Template-based Modeling Results for YJJW_ECOLI

Submitted Primary Sequence

>Length 287
MNSRCALVSKIIPFSCVDGPGSRLALFLQGCNLRCKNCHNPWTMGRCNDCGECVPQCPHQALQIVDGKVVWNAVVCEQCDTCLKRCPQHATPMAQSMSVDEVLSHVRKAVLFIEGITVSGGEATTQLPFVVALFTAIKNDPQLRHLTCLVDSNGMLSETGWEKLLPVCDGAMLDLKAWGSECHQQLTGRDNQQIKRSIYLLAERGKLAELRLLVIPGQVDYLQHIEELAAFIKGLGDVPVRLNAFHAHGVYGEAQSWASATPEDVEPLADALKVRGVSRLIFPALYL
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280

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Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MNSRCALVSKIIPFSCVDGPGSRLALFLQGCNLRCKNCHNPWTMGRCNDCGECVPQCPHQALQIVDGKVVWNAVVCEQCDTCLKRCPQHATPMAQSMSVDEVLSHVRKAVLFIEGITVSGGEATTQLPFVVALFTAIKNDPQLRHLTCLVDSNGMLSETGWEKLLPVCDGAMLDLKAWGSECHQQLTGRDNQQIKRSIYLLAERGKLAELRLLVIPGQVDYLQHIEELAAFIKGLGDVPVRLNAFHAHGVYGEAQSWASATPEDVEPLADALKVRGVSRLIFPALYL
CCCCEEEEEEEEECCEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCEECCCCCEEEEHHHCCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHCCEEEEECCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MNSRCALVSKIIPFSCVDGPGSRLALFLQGCNLRCKNCHNPWTMGRCNDCGECVPQCPHQALQIVDGKVVWNAVVCEQCDTCLKRCPQHATPMAQSMSVDEVLSHVRKAVLFIEGITVSGGEATTQLPFVVALFTAIKNDPQLRHLTCLVDSNGMLSETGWEKLLPVCDGAMLDLKAWGSECHQQLTGRDNQQIKRSIYLLAERGKLAELRLLVIPGQVDYLQHIEELAAFIKGLGDVPVRLNAFHAHGVYGEAQSWASATPEDVEPLADALKVRGVSRLIFPALYL
55331010010120001102100000001001130410121112020000030122023301212322000002202202100330233122113212132001102311111301000111111212001100100131023320000010101013200210021010000103211230012002230220220021014322200010000122112231022002003202301010000021011021222220223103200300332202200012234
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MNSRCALVSKIIPFSCVDGPGSRLALFLQGCNLRCKNCHNPWTMGRCNDCGECVPQCPHQALQIVDGKVVWNAVVCEQCDTCLKRCPQHATPMAQSMSVDEVLSHVRKAVLFIEGITVSGGEATTQLPFVVALFTAIKNDPQLRHLTCLVDSNGMLSETGWEKLLPVCDGAMLDLKAWGSECHQQLTGRDNQQIKRSIYLLAERGKLAELRLLVIPGQVDYLQHIEELAAFIKGLGDVPVRLNAFHAHGVYGEAQSWASATPEDVEPLADALKVRGVSRLIFPALYL
1	MUSTER	3c8fA	0.304	0.801	2.406	threading_1	--SVIGRIHSFESCGTVDGPGIRFITFFQGCLMRCLYCHNRDTW--DTHGG-------------------------------------------KEVTVEDLMKEVVTYRHFMGGVTASGGEAILQAEFVRDWFRACKKE----GIHTCLDTNGFVRRPVIDELLEVTDLVMLDLKQMNDEIHQNLVGVSNHRTLEFAKYLANKNVKVWIRYVVVPGWSDDDDSAHRLGEFTRDMGNVKIELLPYHELGKHKWVAMGEEYKKETMERVKGILEQYGHKV-----MF-
2	SPARKS	3c8fa	0.300	0.801	3.855	threading_2	--SVIGRIHSFESCGTVDGPGIRFITFFQGCLMRCLYCHNRDTWDT---------------------------------------------HGGKEVTVEDLMKEVVTYRHFMGGVTASGGEAILQAEFVRDWFRACKK----EGIHTCLDTNGFVRRPVIDELLEVTDLVMLDLKQMNDEIHQNLVGVSNHRTLEFAKYLANKNVKVWIRYVVVPGWSDDDDSAHRLGEFTRDMGNVKIELLPYHELGKHKWVAMGEEYKKETMERVKGILEQYGHKVMF------
3	PROSPECT2	3c8fA	0.300	0.801	4.310	threading_3	--SVIGRIHSFESCGTVDGPGIRFITFFQGCLMRCLYCHNRDTWDT---------------------------------------------HGGKEVTVEDLMKEVVTYRHFMGGVTASGGEAILQAEFVRDWFRACKK----EGIHTCLDTNGFVRRPVIDELLEVTDLVMLDLKQMNDEIHQNLVGVSNHRTLEFAKYLANKNVKVWIRYVVVPGWSDDDDSAHRLGEFTRDMGNVKIELLPYHELGKHKWVAMGEEYKKETMERVKGILEQYGHK------VMF
4	PPA-I	3c8fA	0.300	0.801	3.007	threading_4	--SVIGRIHSFESCGTVDGPGIRFITFFQGCLMRCLYCHNRDTWDTH---------------------------------------------GGKEVTVEDLMKEVVTYRHFMGGVTASGGEAILQAEFVRDWFRACKKE----GIHTCLDTNGFVRRPVIDELLEVTDLVMLDLKQMNDEIHQNLVGVSNHRTLEFAKYLANKNVKVWIRYVVVPGWSDDDDSAHRLGEFTRDMGNVKIELLPYHELGKHKWVAMGEEYKKETMERVKGILEQYGHKVMF------
5	HHPRED-l	3c8f_A	0.291	0.801	5.473	threading_5	--SVIGRIHSFESCGTVDGPGIRFITFFQGCLMRCLYCHNRDTWDTH---------------------------------------------GGKEVTVEDLMKEVVTMNASGGGVTASGGEAILQAEFVRDWFRACKK----EGIHTCLDTNGFVYDPVIDELLEVTDLVMLDLKQMNDEIHQNLVGVSNHRTLEFAKYLANKNVKVWIRYVVVPGWSDDDDSAHRLGEFTRDMGVEKIELLPYHELGKHKWVAGVKPPKKETMERVKGILEQYGHKVMF------
6	HHPRED-g	3c8f_A	0.292	0.822	4.623	threading_6	--SVIGRIHSFESCGTVDGPGIRFITFFQGCLMRCLYCHNRDTWDT---------------------------------------------HGGKEVTVEDLMKEVVTYRHFMGGVTASGGEAILQAEFVRDWFRACKK----EGIHTCLDTNGFVRDPVIDELLEVTDLVMLDLKQMNDEIHQNLVGVSNHRTLEFAKYLANKNVKVWIRYVVVPGWSDDDDSAHRLGEFTRDMGNVKIELLPYHELGKHKWVAMGEEYKLDGVKPPKKETMERVKGILEQYGHKV
7	SP3	3c8fa	0.294	0.819	4.087	threading_7	--SVIGRIHSFESCGTVDGPGIRFITFFQGCLMRCLYCHNRDTWDTH---------------------------------------------GGKEVTVEDLMKEVVTYRHFMGGVTASGGEAILQAEFVRDWFRACKK----EGIHTCLDTNGFVRRPVIDELLEVTDLVMLDLKQMNDEIHQNLVGVSNHRTLEFAKYLANKNVKVWIRYVVVPGWSDDDDSAHRLGEFTRDMGNVKIELLPYHELGKHKWVAMGEEYKLDGVKPPKKETMER-VKGILEQYGHK
8	SAM-T99	3c8fA	0.284	0.822	7.661	threading_8	--SVIGRIHSFESCGTVDGPGIRFITFFQGCLMRCLYCHNRDTWDTHG---------------------------------------------GKEVTVEDLMKEVVTYRHFGGGVTASGGEAILQAEFVRDWFRACKKE----GIHTCLDTNGFVYDPVIDELLEVTDLVMLDLKQMNDEIHQNLVGVSNHRTLEFAKYLANKNVKVWIRYVVVPGWSDDDDSAHRLGEFTRDMNVEKIELLPYHELGKHKWVAMGEEYKLDGVKPPKKETMERVKGILEQYGHKV
9	MUSTER	3canA	0.214	0.537	1.323	threading_9	-----------------------------------------------------------------------------------------------------------------GGVTFCGGEPLLHPEFLIDILKRCGQQ-----IHRAVDTTLLARKETVDEVR-NCELLLIDLKS-DSTVHQTFCDVPNELILKNIRRVAEADFPYYIRIPLIEGVNADEKNIKLSAEFLASLPRHIINLLPYHDKQ---------TPSEEVQQQCIQILTDYGLKATIGG----
10	SPARKS	3cana	0.212	0.544	2.732	threading_10	----------------------------------------------------------------------------------------------------------------GGGVTFCGGEPLLHPEFLIDILKRCGQ----QGIHRAVDTTLLARKETVDEV-RNCELLLIDLKS-DSTVHQTFCDVPNELILKNIRRVAEADFPYYIRIPLIEGVNADEKNIKLSAEFLASLPREIINLLPYHDKQ---------TPSEEVQQQCIQILTDYGLKATIGG----

Predicted Tertiary Structure


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TM-score=0.596 to 1tv8A SCOP code=c.1.28.3	TM-score=0.591 to 1tv8A SCOP code=c.1.28.3	TM-score=0.596 to 1tv8A SCOP code=c.1.28.3	TM-score=0.593 to 1tv8A SCOP code=c.1.28.3	TM-score=0.601 to 1tv8A SCOP code=c.1.28.3