Template-based Modeling Results for YKGE_ECOLI

Submitted Primary Sequence

>Length 239
MNVNFFVTCIGDALKSRMARDSVLLLEKLGCRVNFPEKQGCCGQPAINSGYIKEAIPGMKNLIAALEDNDDPIISPAGSCTYAVKSYPTYLADEPEWASRAAKVAARMQDLTSFIVNKLGVVDVGASLQGRAVYHPSCSLARKLGVKDEPLTLLKNVRGLELLTFAEQDTCCGFGGTFSVKMAEISGEMVKEKVAHLMEVRPEYLIGADVSCLLNISGRLQREGQKVKVMHIAEVLMSR
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MNVNFFVTCIGDALKSRMARDSVLLLEKLGCRVNFPEKQGCCGQPAINSGYIKEAIPGMKNLIAALEDNDDPIISPAGSCTYAVKSYPTYLADEPEWASRAAKVAARMQDLTSFIVNKLGVVDVGASLQGRAVYHPSCSLARKLGVKDEPLTLLKNVRGLELLTFAEQDTCCGFGGTFSVKMAEISGEMVKEKVAHLMEVRPEYLIGADVSCLLNISGRLQREGQKVKVMHIAEVLMSR
CEEEEECCCHHHHHCHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCHHHHHHCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHCCCCCCEEEHHHHHHCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MNVNFFVTCIGDALKSRMARDSVLLLEKLGCRVNFPEKQGCCGQPAINSGYIKEAIPGMKNLIAALEDNDDPIISPAGSCTYAVKSYPTYLADEPEWASRAAKVAARMQDLTSFIVNKLGVVDVGASLQGRAVYHPSCSLARKLGVKDEPLTLLKNVRGLELLTFAEQDTCCGFGGTFSVKMAEISGEMVKEKVAHLMEVRPEYLIGADVSCLLNISGRLQREGQKVKVMHIAEVLMSR
11000012010001213002000200340202010033220011001211223201200320020024221100000000010022003202322310210120021021001000221222422232302000010000033111332012004303102012023321000000001031230012003210220142312100010100001011104432330201000101224
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MNVNFFVTCIGDALKSRMARDSVLLLEKLGCRVNFPEKQGCCGQPAINSGYIKEAIPGMKNLIAALEDNDDPIISPAGSCTYAVKSYPTYLADEPEWASRAAKVAARMQDLTSFIVNKLGVVDVGASLQGRAVYHPSCSLARKLGVKDEPLTLLKNVRGLELLTFAEQDTCCGFGGTFSVKMAEISGEMVKEKVAHLMEVRPEYLIGADVSCLLNISGRLQREGQKVKVMHIAEVLMSR
1	MUSTER	1jflA	0.173	0.824	0.728	threading_1	MKIGILGG-----MGPLATAELFRRIVIKD-VIIFNNPQIP--RTAYILGKGEDPRPQLIWTAKRLEEGADFIIMPCNT-AHAF----------------VEDIRKAIISMIEETAKKVKELGFK-----KAGLLATTGTIVSG----VYEKEFSKY-GVEIMTPDEQKDVM---GIYGVKNLKLGRELLLKTAKILEERGAECIIAG---C-TEVSVVLKQDDLKVPLIDPMDVIAEV
2	SPARKS	3kwla	0.098	0.937	1.414	threading_2	KTCALFNAYAKHLDVQSLLKSAKLYLE-KGQKTIDLPFCYDGGY-YGKIISTHDFLTASAYNLALAKANGVSLIFCEEDAYLNILHAKEVLDNNPEIINSVNEKLKKIVYLNEWVNEFLAWELKSPFDAFVGAEFSR---------IKQSDHFFNKI-HLKAPHFLESFQ--NYAPLLEV-NEASGLLQCAHLRYLGIDLGADFLIAHSLGLFYAFSLKASRDNDNTPTLFLPQIALAG
3	PROSPECT2	1jfla	0.140	0.866	1.159	threading_3	MKIGILGG-----MGPLATAELFRRIVIKHPKVIIFNNPQIPDRTAYILGKGEDPRPQLIWTAKLEECGADFIIMPCNTAHAFVEDIRKAIKIP--IISMIEETAKKVKE----------------LGFKKAGLLATTGTIVSGVY----EKEFSKY-GVEIMTPTEDEQMRGIYEGVKAGNLKLGRELLLKTAKILEERGAECIIAGC----TEVSVVLKQDDLKVPLIVAVKVALEK
4	PPA-I	3dkrA	0.106	0.791	0.867	threading_4	TGVVLLHAYTGSPND---MNFMARALQRSGYGVYVPLFSTVEPLDILTKGNPDIWWAESSAAVAHMTAKYAKVFVFGLSFLKYAEYMNRLAGKSDESTQILAYLPGQLAAIDQFATTVAADLN-LVKQPTFIGQAG----QDELVDGRLAYQLRDALINAARVDFHW------YDDAKHVITVNSAHHALEEDVIAFMQQENE------------------------------------
5	HHPRED-l	3kwl_A	0.097	0.908	7.267	threading_5	TCALFN--AYAKHDVQSLLKSAKLYLEK-GQKTIDLP---FCYDGGGKIISTHDFLTASAYNLALAKANGVSLIFCEEDAYLNILHAKEVLDNNPEIINSVNEKLKEIVYLNEWV-NEFLAWELKSPFAFVGA-----EFSRIKQS----DHFFNKI-HLKAPHFLESFQNY---APLLEVNEASGLLQCAHLRYLGIDLGADFLIAHSLGLFYAFENLSLKAKDNTPTLFLPQIAL--
6	HHPRED-g	3kwl_A	0.087	0.912	7.208	threading_6	PKTCALFNAYAKHDVQSLLKSAKLYLEK-GQKTIDLP---FCYDGGGKIISTHDFLTASAYNLALAKAGVS-LIFCEEDAYLNILHAKEVLDNNPEIINSVNEKLKEIVYLNEWV-NEFLAWELKSPFDAVGA-----EFSRIKQS----DHFFNKI-HLKAPHFLESFQNY---APLLEVNEASGLLQCAHLRYLGIDLGADFLIAHSLGLFYAFENLSLKAKDNTPTLFLPQIAL--
7	SP3	3kwla	0.094	0.937	1.233	threading_7	KTCALFNAYAKHLDVQSLLKSAKLYLEKGQKTIDLPFC-YDGGY-YGKIISTHDFLTASAYNLALAKANGVSLIFCEEDAYLNILHAKEVLDNNPEIINSVNEKLKKVYELNEWVNEFLAWELKSPFDAFVGAEF--SRIKQ-------SDHFFNKIH---LKAPHFLESFQNYAPLLEV-NEASGLLQCAHLRYLGIDLGADFLIAHSLGLFYAFSLKASRDNDNTPTLFLPQIALNK
8	SAM-T99	3dm5A3	0.145	0.347	0.806	threading_8	YKVGVV---CSDTWRPGAYHQLRQLLDRYHIEVFGNPQE-------------KDAIKLAKEGVDYFKSGVDIIIVDTAG----------RHKEDKALIEEMKQISNVIH----------------------------------------------------------------------------------------------------------------------------------
9	MUSTER	3dkrA	0.085	0.891	0.707	threading_9	DTGVVLLHAYTG--SPNDMNFMARALQRSGYGVYVPL--TVEPLDILTKGNPDIWWAESSAAVAHMTAKYAKVFVFGLSLGGIFAMKALETLPGITILPGKHHLVPGFLKYAEYMNRLAGKSDESTQILAY----LPGQLAAIDQFATTVAADLNLVKQPTFIGQAGQDE---------LVDGRLAYQLRDALINA---ARVDFHWYDDAKHVITVNSAHHA------EEDVIAFMQQE
10	SPARKS	2fn8a	0.104	0.883	0.877	threading_10	GKMAIVISTLNNPWFVVLAETAKQRAEQLGYEATIFDSQ----------NDTAKESAHFDAIIA---AGYDAIIFNPTDAIANVKRAKECVDRGINARGLAVANYYGGVLMGEYFVKFLKEKYPDAKEIPYAELLGILSAQPTWDRSNGFHSVVDQYPEFKMVAQQSAEF---------------DRDTAYKVTEQILQAHPEAIWCGNDAMALGAMKACEAAGTDIYIFDVINAIKEG

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.827 to 1jflA SCOP code=c.78.2.1	TM-score=0.786 to 1r1dA SCOP code=c.69.1.29	TM-score=0.500 to 1b73A SCOP code=c.78.2.1	TM-score=0.835 to 1jflA SCOP code=c.78.2.1	TM-score=0.661 to 1r1dA SCOP code=c.69.1.29