDTSETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMVRKISTFFKNVFGRLRDVVIDDDGGILISTSNRDGKILKIVSE-
6	HHPRED-g	2wg3_C	0.176	0.827	5.307	threading_6	----------------------NCFCIQEVVSGLRQPVGALHSGDGSRLFILEKEGYVKILTPEGEFKEPYLDIHKLVQSGERGLLSLAFHPNYKKNGKLYVSYTTNQERHDHILRVVEYTVSRKNPDLRTARVFLEVAEL--HRKHLGGQLLFGPDGFLYIILGDGMIMEEMDGLSDFTGSVLRLDVDTSIPRSNPHFNSTNQPPEVFAHGLHDPGRCAVDRHPTDILCSDS----SARILQII----YESE-------------------------PSLLEFKP--PLVGGFVYRGCQSERLYGSYVFGDRN-GNFLTLQQ----WQEKPLCLGYFSGHILGFGEDELGEVYILSSSHNGKLYKIVPKR
7	SP3	3a9ga	0.321	0.881	6.678	threading_7	---------------------EWKFKISEVASDLEVPWSIAPLGGG-RYLVTERPGRLVLISPSG---KKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIP--GAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFPN-----SPIWSYGHRNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEF------------VDPVIDTGSETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTSNRDGRILKIVSEQ
8	SAM-T99	2g8sA	0.982	0.922	5.602	threading_8	----------------------ATVNVEVLQDKLDHPWALAFLPDNH-GLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQPK-LSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPDDNPFIKESGVRAEIWSYGIRNPQGA--NPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGEIVAGTEQPVFYWKDSPAVSG-AFYNSDKFPQWQQKLFIGALKDKDVI-VSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLTDESSGELLKVSPR-
9	MUSTER	3a9gA	0.325	0.879	2.795	threading_9	---------------------EWKFKISEVASDLEVPWSIAPLGGG-RYLVTERPGRLVLISPS---GKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIP--GAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFPN-----SPIWSYGHRNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGE-------------FVDPVIDTGETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNEVRKISTFFKNVFGRLRDVVIDDDGGILISTSNRDGKILKIVSEQ
10	SPARKS	2g8sa	0.982	0.922	6.487	threading_10	----------------------ATVNVEVLQDKLDHPWALAFLPDNH-GLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFR-QPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPDDNPFIKESGVRAEIWSYGIRNPQGA--NPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGEIVAGTEQPVFYWKDSPAVSG-AFYNSDKFPQWQQKLFIGALKDKDV-IVSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLTDESSGELLKVSPR-

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.781 to 1cruB TM-score=0.998 to native SCOP code=b.68.2.1	TM-score=0.781 to 1cruB TM-score=0.998 to native SCOP code=b.68.2.1	TM-score=0.758 to 1cruB TM-score=0.895 to native SCOP code=b.68.2.1	TM-score=0.758 to 1cruB TM-score=0.898 to native SCOP code=b.68.2.1	TM-score=0.778 to 1cruB TM-score=0.998 to native SCOP code=b.68.2.1

Experimental Structure

Download 2g8sA

SCOP code=b.68.2.1