Template-based Modeling Results for YKGD_ECOLI

Submitted Primary Sequence

>Length 284
MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTLRPGNVVLLPQNSAHRLSHVDNESTCIVCGTLRLQHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRERVRQLAP
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTLRPGNVVLLPQNSAHRLSHVDNESTCIVCGTLRLQHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRERVRQLAP
CCHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCCCCEEEEEEEEEEEEEEEECCCCEEEECCCEEEEECCCCCEEEEECCCCCEEEEEEEEEECCCHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTLRPGNVVLLPQNSAHRLSHVDNESTCIVCGTLRLQHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRERVRQLAP
42101200210212000000000012120111113110010000020101020232210202200000002210110011333200000000102220210021013201012122222131023001101220323221120001100000001001211232323322221122110000021024112220103100220300210002001211210011001200020002013342120210022011212100020004213001121222135224
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAKLEMPTGEIFTLRPGNVVLLPQNSAHRLSHVDNESTCIVCGTLRLQHSARYFLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYRERVRQLAP
1	MUSTER	3gbgA	0.141	0.901	2.013	threading_1	------------KKSFQTNVYRMSKFDTYIFNNLYINDYKMFWIDSGIAKLIDKNCLSYEINSSSIILLKKNSIQRFSLTSLSDENINVSVITISDSFIRSLKSYIKDLLLWNCEH-----NDIAVLSEVVNGFREINYS-----DEFLKVFFSGFFSKVEKKYNSI---FITDDLDAMEKISCLVKSDITRNWRWADICGELRTNRMILKKELESR-GVKFRELINSIRISYSISLMKTGEFKIKQIAYQSGFASVSYFSTVFKSTMNVAPSEYLFMLTGV--
2	SPARKS	3gbga	0.140	0.905	3.290	threading_2	------------KKSFQTNVYRMSKFDTYIFNNLYINDYKMFWIDSGIAKLIDNCLVSYEINSSSIILLKKNSIQRFSLTSLSDENINVSVITISDSFIRSLKSYILGNLLLWNCEHNDIAVLSEVVNGF-----REINYSDEFLKVFFSGFFSKV-------EKKYNSIFITDDLDAMEKISCLVKSDITRNWRWADICGELRTNRMILKKELESR-GVKFRELINSIRISYSISLMKTGEFKIKQIAYQSGFASVSYFSTVFKSTMNVAPSEYLFMLTGV--
3	PROSPECT2	3gbgA	0.152	0.901	3.093	threading_3	KKSFQTNVYRMSKFDTYIFNNLYINDY------------KMFWIDSGIAKLIDKNCLSYEINSSSIILLKKNSIQRFSLTSLSDENINVSVITISDSFIRSLKSYILDLLLWNCEHN-----DIAVLSEVVNGFREINYSDEFLKVFFSGFFSKV--------EKKYNSIFITDDLDAMEKISCLVKSDITRNWRWADICGELRTNRMILKKELES-RGVKFRELINSIRISYSISLMKTGEFKIKQIAYQSGFASVSYFSTVFKSTMNVAPSEYLFMLTGV--
4	PPA-I	3gbgA	0.127	0.912	2.467	threading_4	------------KKSFQTNVYRMSKFDTYIFNNLYINDYKMFWIDSGIAKLIDKNCLSYEINSSSIILLKKNSIQRFSLTSLSDENINVSVITISDSFIRSLKSYILG--NKDLLLWNCEHNDIAVLSEVVNGFREINYSDEFLKVFFSGFFSKVEKKY--------NSIFITDDLDAMEKISCLVKSDITRNWRWADICGELRTNRMILKKELESR-GVKFRELINSIRISYSISLMKTGEFKIKQIAYQSGFASVSYFSTVFKSTMNVAPSEYLFMLTGV--
5	HHPRED-l	3gbg_A	0.119	0.891	3.872	threading_5	---------KKSF--Q-TNVYRMS-KFDTYINNLYINDYKMFWIDSGIAK-LIDKNVSYEINSSSIILLKKNSIQRFSLTSDENINVSVITISDSFIRS-LKSYILG-----DLLLWNCEHNDIAVLSEVVNGFREI-NYSDEFLKVFFSGFFSKVEKKYN----SI---FITDDLDAMEKISCLVKSDITRNWRWADICGELRTNRMILKKELE-SRGVKFRELINSIRISYSISLMKTGEFKIKQIAYQSGFASVSYFSTVFKSTMNVAPSEYLFMLTGV--
6	HHPRED-g	3gbg_A	0.138	0.891	3.568	threading_6	---------KKSFQTNVYRMSKFDTYIFNNLY---INDYKMFWIDSGIAK-LIDKNVSYEINSSSIILLKKNSIQRFSLLSDENINVSVITISDS--FIRSLKSYILDLLLWNCE-----HNDIAVLSEVVNGFRE-INYSDEFLKVFFSGFFSKVEKKYN--SI-----FITDDLDAMEKISCLVKSDITRNWRWADICGELRTNRMILKKELE-SRGVKFRELINSIRISYSISLMKTGEFKIKQIAYQSGFASVSYFSTVFKSTMNVAPSEYLFMLTGV--
7	SP3	3gbga	0.140	0.905	3.354	threading_7	------------KKSFQTNVYRMSKFDTYIFNNLYINDYKMFWIDSGIAKLIDKNCLSYEINSSSIILLKKNSIQRFSLTSLSDENINVSVITISDSFIRSLKSYINKDLLLWNCEHNDIAVLSEVVNGF-----REINYSDEFLKVFFSGFFSKV-------EKKYNSIFITDDLDAMEKISCLVKSDITRNWRWADICGELRTNRMILKKELESR-GVKFRELINSIRISYSISLMKTGEFKIKQIAYQSGFASVSYFSTVFKSTMNVAPSEYLFMLTGV--
8	SAM-T99	2k9sA	0.233	0.363	2.711	threading_8	MDN------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RVREACQYISDHLADSFDIASVAQHVCLSPSRLSHLFRQQLGISVLSWREDQRISQAKLLLSTTRMPIATVGRNVGFDDQLYFSRVFKKCTGASPSEFRA-------
9	MUSTER	3oioA	0.239	0.384	1.093	threading_9	---------------------------------------------------------------------------------------------------------------------------------------------------------------------------NAGSQPKLTEAVSL--ANIEEPLSTDDIAYYVGVSRRQLERLFKQYLGTVPSKYYLELRLNRARQLLQQTSKSIVQIGLACGFSSGPHFSSTYRNHFNITPREERAQR--AQP
10	SPARKS	2k9sa	0.208	0.373	2.096	threading_10	------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MDNRVREACQYISDHLADSFDIASVAQHVCLSPSRLSHLFRQQLGISVLSWREDQRISQAKLLLSTTRMPIATVGRNVGFDDQLYFSRVFKKCTGASPSEFRAGCE----

Predicted Tertiary Structure


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TM-score=0.483 to 1xjaC SCOP code=b.82.4.1	TM-score=0.493 to 1xjaC SCOP code=b.82.4.1	TM-score=0.494 to 1xjaC SCOP code=b.82.4.1	TM-score=0.490 to 1xjaC SCOP code=b.82.4.1	TM-score=0.492 to 1xjaC SCOP code=b.82.4.1