Template-based Modeling Results for YKFC_ECOLI

Submitted Primary Sequence

>Length 376
MQRKLATWAATDPSLRIQRLLRLITQPEWLAEAARITLSSKGAHTPGVDGVNKTMLQARLAVELQILRDELLSGHYQPLPARRVYIPKSNGKLRPLGIPALRDRIVQRAMLMAMEPIWESDFHTLSYGFRPERSVHHAIRTVKLQLTDCGETRGRWVIEGDLSSYFDTVHHRLLMKAVRRRISDARFMTLLWKTIKAGHIDVGLFRAASEGVPQGGVISPLLSNIMLNEFDQYLHERYLSGKARKDRWYWNNSIQRGRSTAVRENWQWKPAVAYCRYADDFVLIVKGTKAQVEAIREECRGVLEGSLKLRLNMDKTKIPHVNDGFIFLGHRLIRKRSRYGEMRVVSTIPQEKARNFAASLTALLWKVRISGEILLG
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MQRKLATWAATDPSLRIQRLLRLITQPEWLAEAARITLSSKGAHTPGVDGVNKTMLQARLAVELQILRDELLSGHYQPLPARRVYIPKSNGKLRPLGIPALRDRIVQRAMLMAMEPIWESDFHTLSYGFRPERSVHHAIRTVKLQLTDCGETRGRWVIEGDLSSYFDTVHHRLLMKAVRRRISDARFMTLLWKTIKAGHIDVGLFRAASEGVPQGGVISPLLSNIMLNEFDQYLHERYLSGKARKDRWYWNNSIQRGRSTAVRENWQWKPAVAYCRYADDFVLIVKGTKAQVEAIREECRGVLEGSLKLRLNMDKTKIPHVNDGFIFLGHRLIRKRSRYGEMRVVSTIPQEKARNFAASLTALLWKVRISGEILLG
CCHHHHHHHHCCCCCCHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCEEEEEEECCHHHHHHHHHHHHHHHHHHHCCEECCCCCEEEECCCCCEECCEEEEEECCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCEECC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MQRKLATWAATDPSLRIQRLLRLITQPEWLAEAARITLSSKGAHTPGVDGVNKTMLQARLAVELQILRDELLSGHYQPLPARRVYIPKSNGKLRPLGIPALRDRIVQRAMLMAMEPIWESDFHTLSYGFRPERSVHHAIRTVKLQLTDCGETRGRWVIEGDLSSYFDTVHHRLLMKAVRRRISDARFMTLLWKTIKAGHIDVGLFRAASEGVPQGGVISPLLSNIMLNEFDQYLHERYLSGKARKDRWYWNNSIQRGRSTAVRENWQWKPAVAYCRYADDFVLIVKGTKAQVEAIREECRGVLEGSLKLRLNMDKTKIPHVNDGFIFLGHRLIRKRSRYGEMRVVSTIPQEKARNFAASLTALLWKVRISGEILLG
4233112223333222032002100213100200210142312312111112121012102210210112012232312211101012232421110211230100120001001100210022102102233102100200210012103220100010012210221203100200333122230010012013113132111121331122101000000000011002002221222424433221121023222221433232331000010010000002123210310131021002210312123330200103310100001001232422212011212333033001101200211332222125
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MQRKLATWAATDPSLRIQRLLRLITQPEWLAEAARITLSSKGAHTPGVDGVNKTMLQARLAVELQILRDELLSGHYQPLPARRVYIPKSNGKLRPLGIPALRDRIVQRAMLMAMEPIWESDFHTLSYGFRPERSVHHAIRTVKLQLTDCGETRGRWVIEGDLSSYFDTVHHRLLMKAVRRRISDARFMTLLWKTIKAGHIDVGLFRAASEGVPQGGVISPLLSNIMLNEFDQYLHERYLSGKARKDRWYWNNSIQRGRSTAVRENWQWKPAVAYCRYADDFVLIVKGTKAQVEAIREECRGVLEGSLKLRLNMDKTKIPHVNDGFIFLGHRLIRKRSRYGEMRVVSTIPQEKARNFAASLTALLWKVRISGEILLG
1	MUSTER	3du6A	0.136	0.859	1.050	threading_1	YDYDAIPWLQNVEPNLRPKLLLKHN-LFLLDNIVKPIIAF----PITLNGHEYISFESKVFHKLKKMKYLVEVQDEVKPRGVLNIIPKQDNFRAIVSIFPDSAR--KPFFKLLTSKIYKV----LEEKYKTSGSLYTCWSEFTQKT-----QGQIYGIKVDIRDAYGNVKIPVLCKLIQSHLLDSEKKNFIVDHISNQFVARRKIYKWNHGLLQGDPLSGCLCELYMAFMDRLYFS------------------------------NLDKDAFIHRTVDDYFFCSP-HPHKVYDFELLIKGVY------QVNPTKTRTNHPQDEIPYCGKIFNLTTEIRHKFKLWNFNNQISDDNPARFLQKAMDFPFICNSFTKF
2	SPARKS	3kyla	0.125	0.872	2.335	threading_2	HKDAIPWLQNVEPNLRPKLLLKHNLFDNIVKPIIAFIKTLNGHEIKFIRKEEYISFESKVFHKLKKMKYLVEVQDEVKPRGVLNIIPKQDNFRAIVSIFP------DSARKPFFKLLTSKIYKVLEEKYKTSGSLYTCWSEFTQKT-----QGQIYGIKVDIRDAYGNVKIPVLCKLIQSHLLDSEKKNFIVDHISNQFVARRKIYKWNHGLLQGDPLSGCLCELYMAFMDRLY------------------------------FSNLDKDAFIHRTVDDYFFCSPHP-HKVYDFELLIKGV------YQVNPTKTRTRHPQDEIPYCGKIFNLTTHKFKLWNFNNQISDDNPARFLQKAMDFPFICNSFTKFEFN
3	PROSPECT2	3du5A	0.131	0.872	2.855	threading_3	MVLKNFRLCKKHKTKKILALLQEIITTTNLKRFYKVVEKLNGHEIKFIRKEEYISFESKVFHKLKKMKYLVEVQDEVKPRGVLNIIPKQDNFRAIVSIFPDSAR------KPFFKLLTSKIYKVLEEKYKTSGSLYTCWSEFTQKT-----QGQIYGIKVDIRDAYGNVKIPVLCKLIQSHLLDSEKKNFIVDHISNQFVFRRKIYKWNHGLLQGDPLSGCLCELYMAFMDRLY------------------------------FSNLDKDAFIHRTVDDYFFCS-PHPHKVYDFELLIKGV------YQVNPTKTRTNHPQDEIPYCGKIFNTLYKLPPNYEIRHKFKSSTVRAYASRAFKKIVTYKGGKRKASI
4	PPA-I	3du6A2	0.138	0.654	1.366	threading_4	------------------------------------------------RKEEYISFESKVFHKLKKMKYLVEVQDEVKPRGVLNIIPKQDNFRAIVSIFP--DSARKPFFKLLTSKIYKVLEEK----YKTSGSLYTCWSEFTQKT-----QGQIYGIKVDIRDAYGNVKIPVLCKLIQSHLLDSEKKNFIVDHISNQFVFRRKIYKWNHGLLQGDPLSGCLCELYMAFMDRLYFSNLDKDA------------------------------FIHRTVDDYFFCSPH-PHKVYDFELLIKGVYQ------VNPTKTRTRHPQDEIPYCGKIFNL---TTRQVRTL-------------------------------
5	HHPRED-l	3kyl_A	0.137	0.854	6.905	threading_5	KNFRLCKKHKTKKPVQILALLQEIITTTNLKRFYKVVEKLTQSSCYDYNGHEIKFIREEYISFESKVFHKLKKMKYLVEKPRLNIIPKQ-DNFRAIVIFPSARKPFFKLLTSKIYKVLE-------EKYKTSGSLYTCWSEFTQK-----TQGQIYGIKVDIRDAYGNVKIPVLCKLIQSILLDSEKKNFIVDHISNQFVARRKIYKWNHGLLQGDPLSGCLCELYMAFMDRLYFSNL------------------------------DKDAFIHRTVDDYFFCSP-HPHKVYDFELLIKGV------YQVNPTKTRTNLPQDEIPYCGKIFNLTYKLPPNYEIRHKFKDNPARFL-QKAMDF--PFICNS-FTK-
6	HHPRED-g	3kyl_A	0.143	0.835	6.429	threading_6	LQKRFYKVVNVEPNLRPKHNLFLLDNIVKIIAFYYKPIKTLNGH----EIKFI--RKEEYISFESKVFHKLKKMKYLVRGV-LNIIPKQDN-FRAIVFPSPFFKLLTSKIYKVL----EE-------KYKTSGS----LYTCWSEFTQK-TQGQIYGIKVDIRDAYGNVKIPVLCKLIQSILLDSEKKNFIVDHISNQFVARRKIYKWNHGLLQGDPLSGCLCELYMAFMDRLYFSNL------------------------------DKDAFIHRTVDDYFFCSP-HPHKVYDFELLIKGV------YQVNPTKTRTNLPQDEIPYCGKIFNLRTKLPPNYEIRHKSDDNPARFL-QKAMDFFITVFNDQRTVFA
7	SP3	3kyla	0.122	0.872	2.229	threading_7	HKDAIPWLQNVEPNLRLLKHNLFLLDNVKPIIAFYYKKTLNGHEIKFIRKEEYISFESKVFHKLKKMKYLVEVQDEVKPRGVLNIIPKQDN-FRAI-VSIFPDSARKPFFKLLTSK----IYKVLEEKYKTSGSLYTCWSEFTQKT-----QGQIYGIKVDIRDAYGNVKIPVLCKLIQSHLLDSEKKNFIVDHISNQFVARRKIYKWNHGLLQGDPLSGCLCELYMAFMDRLY------------------------------FSNLDKDAFIHRTVDDYFFCSPHP-HKVYDFELLIKGV------YQVNPTKTRTRHPQDEIPYCGKIFNLTTHKFKLWNFNNQISDDNPARFLQKAMDFPFICNSFTKFEFN
8	SAM-T99	1rw3A1	0.159	0.686	0.760	threading_8	-------------------------MGLAVRQAPLIIPLKATSTPVSIKQYPMSQEARLGPHIQRLLDQGILVPCQSPWNTPLLPVKKPGNDYRPVQDLREVNKRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFEW-------------------RDPEMGIS---------------------GQLTWTRLPQGFKNSPTLFDEALHRADFRIQHPD---------------------------------LILLQYVDDLLLAAT-SELDCQQGTRALLQTL-GNLGYRASAKKAQIC--QKQVKYLGYLLKEGQRWLTEARKETVMGQPTPKTPRQLR----------------
9	MUSTER	3du6A2	0.158	0.638	1.011	threading_9	---------------------------------------------------RKEEYISFESKVFHKLKKM-VQDEVKPRG-VLNIIPKQDNFRAIVSIP---DSARKPFFKLLTSKIYKV----LEEKYKTSGSLYTCWSEFTQKT-----QGQIYGIKVDIRDAYGNVKIPVLCKLIQSHLLDSEKKNFIVDHISNQFVAFRKIYKWNHGLLQGDPLSGCLCELYMAFMDRLYFS------------------------------NLDKDAFIHRTVDDYFFCSP-HPHKVYDFELLIKGVY------QVNPTKTRTNHPQDEIPYCGKIFNL---TTRQVRTL-------------------------------
10	SPARKS	1sh0a	0.135	0.888	1.294	threading_10	MRDQLKPFTEPRGKPPLEAAKKTIINVLSFAQACASLDKTT---SSGHDCWNGESFTGKLADQASKANLMFEEG--KNMTPVYTGALKGKIKKRLLWGSDLATMIRCARAFGGLMDELKTHTLPIRVGMNMNEDGPIIFERHS---------RYRYHYDADYSRWDSTQQLAAALEIMVKFSSEPHLAQVVAEDLLSPVDVGDFTISINEGLPSGVPCTSQWNSIAHWLLTLCALSEVTNL----------------------SPDIIQANSLFSFYGDDEIVSTDIKLD-----PEKLTAKLKE-YGLKPTRPDLVISEDLNGLTFLRRTVTRDPADPSETMIPHSQRPIQLMSLLGEAPAFYSKISKLVIAELG

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.499 to 1mu2A SCOP code=c.55.3.1	TM-score=0.524 to 1mu2A SCOP code=c.55.3.1	TM-score=0.496 to 1mu2A SCOP code=c.55.3.1	TM-score=0.522 to 1mu2A SCOP code=c.55.3.1	TM-score=0.532 to 1mu2A SCOP code=c.55.3.1