Template-based Modeling Results for YTFF_ECOLI

Submitted Primary Sequence

>Length 321
MISGVLYALLAGLMWGLIFVGPLIVPEYPAMLQSMGRYLALGLIALPIAWLGRVRLRQLARRDWLTALMLTMMGNLIYYFCLASAIQRTGAPVSTMIIGTLPVVIPVFANLLYSQRDGKLAWGKLAPALICIGIGLACVNIAELNHGLPDFDWARYTSGIVLALVSVVCWAWYALRNARWLRENPDKHPMMWATAQALVTLPVSLIGYLVACYWLNTQTPDFSLPFGPRPLVFISLMVAIAVLCSWVGALCWNVASQLLPTVILGPLIVFETLAGLLYTFLLRQQMPPLMTLSGIALLVIGVVIAVRAKPEKPLTESVSES
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MISGVLYALLAGLMWGLIFVGPLIVPEYPAMLQSMGRYLALGLIALPIAWLGRVRLRQLARRDWLTALMLTMMGNLIYYFCLASAIQRTGAPVSTMIIGTLPVVIPVFANLLYSQRDGKLAWGKLAPALICIGIGLACVNIAELNHGLPDFDWARYTSGIVLALVSVVCWAWYALRNARWLRENPDKHPMMWATAQALVTLPVSLIGYLVACYWLNTQTPDFSLPFGPRPLVFISLMVAIAVLCSWVGALCWNVASQLLPTVILGPLIVFETLAGLLYTFLLRQQMPPLMTLSGIALLVIGVVIAVRAKPEKPLTESVSES
CHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MISGVLYALLAGLMWGLIFVGPLIVPEYPAMLQSMGRYLALGLIALPIAWLGRVRLRQLARRDWLTALMLTMMGNLIYYFCLASAIQRTGAPVSTMIIGTLPVVIPVFANLLYSQRDGKLAWGKLAPALICIGIGLACVNIAELNHGLPDFDWARYTSGIVLALVSVVCWAWYALRNARWLRENPDKHPMMWATAQALVTLPVSLIGYLVACYWLNTQTPDFSLPFGPRPLVFISLMVAIAVLCSWVGALCWNVASQLLPTVILGPLIVFETLAGLLYTFLLRQQMPPLMTLSGIALLVIGVVIAVRAKPEKPLTESVSES
441010000000000000000020023012001000000000000000001011202301131001000000000000000000003322120010000000000100011221343241110200000000000000000120221213121011000000000000000000010020034033321110010100000000000000000112231131112212300000000000000000000000100131011100000000000000000000333011111000000000000000213334222222345
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MISGVLYALLAGLMWGLIFVGPLIVPEYPAMLQSMGRYLALGLIALPIAWLGRVRLRQLARRDWLTALMLTMMGNLIYYFCLASAIQRTGAPVSTMIIGTLPVVIPVFANLLYSQRDGKLAWGKLAPALICIGIGLACVNIAELNHGLPDFDWARYTSGIVLALVSVVCWAWYALRNARWLRENPDKHPMMWATAQALVTLPVSLIGYLVACYWLNTQTPDFSLPFGPRPLVFISLMVAIAVLCSWVGALCWNVASQLLPTVILGPLIVFETLAGLLYTFLLRQQMPPLMTLSGIALLVIGVVIAVRAKPEKPLTESVSES
1	MUSTER	3a0oA	0.097	0.966	0.983	threading_1	AKDPNHCGWAEFYEKSVEPWLERPVMPEPRQMYIDCQEVIYAIRHLAIAGRVLGR------DDLLDASRKWLLAVAAWDTKGATSRAYNDEAGFRVVVALAWGYDWLYDHL---SEDERRTVRSVLLERTREVADHVIAHARIHVFPYDSRSLSAVLTPACIALDEAGEWLDYTVEFLATLYSPWAGTDGGWAEGPHYWMTGMAYLIEAANLIRSYIGYDLYQRPFFQNTGRFPLYTKAPGTRRANFGDDSTLG--DLPGLKLGYNVRQFAGVTGNGHYQWYFDHTEMAFYNYGWWDLNFDDLVYRHDYPQVEAVSPADLP
2	SPARKS	1wmwa	0.119	0.888	0.899	threading_2	IRQALQERLLAR------------LDHPDPLYRDLLQDYPRRLRGLLTVYSALAHGAPLEGLEAATALELFQNWVLVHDDIEDGSEERRGRPMPLALNAGDAMHAEMWGLLAEGLARGLFPVLLEFHEVVRRTAYGQHLDLLWTLGGTFDLRPEDYFRMVAHKAAYYT---AVAPLRLGALLAGKTPPAAYEEGGLRLGTAFQIVDDVLNL-----EGGEAYGKERAGDLYEGLILLRFLEEAPPEERARALALPREAKP----------EAEVGWLLERLLAS------RALAWAKAEAKRLQAEGLALLEAAFQDLPGK
3	PROSPECT2	2bkuB2	0.062	0.907	1.581	threading_3	TDTETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTLAAVIRKSPSSVEPVADMLMGLFFRLLFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKAL-------NQVDSPVSITAVGFIADISAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDALCVANTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLH---------DKPEALFPYVGTIFQFIAQVAE-----------DPQLYSEDATSRAAVGLIGDIAAMFPDGSIKQFYGQDWVIDYI---KRTRSGQLFSQATKSL
4	PPA-I	3zuxA	0.082	0.835	1.290	threading_4	IGKTFSLWAALFAAAAFFAYIPWLLSDFHPKVVIIGVIAQFAIMPATAWCLSKLLN--LPAEIAVGVILVGCCGTASNVMTYLARGNVALSVAVTSVSTLTSPLLTPAIFLMLAGEMLEIQAAGMLMSIVKMVLLPIVLGLIVHKVLGSKTEKLTDALPLVSVAAIVLIIGAVVGASKGKIME----SGLLIFAVVVLHNGIGYLLGFFAAKWTGLP------------YDAQKALTIEVGMQNSGLAAALAAAHFAAAPVVPGALFSVWHNISGSLLATYWAAKA-----------------------------------
5	HHPRED-l	3b5d_A	0.153	0.305	1.639	threading_5	-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------YLGAILAEVIGTTLMKFS--------EG----FT-RL--WP---SVGTIICYCASFWLLAQTLAYIPTGIAYAISGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS------------
6	HHPRED-g	3b5d_A	0.153	0.305	2.249	threading_6	-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------YLGAILAEVIGTTLMKFS--------EG----F-TRL--WP---SVGTIICYCASFWLLAQTLAYIPTGIAYAISGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS------------
7	SP3	1wmwa	0.120	0.935	0.471	threading_7	MVP-----APEAIRQALQERLLARLDHPDPLYRDLLQDYPRGLRGLLTVYSALAHGAPLAGLEAATALELFQNWVLVHDDIEDGSEERRGRPLALNAGDAMHAEMWGLLAEGLARGLFPPEVLLEFHEVVRRTAYGQHLDLLWTLGGTFDLRPEDYFRMVAHKA---AYYTAVAPLRLGALLAGKTPPAAYEEGGLRLGTAFQIVDDVLNL-----EGGEAYGKERAGDLYEGLILLRFLEEPEERARALALLAPREAKPAEVGWLLERLLASRALAWAKAEAK----RLQAEGLALLEA----AFQDLPGKEALDHLRGL
8	SAM-T99	3b61A	0.192	0.324	0.655	threading_8	---------------------------------------------------------------------------------------------------------------------------YLGGAILAEVIGTTLMKFSEGFTRLW------PSVGTIICYCAS-----------------------------------------------------------------FWLLAQTLAYIPTGIAYAIW---------------SGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLSRSTP--------
9	MUSTER	3zuxA	0.091	0.891	0.959	threading_9	IGKTFSLWAALFAAAAFFA--PDTFKWAGPY-----IPWLLGIIMFGMGLTKPSDFDILFKH--PKVVIIGVIAQFAIMPATAWCLSKLNLPVGVILVGCCPTASNVMTYLARGNVA--LSVAVTSVSTLTSPLLTPAIFLMLAGEMLEIQAAGMLMSIVKMVLLPIVLGLIVHKVLGSKTEK-----LTDALPLVSVAAIVLIIGAVVGASK----------GKIMESGLLIFAVVVLHNGIGYLLGFFAAKWTGLPYDAQKALTIEVGNSGLAAALAAAHFAAAPVPGALFSVWHNISGSLLATYWAAKA---------
10	SPARKS	3hfwa	0.117	0.875	0.883	threading_10	KYVAAMVLSAAGDALGYGEKIHRQLGGLDALDVGRWRVSDDTVMHLATAEALVEAGKAPKLTQLYYLLAKHYQDCMEGASVHNAMQLKPGKPNGWRAMRAMCIGLRFPH---HSQLDTLIQVSIESGPTGYLGALASALFTAYAVNSRPPLQWGKGLMELLPEAKKYIVQSGY---FVEENLQHWSYFQTKWENYLKL------------RGILDGESAPTFPESFGVKERDQFYTSL------SYSGWGGS----------------SGHDAPMIAYDAVLADSWKELAHRSDSTAAIAGCWWGVMYGFKPSNYEKLEYR

Predicted Tertiary Structure


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TM-score=0.653 to 1j0nA SCOP code=a.102.3.2	TM-score=0.432 to 1pw4A SCOP code=f.38.1.1	TM-score=0.738 to 1fpsA SCOP code=a.128.1.1	TM-score=0.725 to 3ea5B SCOP code=a.118.1.1	TM-score=0.415 to 2nxpA SCOP code=d.379.1.1