Template-based Modeling Results for YLBA_ECOLI

Submitted Primary Sequence

>Length 261
MGYLNNVTGYREDLLANRAIVKHGNFALLTPDGLVKNIIPGFENCDATILSTPKLGASFVDYLVTLHQNGGNQQGFGGEGIETFLYVISGNITAKAEGKTFALSEGGYLYCPPGSLMTFVNAQAEDSQIFLYKRRYVPVEGYAPWLVSGNASELERIHYEGMDDVILLDFLPKELGFDMNMHILSFAPGASHGYIETHVQEHGAYILSGQGVYNLDNNWIPVKKGDYIFMGAYSLQAGYGVGRGEAFSYIYSKDCNRDVEI
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MGYLNNVTGYREDLLANRAIVKHGNFALLTPDGLVKNIIPGFENCDATILSTPKLGASFVDYLVTLHQNGGNQQGFGGEGIETFLYVISGNITAKAEGKTFALSEGGYLYCPPGSLMTFVNAQAEDSQIFLYKRRYVPVEGYAPWLVSGNASELERIHYEGMDDVILLDFLPKELGFDMNMHILSFAPGASHGYIETHVQEHGAYILSGQGVYNLDNNWIPVKKGDYIFMGAYSLQAGYGVGRGEAFSYIYSKDCNRDVEI
CCCCCCCCCCHHHCCCCCEEEECCCEEEECCCCEEEECCCCCCCCEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCCEEEEEEEEEEEEEEEECCEEEEECCCCEEEECCCCCEEEEECCCCCEEEEEEEEECCCCCCCCCCCEECCHHCCCCCCCCCCCCEEEEECCCCCCCCEEEEEEEEECCCCEECCCEECCCCCEEEEECCEEEEEECCCEEECCCCCEEEECCCCCHHEECCCCCCCEEEEEECCCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MGYLNNVTGYREDLLANRAIVKHGNFALLTPDGLVKNIIPGFENCDATILSTPKLGASFVDYLVTLHQNGGNQQGFGGEGIETFLYVISGNITAKAEGKTFALSEGGYLYCPPGSLMTFVNAQAEDSQIFLYKRRYVPVEGYAPWLVSGNASELERIHYEGMDDVILLDFLPKELGFDMNMHILSFAPGASHGYIETHVQEHGAYILSGQGVYNLDNNWIPVKKGDYIFMGAYSLQAGYGVGRGEAFSYIYSKDCNRDVEI
532223221123201221000221200001230001010211330100000124221200000000243222331202321110000020102020332201024210000111120100123232010000222022132221210011122132131321310001101143110000000000111101111100121100000201000002321020331000000010120011114221000000211243244
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MGYLNNVTGYREDLLANRAIVKHGNFALLTPDGLVKNIIPGFENCDATILSTPKLGASFVDYLVTLHQNGGNQQGFGGEGIETFLYVISGNITAKAEGKTFALSEGGYLYCPPGSLMTFVNAQAEDSQIFLYKRRYVPVEGYAPWLVSGNASELERIHYEGMDDVILLDFLPKELGFDMNMHILSFAPGASHGYIETHVQEHGAYILSGQGVYNLDNNWIPVKKGDYIFMGAYSLQAGYGVGRGEAFSYIYSKDCNRDVEI
1	MUSTER	1sefA	0.564	0.958	3.333	threading_1	-----------KELLTSRAVIKKDNYAIIPHDGLVQNAVPGFENVDISILGSPKLGATFVDYIATFHKNGQQTTGFGGDGIQTLVYVIDGRLRVSDGQETHELEAGGYAYFTPEMKMYLANAQEADTEVFLYKKRYQPLAGHQPYKVVGSIHDQQPEEYEGMTDVLLWSLLPKEFDFDMNMHILSFEPGASHAYIETHVQEHGAYLISGQGMYNLDNEWYPVEKGDYIFMSAYVPQAAYAVGREEPLMYVYSKDANREPEL
2	SPARKS	1rc6a	0.992	0.927	6.849	threading_2	--------GYREDLLANRAIVKHGNFALLTPDGLVKNIIPGFENCDATILSTPKLGASFVDYLVTLHQNGGNQQGFGGEGIETFLYVISGNITAKAEGKTFALSEGGYLYCPPGSLMTFVNAQAEDSQIFLYKRRYVPVEGYAPWLVSGNASELERIV-------ILLDFLPKELGFDMNMHILSFAPGASHGYIETHVQEHGAYILSGQGVYNLDNNWIPVKKGDYIFMGAYSLQAGYGVA----FSYIYSKDCNRDVEI
3	PROSPECT2	1sefA	0.564	0.958	3.703	threading_3	-----------KELLTSRAVIKKDNYAIIPHDGLVQNAVPGFENVDISILGSPKLGATFVDYIATFHKNGQQTTGFGGDGIQTLVYVIDGRLRVSDGQETHELEAGGYAYFTPEMKMYLANAQEADTEVFLYKKRYQPLAGHQPYKVVGSIHDQQPEEYEGMTDVLLWSLLPKEFDFDMNMHILSFEPGASHAYIETHVQEHGAYLISGQGMYNLDNEWYPVEKGDYIFMSAYVPQAAYAVGREEPLMYVYSKDANREPEL
4	PPA-I	1sefA	0.564	0.958	6.678	threading_4	-----------KELLTSRAVIKKDNYAIIPHDGLVQNAVPGFENVDISILGSPKLGATFVDYIATFHKNGQQTTGFGGDGIQTLVYVIDGRLRVSDGQETHELEAGGYAYFTPEMKMYLANAQEADTEVFLYKKRYQPLAGHQPYKVVGSIHDQQPEEYEGMTDVLLWSLLPKEFDFDMNMHILSFEPGASHAYIETHVQEHGAYLISGQGMYNLDNEWYPVEKGDYIFMSAYVPQAAYAVGREEPLMYVYSKDANREPEL
5	HHPRED-l	1sef_A	0.566	0.954	5.200	threading_5	-----------KELLTSRAVIKKDNYAIIPHDGLVQNAVPGFENVDISILGSPKLGATFVDYIATFHKNGQQTTGFGGDGIQTLVYVIDGRLRVSDGQETHELEAGGYAYFTPEMKMYLANAQEADTEVFLYKKRYQPLAGHQPYKVVGSIHDQQPEEYEGMTDVLLWSLLPKEFDFDMNMHILSFEPGASHAYIETHVQEHGAYLISGQGMYNLDNEWYPVEKGDYIFMSAYVPQAAYAVGREEPLMYVYSKDANREPE-
6	HHPRED-g	1sef_A	0.564	0.958	5.175	threading_6	-----------KELLTSRAVIKKDNYAIIPHDGLVQNAVPGFENVDISILGSPKLGATFVDYIATFHKNGQQTTGFGGDGIQTLVYVIDGRLRVSDGQETHELEAGGYAYFTPEMKMYLANAQEADTEVFLYKKRYQPLAGHQPYKVVGSIHDQQPEEYEGMTDVLLWSLLPKEFDFDMNMHILSFEPGASHAYIETHVQEHGAYLISGQGMYNLDNEWYPVEKGDYIFMSAYVPQAAYAVGREEPLMYVYSKDANREPEL
7	SP3	1rc6a	0.996	0.927	6.711	threading_7	--------GYREDLLANRAIVKHGNFALLTPDGLVKNIIPGFENCDATILSTPKLGASFVDYLVTLHQNGGNQQGFGGEGIETFLYVISGNITAKAEGKTFALSEGGYLYCPPGSLMTFVNAQAEDSQIFLYKRRYVPVEGYAPWLVSGNASELERI-------VILLDFLPKELGFDMNMHILSFAPGASHGYIETHVQEHGAYILSGQGVYNLDNNWIPVKKGDYIFMGAYSLQAGYGVA----FSYIYSKDCNRDVEI
8	SAM-T99	1sefA	0.564	0.958	5.872	threading_8	-----------KELLTSRAVIKKDNYAIIPHDGLVQNAVPGFENVDISILGSPKLGATFVDYIATFHKNGQQTTGFGGDGIQTLVYVIDGRLRVSDGQETHELEAGGYAYFTPEMKMYLANAQEADTEVFLYKKRYQPLAGHQPYKVVGSIHDQQPEEYEGMTDVLLWSLLPKEFDFDMNMHILSFEPGASHAYIETHVQEHGAYLISGQGMYNLDNEWYPVEKGDYIFMSAYVPQAAYAVGREEPLMYVYSKDANREPEL
9	MUSTER	1rc6A	0.992	0.927	3.267	threading_9	--------GYREDLLANRAIVKHGNFALLTPDGLVKNIIPGFENCDATILSTPKLGASFVDYLVTLHQNGGNQQGFGGEGIETFLYVISGNITAKAEGKTFALSEGGYLYCPPGSLMTFVNAQAEDSQIFLYKRRYVPVEGYAPWLVSGNASELERIV-------ILLDFLPKELGFDMNMHILSFAPGASHGYIETHVQEHGAYILSGQGVYNLDNNWIPVKKGDYIFMGAYSLQAGYGVA----FSYIYSKDCNRDVEI
10	SPARKS	1sfna	0.318	0.927	6.415	threading_10	----------MKHLGQTRSALHG-SHAVITPETFVRTALAEWPGSAIVLHIAPVVGARFVQFTAEMPAGAQAT----ESVYQRFAFVLSGEVDVAVGGETRTLREYDYVYLPAGEKHMLTA--KTDARVSVFEKPYQTVEGVAPGVYWGNERENPGYPFEGDDHLIARKLLPDEPAFDFMVSTMSFAPGASLPYAEVHYMEHGLLMLEGEGLYKLEENYYPVTAGDIIWMGAHCPQWYGALGRNW-SKYLLYKDMNRHPL-

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.974 to 1sefA TM-score=0.938 to native SCOP code=b.82.1.11	TM-score=0.974 to 1sefA TM-score=0.938 to native SCOP code=b.82.1.11	TM-score=0.957 to 1rc6A TM-score=0.993 to native SCOP code=b.82.1.11	TM-score=0.974 to 1sefA TM-score=0.938 to native SCOP code=b.82.1.11	TM-score=0.974 to 1sefA TM-score=0.938 to native SCOP code=b.82.1.11

Experimental Structure

Download 1rc6A

SCOP code=b.82.1.11