Template-based Modeling Results for YKGH_ECOLI

Submitted Primary Sequence

>Length 222
MREQIKQDIDLIEILFYLKKKIRVILFIMAICMAMVLLFLYINKDNIKVIYSLKINQTTPGILVSCDSNNNFACQTTMTEDVIQRITTFFHTSPDVKNREIRLEWSGDKRALPTAEEEISRVQASIIKWYASEYHNGRQVLDEIQTPSAINSELYTKMIYLTRNWSLYPNGDGCVTISSPEIKNKYPAAICLALGFFLSIVISVMFCLVKKMVDEYQQNSGQ
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MREQIKQDIDLIEILFYLKKKIRVILFIMAICMAMVLLFLYINKDNIKVIYSLKINQTTPGILVSCDSNNNFACQTTMTEDVIQRITTFFHTSPDVKNREIRLEWSGDKRALPTAEEEISRVQASIIKWYASEYHNGRQVLDEIQTPSAINSELYTKMIYLTRNWSLYPNGDGCVTISSPEIKNKYPAAICLALGFFLSIVISVMFCLVKKMVDEYQQNSGQ
CCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCEEEECCCCCCEEEEHHHHHHHHHHHHEEEECCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCCCCCCCHHHHHHHHHHHCCCEECCCCCCEEEECCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MREQIKQDIDLIEILFYLKKKIRVILFIMAICMAMVLLFLYINKDNIKVIYSLKINQTTPGILVSCDSNNNFACQTTMTEDVIQRITTFFHTSPDVKNREIRLEWSGDKRALPTAEEEISRVQASIIKWYASEYHNGRQVLDEIQTPSAINSELYTKMIYLTRNWSLYPNGDGCVTISSPEIKNKYPAAICLALGFFLSIVISVMFCLVKKMVDEYQQNSGQ
544313331300200010232020010000000000000111233202010102014212000010223110001020023002310100222232422101010122442221033101201110030002112202300232312211122000100101220100121300010112313432211001000101000000000002300221343234
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MREQIKQDIDLIEILFYLKKKIRVILFIMAICMAMVLLFLYINKDNIKVIYSLKINQTTPGILVSCDSNNNFACQTTMTEDVIQRITTFFHTSPDVKNREIRLEWSGDKRALPTAEEEISRVQASIIKWYASEYHNGRQVLDEIQTPSAINSELYTKMIYLTRNWSLYPNGDGCVTISSPEIKNKYPAAICLALGFFLSIVISVMFCLVKKMVDEYQQNSGQ
1	PROSPECT2	1q15A2	0.072	1.000	1.030	threading_1	TASNQLLALPREPLLALIDRYLNAPLEDLAPRDSSLVTALASRHFKKLNTYSIGTELSNETHHQMKIFDGLSAEIQSGLFNVYRQAQGQVSCMLTGYGSDLLFGGILKPGAQYDNPNQLLAEQVYRTRWTGEFATHGASCYGIDIRHPFWSHSLISLCHALHPDYKIFDNEVKNIQLLPKDIVWRSVNQAFANVLGSTVDNYQTKSRFTYRVYQAFLRGRLS
2	HHPRED-g	2wsc_I	0.310	0.131	1.170	threading_2	--------------MINLPS-LFVPLGLLFPAVAMASLFLHVEK----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3	PROSPECT2	1eyea	0.052	0.959	1.001	threading_3	DGGCYLDLDDAVKHGLAMAAAGAGIVDVGGETSRVIPVVKELAAQGITVSIDTAALQNGAQMVNDVSGGRA---DPAMGPLLAEADVPWVLMHWRAVSAD----TPHVPVRYGNVVAEVRADLLASVADAVAAGVDPARLVLDPGLGFAKTAQHNWAILHALPEL--VATGIPVLVGASGALLAGPDGVMRPTDGRDTATAVISALAASVDAIKVVEAMGAE
4	MUSTER	2x19B	0.130	0.937	0.588	threading_4	IAETIVNYSDVVPGLIGLIPRINVQLADTVFTIGALSEWLADHPNSV-LPLVLHALGNPELSVSSVSTLKKICCKYDLAANIVAVSQDVLKQIHKTSQCWL--------QALGFLLSAVEEILKNLHSLISPYIQQLEKLAEEIPNPSNK-LAIVHILGLLSNLFTLDISHHE----PNPVVVQQVFQLIQKVLSKWLAQVVEAVCAIFEKSVKTLLDDFAP
5	SPARKS	1h99a	0.147	0.797	0.488	threading_5	AMEKFKTDIPSEEIISYAKLQLGKKLIYVSLTDHINFAIQRNQKGLIKNALLWETKRLYKD-------------EFAIGKEALVMVKNKTGVSLPED--EAGLHIVNAELNEEMPNIINITKVMEEILSIVKYHFK-------IEFNE--ESLHYYRFVTDLK--FFAFNG---THMEDDTVKEKY----------------HRAYECTKKIQTYIEREYEH
6	PROSPECT2	1gt7a	0.056	0.973	0.999	threading_6	MQNIT--QSWFVQGMIKATTDAWLKLTLRLDDADIAPYHDNFHQQPRYIPLSQPMPLLANTPFIVTGSGKFF----RNVQLDPAANLGIVKVDSDGAGYHILWGLTNEAVPTSELPAHFLSHCERIKATNGKDHCHATNLIALTYVLENDTAVFTRQLWEGSTECLVVFPDGVGILPWMVPGTDEIGQATAQEMQDETFGLIDTAEKSAQVLVKVYSMGGMK
7	PPA-I	1z6oX	0.125	0.829	0.545	threading_7	NPVQIPKDWITRSCRNSMRQQIQMEVGASLQYLAMGAHFSKDVVN-------------RPGF-----AQLFFDAASEEREHAMKLIEYLLMRGELTNDVSSLLQVRPPTRSSWKGGVEALEHALSMESDVTKSIRNVIKACEDDSEFNDYHLVDYLTGDFL-----------------EEQYKG---QRDLAGKASTLKKLMDRHEALGEFIFDKKLLGIDV
8	HHPRED-l	2wsc_I	0.333	0.122	0.963	threading_8	--------------MINLP-SLFVGLL--FPAVAMASLFLHVEK----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9	HHPRED-g	1x46_A	0.087	0.414	0.469	threading_9	-----------------------------------------------------------------------------------------------------------DPTWVDMEAGDIALVKSSWAQ-----------I-------HDKEVDILYNF--FKSYPAKFSAFAG-KDLDTAPFALH-ATRIVSVINEAIALMRPALKNVLKQQGINHK-GRGV
10	SP3	3kfoa	0.198	0.887	0.368	threading_10	---KIQYNLDTIDAEKNISNKLKVQICKRFKNGSIREVFNIL-VEELKSTTVVNLSDLV--ELYSLDDEESLF-IPLRLLSVDGNLLNF-----EVKKFLNALVW---RRILLNASNEGDKLLQHIVKRVFDEKNN------DFPLPSLCDKSLLT-PEYIS---ETYGRFPIDQNAIREEIYEEISQVETLNSDNSLEIKLHSTIGSVKNYTINYETNTVE

Predicted Tertiary Structure


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TM-score=0.706 to 1q19A SCOP code=c.26.2.1	TM-score=0.322 to 1jo5A SCOP code=f.3.1.1	TM-score=0.830 to 1eyeA SCOP code=c.1.21.1	TM-score=0.621 to 2vglB SCOP code=i.23.1.1	TM-score=0.570 to 2ex3B SCOP code=a.263.1.1