Template-based Modeling Results for YJIM_ECOLI

Submitted Primary Sequence

>Length 383
MSLVTDLPAIFDQFSEARQTGFLTVMDLKERGIPLVGTYCTFMPQEIPMAAGAVVVSLCSTSDETIEEAEKDLPRNLCPLIKSSYGFGKTDKCPYFYFSDLVVGETTCDGKKKMYEYMAEFKPVHVMQLPNSVKDDASRALWKAEMLRLQKTVEERFGHEISEDALRDAIALKNRERRALANFYHLGQLNPPALSGSDILKVVYGATFRFDKEALINELDAMTARVRQQWEEGQRLDPRPRILITGCPIGGAAEKVVRAIEENGGWVVGYENCTGAKATEQCVAETGDVYDALADKYLAIGCSCVSPNDQRLKMLSQMVEEYQVDGVVDVILQACHTYAVESLAIKRHVRQQHNIPYIAIETDYSTSDVGQLSTRVAAFIEML
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MSLVTDLPAIFDQFSEARQTGFLTVMDLKERGIPLVGTYCTFMPQEIPMAAGAVVVSLCSTSDETIEEAEKDLPRNLCPLIKSSYGFGKTDKCPYFYFSDLVVGETTCDGKKKMYEYMAEFKPVHVMQLPNSVKDDASRALWKAEMLRLQKTVEERFGHEISEDALRDAIALKNRERRALANFYHLGQLNPPALSGSDILKVVYGATFRFDKEALINELDAMTARVRQQWEEGQRLDPRPRILITGCPIGGAAEKVVRAIEENGGWVVGYENCTGAKATEQCVAETGDVYDALADKYLAIGCSCVSPNDQRLKMLSQMVEEYQVDGVVDVILQACHTYAVESLAIKRHVRQQHNIPYIAIETDYSTSDVGQLSTRVAAFIEML
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHCCCCEEEECCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MSLVTDLPAIFDQFSEARQTGFLTVMDLKERGIPLVGTYCTFMPQEIPMAAGAVVVSLCSTSDETIEEAEKDLPRNLCPLIKSSYGFGKTDKCPYFYFSDLVVGETTCDGKKKMYEYMAEFKPVHVMQLPNSVKDDASRALWKAEMLRLQKTVEERFGHEISEDALRDAIALKNRERRALANFYHLGQLNPPALSGSDILKVVYGATFRFDKEALINELDAMTARVRQQWEEGQRLDPRPRILITGCPIGGAAEKVVRAIEENGGWVVGYENCTGAKATEQCVAETGDVYDALADKYLAIGCSCVSPNDQRLKMLSQMVEEYQVDGVVDVILQACHTYAVESLAIKRHVRQQHNIPYIAIETDYSTSDVGQLSTRVAAFIEML
45323202200220120132002101313442220000001100200010010000000112321121025200220010010000002233022131010000211020122002002312200001011223332012102210230131014202231233102300111221130011003003322120201100100000102122310121022002202312342342333110000001011203200200231101000111011121133212322100110011002110102021320030012003203020000000200201101011012103333400000010122233221012102101221
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MSLVTDLPAIFDQFSEARQTGFLTVMDLKERGIPLVGTYCTFMPQEIPMAAGAVVVSLCSTSDETIEEAEKDLPRNLCPLIKSSYGFGKTDKCPYFYFSDLVVGETTCDGKKKMYEYMAEFKPVHVMQLPNSVKDDASRALWKAEMLRLQKTVEERFGHEISEDALRDAIALKNRERRALANFYHLGQLNPPALSGSDILKVVYGATFRFDKEALINELDAMTARVRQQWEEGQRLDPRPRILITGCPIGGAAEKVVRAIEENGGWVVGYENCTGAKATEQCVAETGDVYDALADKYLAIGCSCVSPNDQRLKMLSQMVEEYQVDGVVDVILQACHTYAVESLAIKRHVRQQHNIPYIAIETDYSTSDVGQLSTRVAAFIEML
1	MUSTER	3o3mB	0.199	0.956	2.825	threading_1	------MEAILSKMKEVVENPNAAVKKYKSEGKKAIGCFPVYCPEEIIHAAGMLPVGIWGGQTE-LDLAKQYFPAFACSIMQSCLEYGLKGAYDELSG---VIIPGMCDTLICLGQNWKSAIKYISLVHPQNRKLEAGVKYLISEYKGVKRELEEICGYEIEEAKIHESIEVYNEHRKTMRDFVEVAYKHSNTIKPSIRSLVIKSG-FFMRKEEHTELVKDLIAKLNAM---PEEVCSGKKVLLTGILADS--KDILDILEDNNISVVADDLAQETRQFRTDVPAGDDALERLARQWSNIESLAYDPKKKRGSLIVDEVKKKDIDGVIFCMMKFCDPEEYDYPLVRKDIEDS-GIPTLYVEIDQQTQNNEQARTRIQTFAEMM
2	SPARKS	3o3mb	0.202	0.956	7.121	threading_2	------MEAILSKMKEVVENPNAAVKKYKSEGKKAIGCFPVYCPEEIIHAAGMLPVGIWGGQTE-LDLAKQYFPAFACSIMQSCLEYGLKGAYDELSG---VIIPGMCDTLICLGQNWKSAVPYISLVHPQNRKLEAGVKYLISEYKGVKRELEEICGYEIEEAKIHESIEVYNEHRKTMRDFVEVAYKHSNTIKPSIRSLVIK-SGFFMRKEEHTELVKDLIAKLNA---MPEEVCSGKKVLLTGILA--DSKDILDILEDNNISVVADDLAQETRQFRTDVPAGDDALERLARQWSNIESLAYDPKKKRGSLIVDEVKKKDIDGVIFCMMKFCDPEEYDYPLVRKDIE-DSGIPTLYVEIDQQTQNNEQARTRIQTFAEMM
3	PROSPECT2	3o3mB	0.202	0.956	4.220	threading_3	M------EAILSKMKEVVENPNAAVKKYSETGKKAIGCFPVYCPEEIIHAAGMLPVGIWGGQTE-LDLAKQYFPAFACSIMQSCLEYGLKGAYDELSG---VIIPGMCDTLICLGQNWKSHIKYISLVHPQNRKLEAGVKYLISEYKGVKRELEEICGYEIEEAKIHESIEVYNEHRKTMRDFVEVAYKHSNTIKPSIRSLVIKSG-FFMRKEEHTELVKDLIAKLNA---MPEEVCSGKKVLLTGILADS--KDILDILEDNNISVVADDLAQETRQFRTDVPAGDDALERLARQWSNIESLAYDPKKKRGSLIVDEVKKKDIDGVIFCMMKFCDPEEYDYPLVRKDI-EDSGIPTLYVEIDQQTQNNEQARTRIQTFAEMM
4	PPA-I	3o3mB	0.202	0.956	4.398	threading_4	------MEAILSKMKEVVENPNAAVKKYKSEGKKAIGCFPVYCPEEIIHAAGMLPVGIWGGQTE-LDLAKQYFPAFACSIMQSCLEYGLKGAYDELSG---VIIPGMCDTLICLGQNWKSAVPYISLVHPQNRKLEAGVKYLISEYKGVKRELEEICGYEIEEAKIHESIEVYNEHRKTMRDFVEVAYKHSNTIKPSIRSLVIKSG-FFMRKEEHTELVKDLIAKLNAM---PEEVCSGKKVLLTGILADS--KDILDILEDNNISVVADDLAQETRQFRTDVPAGDDALERLARQWSNIESLAYDPKKKRGSLIVDEVKKKDIDGVIFCMMKFCDPEEYDYPLVRKDIED-SGIPTLYVEIDQQTQNNEQARTRIQTFAEMM
5	HHPRED-l	3o3m_B	0.211	0.953	9.316	threading_5	------MEAILSKMKEVVENPNAAVKKYKSEGKKAIGCFPVYCPEEIIHAAGMLPVGIWGG-QTELDLAKQYFPAFACSIMQSCLEYGLKGAYD---ELSGVIIPGMCDTLICLGQNWKSHIKYISLVHPQNRKLEAGVKYLISEYKGVKRELEEICGYEIEEAKIHESIEVYNEHRKTMRDFVEVAYKHSNTIKPSIRSLVIKSGFF-MRKEEHTELVKDLIAKLNAMPEEV---CSGKKVLLTGILADSK--DILDILEDNNISVVADDLAQETRQFRTDVPAGDDALERLARQWSNIGCSLADPKKKRGSLIVDEVKKKDIDGVIFCMMKFCDPEEYDYPLVRKDI-EDSGIPTLYVEIDQQTQNNEQARTRIQTFAEM-
6	HHPRED-g	3o3m_B	0.208	0.956	7.411	threading_6	------MEAILSKMKEVVENPNAAVKKYKSEGKKAIGCFPVYCPEEIIHAAGMLPVGIWGG-QTELDLAKQYFPAFACSIMQSCLEYGLKGAYD---ELSGVIIPGMCDTLICLGQNWKSAIKYISLVHPQNRKLEAGVKYLISEYKGVKRELEEICGYEIEEAKIHESIEVYNEHRKTMRDFVEVAYKHSNTIKPSIRSLVIKSGFF-MRKEEHTELVKDLIAKLNAMPEEV---CSGKKVLLTGILADS--KDILDILEDNNISVVADDLAQETRQFRTDVPAGDDALERLARQWSNEGCSLAYPKKKRGSLIVDEVKKKDIDGVIFCMMKFCDPEEYDYPLVRKDI-EDSGIPTLYVEIDQQTQNNEQARTRIQTFAEMM
7	SP3	3o3mb	0.213	0.956	7.601	threading_7	------MEAILSKMKEVVENPNAAVKKYKSEGKKAIGCFPVYCPEEIIHAAGMLPVGIWGGQTE-LDLAKQYFPAFACSIMQSCLEYGLKGAYDELSG---VIIPGMCDTLICLGQNWKSAIKYISLVHPQNRKLEAGVKYLISEYKGVKRELEEICGYEIEEAKIHESIEVYNEHRKTMRDFVEVAYKHSNTIKPSIRSLVIK-SGFFMRKEEHTELVKDLIAKLNAMPEEVC---SGKKVLLTGILA--DSKDILDILEDNNISVVADDLAQETRQFRTDVPAGDDALERLARQWSNIGCSLADPKKKRGSLIVDEVKKKDIDGVIFCMMKFCDPEEYDYPLVRKDIE-DSGIPTLYVEIDQQTQNNEQARTRIQTFAEMM
8	SAM-T99	3o3mB	0.205	0.956	7.494	threading_8	------MEAILSKMKEVVENPNAAVKKYKSEGKKAIGCFPVYCPEEIIHAAGMLPVGIWG-GQTELDLAKQYFPAFACSIMQSCLEYGLKGA---YDELSGVIIPGMCDTLICLGQNWKSHIKYISLVHPQNRKLEAGVKYLISEYKGVKRELEEICGYEIEEAKIHESIEVYNEHRKTMRDFVEVAYKHSNTIKPSIRSLVIKSGFFM-RKEEHTELVKDLIAKLNAM---PEEVCSGKKVLLTGILADSK--DILDILEDNNISVVADDLAQETRQFRTDVPAGDDALERLARQWSNIGCSLYDPKKKRGSLIVDEVKKKDIDGVIFCMMKFCDPEEYDYPLVRKDI-EDSGIPTLYVEIDQQTQNNEQARTRIQTFAEMM
9	MUSTER	3o3mA	0.163	0.961	2.513	threading_9	-------KEARVVINDLLAEQYANAFKAKEEGRP-VGWSTSVFPQELAEVFDLNVLYPEKGSLELCEIAESKYSIDLCAYARTNFGLLENGGCEALDMPFLLCCNNICNQVIKWYENISREIPLIMIDTTFNNETQSRIDYIKAQFEEAIKQLEIISGKKFDPKKFEEVMKISAENGRLWKYSMSLPASSPSPMNGFDLFTYMAVIVCARGKKETTEAFKLLIEELEDNMKTGKSSEEKYRIMMEGIPCWPYIGYKMKTLAKFGVNMTGSVYPHAW-----ALQYEVNDLDGMAVAYSTMFNNV--NLDRMTKYRVDSLVEGKCDGAFYHMNRSCKLMSLIQYEMQRRAAEETGLPYAGFDGDPRAFTNAQFETRIQGLVEVM
10	SPARKS	3o3ma	0.163	0.961	6.145	threading_10	-------KEARVVINDLLAEQYANAFKAKEEGRP-VGWSTSVFPQELAEVFDLNVLYPKKGSLELCEIAESGYSIDLCAYARTNFGLLENGGCEALDMPFLLCCNNICNQVIKWYENISRDIPLIMIDTTFNNETQSRIDYIKAQFEEAIKQLEIISGKKFDPKKFEEVMKISAENGRLWKYSMSLPASSPSPMNGFDLFTYMAVIVCARGKKETTEAFKLLIEELEDNMKTGKSSEEKYRIMMEGIPCWPYIGYKMKTLAKFGVNMTGSVYPHAW-----ALQYEVNDLDGMAVAYSTMFNNV--NLDRMTKYRVDSLVEGKCDGAFYHMNRSCKLMSLIQYEMQRRAAEETGLPYAGFDGDQADPTNAQFETRIQGLVEVM

Predicted Tertiary Structure


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TM-score=0.474 to 2r2vA SCOP code=h.1.3.1	TM-score=0.474 to 2r2vA SCOP code=h.1.3.1	TM-score=0.474 to 2r2vA SCOP code=h.1.3.1	TM-score=0.475 to 2r2vA SCOP code=h.1.3.1	TM-score=0.476 to 2r2vA SCOP code=h.1.3.1