Template-based Modeling Results for YKFA_ECOLI

Submitted Primary Sequence

>Length 287
MNNSEGLKSFQQSLADLPQWVSERLLQQINQLTNYEPVIGIMGKTGVGKSSLCNALFAGDISPVSDVAACTREPLRFRLQVGDRYITLMDLPGVGESGARDTEYAALYREQLPRLDLVLWLIKADDRALTVDEHFYHQVIGEVYRHKVLFVISQSDKAEPTSGGGQLSTAQKQNISRKICLLHELFQPVHPVCAVSVRLQWGLKVMAERMIKCLPREATSPVVSQLHPSFRTTVVREQARSDFGETVGAVLDSISAFPLIPAPVRAVIQAVRTTVVSVARAVWDFFF
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MNNSEGLKSFQQSLADLPQWVSERLLQQINQLTNYEPVIGIMGKTGVGKSSLCNALFAGDISPVSDVAACTREPLRFRLQVGDRYITLMDLPGVGESGARDTEYAALYREQLPRLDLVLWLIKADDRALTVDEHFYHQVIGEVYRHKVLFVISQSDKAEPTSGGGQLSTAQKQNISRKICLLHELFQPVHPVCAVSVRLQWGLKVMAERMIKCLPREATSPVVSQLHPSFRTTVVREQARSDFGETVGAVLDSISAFPLIPAPVRAVIQAVRTTVVSVARAVWDFFF
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHCCCCEECCCCCCCCCCEEEEEEEECCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MNNSEGLKSFQQSLADLPQWVSERLLQQINQLTNYEPVIGIMGKTGVGKSSLCNALFAGDISPVSDVAACTREPLRFRLQVGDRYITLMDLPGVGESGARDTEYAALYREQLPRLDLVLWLIKADDRALTVDEHFYHQVIGEVYRHKVLFVISQSDKAEPTSGGGQLSTAQKQNISRKICLLHELFQPVHPVCAVSVRLQWGLKVMAERMIKCLPREATSPVVSQLHPSFRTTVVREQARSDFGETVGAVLDSISAFPLIPAPVRAVIQAVRTTVVSVARAVWDFFF
55433113201310330032003202321342232301000002121010000010041310101312102321020202133120000101112321220220011013102401000000203241222022002200122342210000000121332222222211122101310110131023112000001323210310031013003322222112201210111101220433113000000110241221321021002101200110021002111
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MNNSEGLKSFQQSLADLPQWVSERLLQQINQLTNYEPVIGIMGKTGVGKSSLCNALFAGDISPVSDVAACTREPLRFRLQVGDRYITLMDLPGVGESGARDTEYAALYREQLPRLDLVLWLIKADDRALTVDEHFYHQVIGEVYRHKVLFVISQSDKAEPTSGGGQLSTAQKQNISRKICLLHELFQPVHPVCAVSVRLQWGLKVMAERMIKCLPREATSPVVSQLHPSFRTTVVREQARSDFGETVGAVLDSISAFPLIPAPVRAVIQAVRTTVVSVARAVWDFFF
1	MUSTER	3ievA	0.210	0.847	1.616	threading_1	--------------------------------HMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNAQIIFLDTPGIYEPKVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP-LNKPVIVVINKIDKIGPAKN-----------VLPLIDEIHKKHPELTEIVPISALKGANLDELVKTILKYLPEGPEDMITDLPLRLLAAEIVREKAMMLVPTSIAVKINEIKDANPNMLVIKGEIIVDRKEIGKRARQELELIL
2	SPARKS	3r9wa	0.222	0.801	3.460	threading_2	--------------------------------HMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNAQIIFLDTPGIYEPKVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFI-KPLNKPVIVVINKIDKIGP-----------AKNVLPLIDEIHKKHPELTEIVPISALKGANLDELVKTILKYLPEGPEDMITDLPLRLLAAEIVREKAMEEVPTSIAVKINEIKPGDANPLVIKGEIIVDREN-------------
3	PROSPECT2	1wf3A	0.191	0.840	2.432	threading_3	EK-------------------------------TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKY---------------PEEAMKAYHELLPEAEPRMLSALDERQVAELKADLLALMPEGPFFAKSDQTFGEWVAEILREEAMKRLWHAVATKVEEVAERENERPSQKAIVGRKIKEIGQATRKQLEALL
4	PPA-I	3ievA1	0.235	0.624	2.244	threading_4	--------------------------------HMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNAQIIFLDTPGIYEPDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIK-PLNKPVIVVINKIDKIGPAKNV-----------LPLIDEIHKKHPELTEIVPISALKGANLDELVKTILKYLPEFPEDMIT----------------------------------------------------------------
5	HHPRED-l	2hjg_A	0.167	0.815	1.629	threading_5	GTHGLGLGDLLDAVA-----------EHFKNYNEEVIQFCLIGRPNVGKSSLVNA-LGEERVIVS---------VDTSFTYNQQEFVIVDTAG-RKKGKTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHE--AGKAVVIVVNKWDAVDKDEST-KEF---EEN-----IRDHFQFLDYAPILF-SALTKKRIHTL-PAIIKASENHSLRVQTNVLNDVI-------DAVA-NPPTHGSYATQVSVKPL-HFSYERFLNRIRDAF--------GFE-
6	HHPRED-g	2hjg_A	0.158	0.906	2.685	threading_6	GEPYPISGTHGLGLGDLLDAVAEHFKNIPEKYNEEVIQFCLIGRPNVGKSSLVNA-LGEERVIVS---------VDTSFTYNQQEFVIVDTAG-RKKGKETTEKYSVLRKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAH--EAGKAVVIVVNKWDAVDKDEST-KEFEE--------NIRDHFQFLDYAPILF-SALTKKRIHTL-PAIIKASENHSLRVQTNVLNDVI-DAVA-NPTPTHNGSRLKIYYATQVSVKPPSFVVFVNDPYERF-LENRIRDAFGFEG
7	SP3	3r9wa	0.212	0.822	3.418	threading_7	--------------------------------HMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNAQIIFLDTPGIYEPKVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFI-KPLNKPVIVVINKIDKIGP-----------AKNVLPLIDEIHKKHPELTEIVPISALKGANLDELVKTILKYLPEGPEDMITDLPLRLLAAEIVREKAMEEVPTSIAVKINEIKPGDPNMLVIKGEIIVDREN-------LKPIII
8	SAM-T99	1xzpA	0.165	0.927	3.193	threading_8	-VELDYPDEIETNTGEVVTRLERIKEKLTGILLNRGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSENDVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERI----KNKRYLVVINKVDVVE------------KINEEEIKNKL----GTDRHMVKISALKGEGLEKLEESIYRETQEIFERGSDSLITNLRQKQLLLEDAIKSLKEGMPVDMASIDLERALNLLDEVTGRSFREDLLDTIFSNFCVGK
9	MUSTER	1wf3A	0.207	0.840	1.584	threading_9	-------------------------------EKTYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKY--------------PEEAMKAYHELL-PEAEPRMLSALDERQVAELKADLLALMPEGPFYAKSDQTFGEWVAEILREEAMKEVPYAVATKVEEVAERENGVLYIKAILYVERKEIGQATRKQLEALL
10	SPARKS	3ieva	0.216	0.822	3.171	threading_10	--------------------------------HMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNAQIIFLDTPGIYEPKVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFI-KPLNKPVIVVINKIDKIGP-----------AKNVLPLIDEIHKKHPELTEIVPISALKGANLDELVKTILKYLPEGPEDMITDLPLRLLAAEIVREKAMMEVPTSIAVKINEIKPGDANPLVIKGEIIVDRENLKPIII-------

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.748 to 1wf3A SCOP code=c.37.1.8	TM-score=0.816 to 1wf3A SCOP code=c.37.1.8	TM-score=0.724 to 1wf3A SCOP code=c.37.1.8	TM-score=0.804 to 1wf3A SCOP code=c.37.1.8	TM-score=0.710 to 1wf3A SCOP code=c.37.1.8