Template-based Modeling Results for YJJM_ECOLI


  Submitted Primary Sequence

>Length 304
MSRSQNLRHNVINQVIDDMARGHIPSPLPSQSALAEMYNISRTTVRHILSHLRECGVLTQVGNDYVIARKPDHDDGFACTTASMSEQNKVFEQAFFTMINQRQLRPGETFSELQLARAAGVSPVVVREYLLKFGRYNLIHSEKRGQWSMKQFDQSYAEQLFELREMLETHSLQHFLNLPDHDPRWLQAKTMLERHRLLRDNIGNSFRMFSQLDRDFHSLLLSAADNIFFDQSLEIISVIFHFHYQWDESDLKQRNIIAVDEHMTILSALICRSDLDATLALRNHLNSAKQSMIRSINENTRYAH
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300
Download Primary Sequence

  Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MSRSQNLRHNVINQVIDDMARGHIPSPLPSQSALAEMYNISRTTVRHILSHLRECGVLTQVGNDYVIARKPDHDDGFACTTASMSEQNKVFEQAFFTMINQRQLRPGETFSELQLARAAGVSPVVVREYLLKFGRYNLIHSEKRGQWSMKQFDQSYAEQLFELREMLETHSLQHFLNLPDHDPRWLQAKTMLERHRLLRDNIGNSFRMFSQLDRDFHSLLLSAADNIFFDQSLEIISVIFHFHYQWDESDLKQRNIIAVDEHMTILSALICRSDLDATLALRNHLNSAKQSMIRSINENTRYAH
CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEECCCCEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300
Download Predicted 3-state Secondary Structure Types

  Predicted Solvent Accessibility

>0-buried to 9-exposed
MSRSQNLRHNVINQVIDDMARGHIPSPLPSQSALAEMYNISRTTVRHILSHLRECGVLTQVGNDYVIARKPDHDDGFACTTASMSEQNKVFEQAFFTMINQRQLRPGETFSELQLARAAGVSPVVVREYLLKFGRYNLIHSEKRGQWSMKQFDQSYAEQLFELREMLETHSLQHFLNLPDHDPRWLQAKTMLERHRLLRDNIGNSFRMFSQLDRDFHSLLLSAADNIFFDQSLEIISVIFHFHYQWDESDLKQRNIIAVDEHMTILSALICRSDLDATLALRNHLNSAKQSMIRSINENTRYAH
5442331122002200210142322231111210031131111101300220252111211223101133232332221222222322310120002001223032132011220041020100101200220152200202231200012013210210010120010100110031233323111021012112213332231131003002100100020031210120022002001000112223233212200210120000022212210030022002101410041032223225
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300
Download Predicted Solvent Accessibility

  Top 10 Templates

RankMethodTemplateIdentityCoverageN-ZscoreThreading AlignmentMSRSQNLRHNVINQVIDDMARGHIPSPLPSQSALAEMYNISRTTVRHILSHLRECGVLTQVGNDYVIARKPDHDDGFACTTASMSEQNKVFEQAFFTMINQRQLRPGETFSELQLARAAGVSPVVVREYLLKFGRYNLIHSEKRGQWSMKQFDQSYAEQLFELREMLETHSLQHFLNLPDHDPRWLQAKTMLERHRLLRDNIGNSFRMFSQLDRDFHSLLLSAADNIFFDQSLEIISVIFHFHYQWDESDLKQRNIIAVDEHMTILSALICRSDLDATLALRNHLNSAKQSMIRSINENTRYAH
1HHPRED-l2di3_A0.1810.7433.149threading_1---SVKAHESVMDWVTEELRSGRIGDHLPSERALSETLGVSRSSLREALRVLEALGTISTATGSGPRSGTIITAAPGQALS-----------LSV---------------------------------TLQL------------------VTNQVGHHDIYETRQLLEGWAALHSSAERGDWDVAEAL-------LEKMDDPSLPLEDFLRFDAEFHVVISKGAENPLISTLMEALRLSVADHTVARARAWRATSARLQKEHRAILAALRAGESTVAATLIKEHIEGYYEETAAAEAL------
2MUSTER3c7jA0.1860.7601.958threading_2--------------------------------------SNARKSDREAFLSSVL-----------------------GNEQPPAHLARTVIEEKLRNAIIDGSLPSGTALRQQELATLFGVSR-PVREALRQLEAQSLLRVETHKGAVVAPLITEDAVDAYALRILLESEALRLSIPLLDADDLAAAASYIEQLEVE-------TDFGQIGRLNRFHLSLYAKTHNKRLRLVEEGLNEEERFLRFNLS---SGLGKLSQDDHWQLLRLAEQKAVEPCVEALQYHLNRGVQAVTQYLQS-QKAGN
3SPARKS2hs5a0.1710.6743.756threading_3------------------------------------------------------------------------------------TSRTTRVAGILRDAIIDGTFRPGARLSEPDICAALDVSRNTVREAFQILIEDRLVAHELNRGVFVRVPTAEDITELYICRRVVECAGVNGF--DPATGDLSRVAEALDLADERYAV---EDWTGVGTADIHFHSALASLNNSNRIDELRSVWNEARLVFH---VDDAHRFHGPYLTRNHEIYDALAAGNTEAAGQLLKTYLEDAEAQILGAYR-------
4PROSPECT23c7jA0.1850.7632.535threading_4SNARKSDREAFLSSVL--------GNEQPPAHLARTV-----------------------------------------------------IEEKLRNAIIDGSLPSGTALRQQELATLFGVSR-PVREALRQLEAQSLLRVETHKGAVVAPLITEDAVDAYALRILLESEALRLSIPLLDADDLAAAASYIEQLEV-------ETDFGQIGRLNRFHLSLYAKTHNKRLRLVEEGLNEEERFLRFN---LSSGLGKLSQDDHWQLLRLAEQKAVEPCVEALQYHLNRGVQAVTQYLQSQKAGNV
5PPA-I2hs5A0.1710.6742.564threading_5------------------------------------------------------------------------------------TSRTTRVAGILRDAIIDGTFRPGARLSEPDICAALDVSRNTVREAFQILIEDRLVAHELNRGVFVRVPTAEDITELYICRRVVECAGVNGF--DPATGDLSRVAEALDLADERYAV---EDWTGVGTADIHFHSALASLNNSNRIDELRSVWNEARLVFHVD---DAHRFHGPYLTRNHEIYDALAAGNTEAAGQLLKTYLEDAEAQILGAYR-------
6HHPRED-l2hs5_A0.1710.6743.428threading_6------------------------------------------------------------------------------------TSRTTRVAGILRDAIIDGTFRPGARLSEPDICAALDVSRNTVREAFQILIEDRLVAHELNRGVFVRVPTAEDITELYICRRVVECAGVNGFD--PATGDLSRVAEALDLADERYA---VEDWTGVGTADIHFHSALASLNNSNRIDEL-RSVWNEARLVFHV--DDAHRFHGPYLTRNHEIYDALAAGNTEAAGQLLKTYLEDAEAQILGAYR-------
7HHPRED-g2hs5_A0.1610.6743.176threading_7------------------------------------------------------------------------------------TSRTTRVAGILRDAIIDGTFRPGARLSEPDICAALDVSRNTVREAFQILIEDRLVAHELNRGVFVRVPTAEDITELYICRRVVECAGVNGFDP--ATGDLSRVAEALDLADERY---AVEDWTGVGTADIHFHSALASLNNSNRIDEL-RSVWNEARLVFHV-DD-AHRFHGPYLTRNHEIYDALAAGNTEAAGQLLKTYLEDAEAQILGAYR-------
8SP32hs5a0.1660.6743.701threading_8------------------------------------------------------------------------------------TSRTTRVAGILRDAIIDGTFRPGARLSEPDICAALDVSRNTVREAFQILIEDRLVAHELNRGVFVRVPTAEDITELYICRRVVECAGVNGFDPATGD--LSRVAEALDLADERYAV---EDWTGVGTADIHFHSALASLNNSNRIDELR-SVWNEARLVFHV--DDAHRFHGPYLTRNHEIYDALAAGNTEAAGQLLKTYLEDAEAQILGAYR-------
9SAM-T993fmsA0.1760.6554.103threading_9-----------------------------------------------------------------------------------VDLVRTKVYN-LLKEILNHELKLGEKLNVRELSEKLGISFTPVRDALLQLATEGLVKVVPRVGFFVTDVDEKFIRETIETR--IEVFCLENYFDKIGSEELLEIKGEIDDVAAS------AAREIFDDSDERLHKLFIRASGNELIISLYEKIWDRIDLVRHLNER-----YVVSNREHKELIERIISGDKEGAIEKLKEHLKNVEAETIKNL--------
10MUSTER2hs5A0.1720.6711.933threading_10------------------------------------------------------------------------------------TSRTTRVAGILRDAIIDGTFRPGARLSEPDICAALDVSRNTVREAFQILIEDRLVAHELNRGVFVRVPTAEDITELYICRRVVECAGVNGF--DPATGDLSRVAEALDLADERYAV---EDWTGVGTADIHFHSALASLNNSNRIDELRSVWNEARLVFHV----DAHRFHGPYLTRNHEIYDALAAGNTEAAGQLLKTYLEDAEAQILGAYR-------

  Predicted Tertiary Structure

Download Model 1 Download Model 2 Download Model 3 Download Model 4 Download Model 5
TM-score=0.599 to 2hs5A
SCOP code=a.4.5.6
TM-score=0.570 to 2hs5A
SCOP code=a.4.5.6
TM-score=0.575 to 2hs5A
SCOP code=a.4.5.6
TM-score=0.830 to 2hs5A
SCOP code=a.4.5.6
TM-score=0.584 to 2hs5A
SCOP code=a.4.5.6