Template-based Modeling Results for YKGF_ECOLI

Submitted Primary Sequence

>Length 475
MSIKTSNTDFKTRIRQQIEDPIMRKAVANAQQRIGANRQKMVDELGHWEEWRDRAAQIRDHVLSNLDAYLYQLSEKVTQNGGHVYFARTKEDATRYILQVAQRKNARKVVKSKSMVTEEIGVNHVLQDAGIQVIETDLGEYILQLDQDPPSHVVVPAIHKDRHQIRRVLHERLGYEGPETPEAMTLFIRQKIREDFLSAEIGITGCNFAVAETGSVCLVTNEGNARMCTTLPKTHIAVMGMERIAPTFAEVDVLITMLARSAVGARLTGYNTWLTGPREAGHVDGPEEFHLVIVDNGRSEVLASEFRDVLRCIRCGACMNTCPAYRHIGGHGYGSIYPGPIGAVISPLLGGYKDFKDLPYACSLCTACDNVCPVRIPLSKLILRHRRVMAEKGITAKAEQRAIKMFAYANSHPGLWKVGMMAGAHAASWFINGGKTPLKFGAISDWMEARDLPEADGESFRSWFKKHQAQEKKNG
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MSIKTSNTDFKTRIRQQIEDPIMRKAVANAQQRIGANRQKMVDELGHWEEWRDRAAQIRDHVLSNLDAYLYQLSEKVTQNGGHVYFARTKEDATRYILQVAQRKNARKVVKSKSMVTEEIGVNHVLQDAGIQVIETDLGEYILQLDQDPPSHVVVPAIHKDRHQIRRVLHERLGYEGPETPEAMTLFIRQKIREDFLSAEIGITGCNFAVAETGSVCLVTNEGNARMCTTLPKTHIAVMGMERIAPTFAEVDVLITMLARSAVGARLTGYNTWLTGPREAGHVDGPEEFHLVIVDNGRSEVLASEFRDVLRCIRCGACMNTCPAYRHIGGHGYGSIYPGPIGAVISPLLGGYKDFKDLPYACSLCTACDNVCPVRIPLSKLILRHRRVMAEKGITAKAEQRAIKMFAYANSHPGLWKVGMMAGAHAASWFINGGKTPLKFGAISDWMEARDLPEADGESFRSWFKKHQAQEKKNG
CCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHCCCHHHHHHCCCEEEECCHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEEEEEEECCCEEEEECCCCCCHHHHCCCCEEEEEEEHHHHCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MSIKTSNTDFKTRIRQQIEDPIMRKAVANAQQRIGANRQKMVDELGHWEEWRDRAAQIRDHVLSNLDAYLYQLSEKVTQNGGHVYFARTKEDATRYILQVAQRKNARKVVKSKSMVTEEIGVNHVLQDAGIQVIETDLGEYILQLDQDPPSHVVVPAIHKDRHQIRRVLHERLGYEGPETPEAMTLFIRQKIREDFLSAEIGITGCNFAVAETGSVCLVTNEGNARMCTTLPKTHIAVMGMERIAPTFAEVDVLITMLARSAVGARLTGYNTWLTGPREAGHVDGPEEFHLVIVDNGRSEVLASEFRDVLRCIRCGACMNTCPAYRHIGGHGYGSIYPGPIGAVISPLLGGYKDFKDLPYACSLCTACDNVCPVRIPLSKLILRHRRVMAEKGITAKAEQRAIKMFAYANSHPGLWKVGMMAGAHAASWFINGGKTPLKFGAISDWMEARDLPEADGESFRSWFKKHQAQEKKNG
5534323231222023203132013002201320021022014302213201310130132003103200220021024210200002123100300120034341220020212212201023003422120010100100120253311200000003223101300133032312311310111013201310230200000010000110000002132212001000300000000330022022012001100112222301000000000232232422210000013323232012102101300301201210000120122121221201000012211222330220010002011033202140201200220031024323213122100200110011110020001000100110132231312112013113233014032200220034233334444
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MSIKTSNTDFKTRIRQQIEDPIMRKAVANAQQRIGANRQKMVDELGHWEEWRDRAAQIRDHVLSNLDAYLYQLSEKVTQNGGHVYFARTKEDATRYILQVAQRKNARKVVKSKSMVTEEIGVNHVLQDAGIQVIETDLGEYILQLDQDPPSHVVVPAIHKDRHQIRRVLHERLGYEGPETPEAMTLFIRQKIREDFLSAEIGITGCNFAVAETGSVCLVTNEGNARMCTTLPKTHIAVMGMERIAPTFAEVDVLITMLARSAVGARLTGYNTWLTGPREAGHVDGPEEFHLVIVDNGRSEVLASEFRDVLRCIRCGACMNTCPAYRHIGGHGYGSIYPGPIGAVISPLLGGYKDFKDLPYACSLCTACDNVCPVRIPLSKLILRHRRVMAEKGITAKAEQRAIKMFAYANSHPGLWKVGMMAGAHAASWFINGGKTPLKFGAISDWMEARDLPEADGESFRSWFKKHQAQEKKNG
1	PROSPECT2	1i1ip	0.111	0.928	1.451	threading_1	MSWDLSPEQIKTRTEQLISDREVRAASTEADKKLSRFDIEMSMR----EDVFQRIVHLQETCDPEARRYLEKSIKMGKRNGLHLSMKKRMSELCIDFNKNLNEDDTSLVFSKA----ELGALPDDFIDEDKYKVTLKYPHYFPVMKKCCVPETRRKMHTRCKQENTAILQQVLELNTAKSTSRVAAFLDDLSQKKECEER-------------------GFEYDGKINAWDLHYYMTQTEELKYSVDQESLKELLSIYQELLG-------LSFEQVPDAHVKATGEVLGQFYLDLYPREGKYNHAACFGLQPGCLLPDGSRMMSVAALVVNFSQPVAGRPSLLRHDEVRTYFHEFGHVMHQICAQTDFARFSGTNVEMLENWVWDVDSLRKKDGHPITDELLEKLVASRLVNTGLLTLRQIVLSKVDQSLHTNATLDAASEYAKYCTEILGVAATPGTNFHSCFKKEGIMNPEVG
2	PPA-I	2g40A	0.222	0.333	1.427	threading_2	-----------------------------------------------------------------------------------------------------------------PLSRAEIQFEDRILDYGAAYTHVELPGAIAKALGNARRVIVPAGI---------------PAPWLTVGMDVLRDEPPLSHAELDRADAVLTGCAVAISETGTIILDHRADQGRRALSLPDFHICVVREDQIVQTVREGVEAVAASVREGR------PLTWLSGGS---GVHGPRRLQVIVVG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3	HHPRED-l	2g40_A	0.231	0.337	5.236	threading_3	----------------------------------------------------P----------LSRAEILHQFEDRILDYGAAYTHVS-AAELPGAIAKALGN--ARRVIVPA-------GIPAPWLTVGMDVLRDE---------------------------------------PPLS------------HAELDRADAVLTGCAVAISETGTIILDHRADQGRALSLIPDFHICVVREDQIVQTVREGVEAVA--ASV----REGRPLTWLSGGS------GPRRLQVIVVG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4	HHPRED-g	2g40_A	0.244	0.337	4.304	threading_4	--------------------------------------------------------------PLSRAEILHQFEDRILDYGAAYTHV-SAAELPGAIAKALG--NARRVIVPA-------GIPAPWLTVGMDVLRD---------------------------------------EPPLSH------------AELDRADAVLTGCAVAISETGTIILDHRADQGRRALSIPDFHICVVREDQIVQTVREG--VEAVAA----SVREGRPLTWLSGGS------GPRRLQVIVVG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5	SAM-T99	2b76B	0.198	0.213	1.776	threading_5	------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TNIQTPAQMAKYHQFSGCINCGLCYAACPQFGLNPEF-IG-----PAAITLAHRDHGKKERQNGVWSCTFVGYCSEVCPKHVDPAAAIQQGKVESSKDFLIATLKPR--------------------------------------------------------------------------
6	PROSPECT2	1w36D	0.088	0.952	1.409	threading_6	KLQKLRPLDVQFALTVAGDEHPAVTLAAALLSHDAGNNEASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYL----NRMWCNERTVARFFNEV----NHAIEVDEALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTKLLAALIQMADGERCRPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDA-----STLHRLLHAGNPLHLDVLVVDEASMI--DLPMMSRLIDAL--------PDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALADLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRQPSRLPEHETTWQRTPVVTRADERILSAAIATRTERRSGSS
7	HHPRED-l	2wdq_B	0.135	0.438	2.417	threading_7	-----------------------------------------------------------------------------MRLEFS-------------------------IYRYN-PD-----------VDDAPRMQD----------------YTLEADDMM----------------------LLDA----LIQLKEK-DPSLSSCRE--GVCGSDGLNMNGKNGLACITPISKKIVIRPLPGLVVDMGQF---YAQYEK------IKPYLLN-NGQ--N-PPA--RE---HLQMPE----QREKLDGLYECILCACCSTSCPSFWWNPDK-----FIGPAGLLADSRDTETDRLDFSVFRCHSIMNCVSVCPKGLNPTRAIGHIKSMLLQRNA---------------------------------------------------------------------------------
8	HHPRED-g	2wdq_B	0.164	0.436	2.091	threading_8	----------------------------------------------------------------------------------------------------------------------------------------------MR---------LEFSIYRNPD------VDDAPYTLEADEMMLLDALIQLKEKPSLSFRR---SCR--EGVCGSDGLNMNGKNGLACITPISAKIVIRPLPGL-PVIRDLGQFYAQYEK------IKPYLL----NNGQ--NPPARE-HL--Q----MPEQREKLDGLYECILCACCSTSCPSFWWNP-----DKFIGPAGLLAAYRIDSRDGLSFSVFRCHSIMNCVSVCPKGLNPTRAIGHIKSMLLQRNA---------------------------------------------------------------------------------
9	SAM-T99	2b76B2	0.198	0.213	1.769	threading_9	------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TNIQTPAQMAKYHQFSGCINCGLCYAACPQFGLNPEF-IG-----PAAITLAHRDHGKKERQNGVWSCTFVGYCSEVCPKHVDPAAAIQQGKVESSKDFLIATLKPR--------------------------------------------------------------------------
10	PROSPECT2	1w63A	0.086	0.958	1.404	threading_10	MPAPIRLRELIRTIRTARTQAEEREMIQKECAAIRSSFLYMHMLGYPAHFGQLECLKLIASQKFTDKRIGYLGAMLL---------LDERQDVHLLMTNCIKN-----DLNHSTQFVQGLALC-TLGCMGSSEMCRDLAGEVEKLLKTSNSYLCAVHVIRKVPELMEMFLPATKNLLNEKNHGVLHTSSPDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQV----RILRLLRILGRNDDDSSEMNDILAQVATNTETSKNVGIMDIKSESLNNDKNIRYVALTTVQTDHNAVQRHRSTIVDCLKDLDVSIKRRAMELSFALVNGNNIRGMMKELLYFLDSCEPEFKADCASGI-FLAAEKYAPSKRWHIDTIMRVLTTAGSYVRDDAVPNLIYKAILGDYSQQPLVQVAAWCIGEYGDLLVSGQCEEEEPIQVTEDEVLDTRFTCTVNRIKKVVSIYGSSIDVEK

Predicted Tertiary Structure


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TM-score=0.538 to 1r4lA SCOP code=d.92.1.5	TM-score=0.634 to 2g40A SCOP code=c.124.1.7	TM-score=0.643 to 2g40A SCOP code=c.124.1.7	TM-score=0.645 to 2g40A SCOP code=c.124.1.7	TM-score=0.411 to 2b76B SCOP code=a.1.2.1