Template-based Modeling Results for YJHU_ECOLI

Submitted Primary Sequence

>Length 328
MDRDQTNSSLFNDDPVLHATWLYYQEGKSQTEVAAIMGVSRVTVVKYLQTARENGLVHINLDVNVFGSIDAALQIRDKFNLQRVIIVPDGEHAGKRDDTKLMRTRLSRAGGMYLNQVIENGDVLGVAWGRTIHQMSKTMTPKSCKNVTVIQMLGSMPSQPDLTIIESSSQIAYKLSGRVASLHVPAVVSSARLAMELQAEPIIRSNFDVLTRCTKAFFVVGNALDENPLIRVGVLNKKEMQTYRDLGAVGVICGRFYDKEGMPVVADVDQRILGISLAQLRQIERKIFLAGGERGYDATLGALLGGYVTDLIVDEGTAEFLLACELPH
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MDRDQTNSSLFNDDPVLHATWLYYQEGKSQTEVAAIMGVSRVTVVKYLQTARENGLVHINLDVNVFGSIDAALQIRDKFNLQRVIIVPDGEHAGKRDDTKLMRTRLSRAGGMYLNQVIENGDVLGVAWGRTIHQMSKTMTPKSCKNVTVIQMLGSMPSQPDLTIIESSSQIAYKLSGRVASLHVPAVVSSARLAMELQAEPIIRSNFDVLTRCTKAFFVVGNALDENPLIRVGVLNKKEMQTYRDLGAVGVICGRFYDKEGMPVVADVDQRILGISLAQLRQIERKIFLAGGERGYDATLGALLGGYVTDLIVDEGTAEFLLACELPH
CCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHCCEEEEEECCHHCCCHHHHHHHHHCHHHHHHHHHHHHCCEEEEEECCCCCCCCHHHHCCCCHHHHHHHHHCCCHHHHHHHHCCCCCCEECCCCCCCCCCCCHHHHCCCCEEEEEECCHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MDRDQTNSSLFNDDPVLHATWLYYQEGKSQTEVAAIMGVSRVTVVKYLQTARENGLVHINLDVNVFGSIDAALQIRDKFNLQRVIIVPDGEHAGKRDDTKLMRTRLSRAGGMYLNQVIENGDVLGVAWGRTIHQMSKTMTPKSCKNVTVIQMLGSMPSQPDLTIIESSSQIAYKLSGRVASLHVPAVVSSARLAMELQAEPIIRSNFDVLTRCTKAFFVVGNALDENPLIRVGVLNKKEMQTYRDLGAVGVICGRFYDKEGMPVVADVDQRILGISLAQLRQIERKIFLAGGERGYDATLGALLGGYVTDLIVDEGTAEFLLACELPH
5543323322221100010001012222202200320201211013002103421001010212222122002101320402100001223322443223101210020002002310331100000102001200320223213302101011112232201012000100240312000010011022230021022222021002002401000000010233121021111333102102321000100010013312101131323101021220340211000011330010000002021010000011002111323234
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MDRDQTNSSLFNDDPVLHATWLYYQEGKSQTEVAAIMGVSRVTVVKYLQTARENGLVHINLDVNVFGSIDAALQIRDKFNLQRVIIVPDGEHAGKRDDTKLMRTRLSRAGGMYLNQVIENGDVLGVAWGRTIHQMSKTMTPKSCKNVTVIQMLGSMPSQPDLTIIESSSQIAYKLSGRVASLHVPAVVSSARLAMELQAEPIIRSNFDVLTRCTKAFFVVGNALDENPLIRVGVLNKKEMQTYRDLGAVGVICGRFYDKEGMPVVADVDQRILGISLAQLRQIERKIFLAGGERGYDATLGALLGGYVTDLIVDEGTAEFLLACELPH
1	MUSTER	2w48B	0.219	0.945	2.772	threading_1	--------NSDDIRLIVKIAQLYYEQDMTQAQIARELGIYRTTISRLLKRGREQGIVTIAINYDYNENLWLEQQLKQKFGLKEAVVASS-----DGLLEEEQLSAMGQHGALLVDRLLEPGDIIGFSWGRAVRSLVENLPQRSSRQVICVPIIGGPSGKLRYHVNTLTYGAAARLKAESHLADFPALLDNPLIRNGIMQSQHFKTISSYWDSLDVALVGIGSPAIRDGANWHAFYGSEESDDLNARHVAGDICSRFYDINGGLVDTNMSEKTLSIEMAKLRQARYSIGIAMGEEKYSGILGALHGRYINCLVTNRETAELLLK-----
2	SPARKS	2w48a	0.226	0.930	5.730	threading_2	---------SDDIRLIVKIAQLYYEQDMTQAQIARELGIYRTTISRLLKRGREQGIVTIAINYDYNENLWLEQQLKQKFGLKEAVVASSEE---------EQLSAMGQHGALLVDRLLEPGDIIGFSWGRAVRSLVENLPQRSQRQVICVPIIGGPSGKLEYHVNTLTYGAAARLKAESHLADFPALLDNPLIRNGIMQSQHFKTISSYWDSLDVALVGIGSPAIRDGANWHAFYGSEESDDLNARHVAGDICSRFYDINGGLVDTNMSEKTLSIEMAKLRQARYSIGIAMGEEKYSGILGALHGRYINCLVTNRETAELLLK-----
3	PROSPECT2	2w48A	0.226	0.930	4.112	threading_3	SD---------DIRLIVKIAQLYYEQDMTQAQIARELGIYRTTISRLLKRGREQGIVTIAINYDYNENLWLEQQLKQKFGLKEAVVASSEE---------EQLSAMGQHGALLVDRLLEPGDIIGFSWGRAVRSLVENLPQRQSRQVICVPIIGGPSGKLEYHVNTLTYGAAARLKAESHLADFPALLDNPLIRNGIMQSQHFKTISSYWDSLDVALVGIGSPAIRDGANWHAFYGSEESDDLNARHVAGDICSRFYDINGGLVDTNMSEKTLSIEMAKLRQARYSIGIAMGEEKYSGILGALHGRYINCLVTNRETAELLL-----K
4	PPA-I	2w48B	0.219	0.945	3.551	threading_4	--------NSDDIRLIVKIAQLYYEQDMTQAQIARELGIYRTTISRLLKRGREQGIVTIAINYDYNENLWLEQQLKQKFGLKEAVVAS-----SDGLLEEEQLSAMGQHGALLVDRLLEPGDIIGFSWGRAVRSLVENLPQRSSRQVICVPIIGGPSGKLEYHVNTLTYGAAARLKAESHLADFPALLDNPLIRNGIMQSQHFKTISSYWDSLDVALVGIGSPAIRDGANWHAFYGSEESDDLNARHVAGDICSRFYDINGGLVDTNMSEKTLSIEMAKLRQARYSIGIAMGEEKYSGILGALHGRYINCLVTNRETAELLLK-----
5	HHPRED-l	2w48_A	0.233	0.915	4.986	threading_5	---------SDDIRLIVKIAQLYYEQDMTQAQIARELGIYRTTISRLLKRGREQGIVTIAINYDYNENLWLEQQLKQKFGLKEAVVASS---------EEEQLSAMGQHGALLVDRLLEPGDIIGFSWGRAVRSLVENLPQRQSRQVICVPIIGGPSKESRYHVNTLTYGAAARLKAESHLADFPALLDNPLIRNGIMQSQHFKTISSYWDSLDVALVGIG--SP---AIRDGFYGSEESDDLNARHVAGDICSRFYDINGGLVDTNMSEKTLSIEMAKLRQARYSIGIAMGEEKYSGILGALHGRYINCLVTNRETAELLLK-----
6	HHPRED-g	2w48_A	0.237	0.915	4.366	threading_6	---------SDDIRLIVKIAQLYYEQDMTQAQIARELGIYRTTISRLLKRGREQGIVTIAINYDYNENLWLEQQLKQKFGLKEAVVASS---------EEEQLSAMGQHGALLVDRLLEPGDIIGFSWGRAVRSLVENLPQRQSRQVICVPIIGGPSKESRYHVNTLTYGAAARLKAESHLADFPALLDNPLIRNGIMQSQHFKTISSYWDSLDVALVGIG-----SPAIRDGFYGSEESDDLNARHVAGDICSRFYDINGGLVDTNMSEKTLSIEMAKLRQARYSIGIAMGEEKYSGILGALHGRYINCLVTNRETAELLLK-----
7	SP3	2w48a	0.226	0.930	5.934	threading_7	---------SDDIRLIVKIAQLYYEQDMTQAQIARELGIYRTTISRLLKRGREQGIVTIAINYDYNENLWLEQQLKQKFGLKEAVVASSEE---------EQLSAMGQHGALLVDRLLEPGDIIGFSWGRAVRSLVENLPQRSSRQVICVPIIGGPSGKLEYHVNTLTYGAAARLKAESHLADFPALLDNPLIRNGIMQSQHFKTISSYWDSLDVALVGIGSPAIRDGANWHAFYGSEESDDLNARHVAGDICSRFYDINGGLVDTNMSEKTLSIEMAKLRQARYSIGIAMGEEKYSGILGALHGRYINCLVTNRETAELLLK-----
8	SAM-T99	2w48B	0.216	0.945	6.174	threading_8	--------NSDDIRLIVKIAQLYYEQDMTQAQIARELGIYRTTISRLLKRGREQGIVTIAINYDYNENLWLEQQLKQKFGLKEAVVASSDGLLEEE-----QLSAMGQHGALLVDRLLEPGDIIGFSWGRAVRSLVENLPQRQSRQVICVPIIGGPSGESRYHVNTLTYGAAARLKAESHLADFPALLDNPLIRNGIMQSQHFKTISSYWDSLDVALVGIGSPAIRDGANWHAFYGSEESDDLNARHVAGDICSRFYDINGGLVDTNMSEKTLSIEMAKLRQARYSIGIAMGEEKYSGILGALHGRYINCLVTNRETAELLLK-----
9	MUSTER	2gnpA	0.195	0.784	2.060	threading_9	---------------------------------------------------------------NFDTNFKLENYVKEKYSLESLEIIPNEFDD----TPTILSERISQVAAGVLRNLI-DDNKIGFSWGKSLSNLVDLIHSKSVRNVHFYPLAGGPSHIHAKYHVNTLIYESRKFHGECT-FNATIVQENKLLADGILQSRYFENLKNSWKDLDIAVVGIGDFSNKGKHQW-LDLTEDDFKELTKVKTVGEICCRFFDSKGKEVYENLQERTIAISLEDLKNIPQSLAVAYGDTKVSSILSVLRANLVNHLITDKNTILKVLEEDGD-
10	SPARKS	3bxea	0.215	0.753	4.456	threading_10	------------------------------------------------------------------GLTLLEKTLKERLNLKDAIIVS-----GDSDQSPWVKKEMGRAAVACMKKRFSGKNIVAVTGGTTIEAVAEMMTPDKNRELLFVPARGGLGEDVKNQANTICAHMAEKASGTYRLLFVPGQL-SQGAYSSIIEEPSVKEVLNTIKSASMLVHGIGEAKT---MAQRRNTPLEDLKKIDDNDAVTEAFGYYFNADGEVVH---KVHSVGMQLDDIDAIPDIIAVAGGSSKAEAIEAYFKKPRNTVLVTDEGAAKKLLRDE---

Predicted Tertiary Structure


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TM-score=0.797 to 2gnpA SCOP code=c.124.1.8	TM-score=0.795 to 2gnpA SCOP code=c.124.1.8	TM-score=0.799 to 2gnpA SCOP code=c.124.1.8	TM-score=0.799 to 2gnpA SCOP code=c.124.1.8	TM-score=0.800 to 2gnpA SCOP code=c.124.1.8