Template-based Modeling Results for YJHP_ECOLI


  Submitted Primary Sequence

>Length 248
MDIPRIFTISESEHRIHNPFTEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQACGVSSTSDFLTLPGLVGAFDDLGYDVVEMVLADQEGWDRYEAAKWLTMRRWLEANPDDDFAAEVRAELNIAPKRYVTYARECFGWGVFALIAR
12345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240
Download Primary Sequence

  Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MDIPRIFTISESEHRIHNPFTEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQACGVSSTSDFLTLPGLVGAFDDLGYDVVEMVLADQEGWDRYEAAKWLTMRRWLEANPDDDFAAEVRAELNIAPKRYVTYARECFGWGVFALIAR
CCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCHHHCCCCCCCCEEEEECCHHHCCCHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEEEEC
12345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240
Download Predicted 3-state Secondary Structure Types

  Predicted Solvent Accessibility

>0-buried to 9-exposed
MDIPRIFTISESEHRIHNPFTEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQACGVSSTSDFLTLPGLVGAFDDLGYDVVEMVLADQEGWDRYEAAKWLTMRRWLEANPDDDFAAEVRAELNIAPKRYVTYARECFGWGVFALIAR
44331012002232421220122101100410403312100000000020001003212020000100220011013103522123102000010111123330000000100200000110020003003320000001001242222320021011111121010100010024011100100102230012000010100120033123331121012102200310010013000000000113
12345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240
Download Predicted Solvent Accessibility

  Top 10 Templates

RankMethodTemplateIdentityCoverageN-ZscoreThreading AlignmentMDIPRIFTISESEHRIHNPFTEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQACGVSSTSDFLTLPGLVGAFDDLGYDVVEMVLADQEGWDRYEAAKWLTMRRWLEANPDDDFAAEVRAELNIAPKRYVTYARECFGWGVFALIAR
1MUSTER3ha3A0.1290.9682.345threading_1QDPTRTYSCAYFEPPTLEEAQYAKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF--AEPVDRIVSIEAFEHFGNYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAIKFIVTEIFPGGRLPSTEMMVEHGEKAGFTVP-----EPLSLRPHYIKTLRIWGDTLQSNKDK-AIEVTSEEVYNRYMKYLRGCEHYFTDDCSLVTYL
2SPARKS1kpga0.1530.9482.808threading_2LDPTQTYSCAYFERDTLQEAQIAKIDLALGKLGLQPGT-LLDVGCGWGAT--RAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQF--DEPVDRIVSIGAFEHFGRYDAFFSLAHRLLPADGVLLHTITGLHPKEIHFLKFIVTEIFPGGRLPSI-PVQECASANGFTVTRVQS-----LQPHYAKTLDLWSAALQANKGQ-AIALQSEEVYERYK-YLTGCAEFRIIDVNQFTCQ
3PROSPECT23f4kA0.1750.9923.174threading_3FDFSFICNYFKLLKRQGPGSPEATRKAVSFINELTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLFQNEELDLIWSEGAIYNIG-FERGMNEWSKYLKKGGFIAVSEASWFTSERPAEIEDFW-MDAYPEISVIPTCIDKMERAGYTPTAHFILPENCWTEHYFAPQDEVRETFMKEHAGNKTAMDFMKGQQYERSLYSKYKDYYGYVFYIGQKR
4PPA-I3ha3A0.1250.9682.734threading_4QDPTRTYSCAYFEPPTLEEAQYAKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF--AEPVDRIVSIEAFEHFGNYDDFFKRCFNIMPADGRMTVQSSVSYHPYERFIKFIVTEIFPGGRLPSTEMMVEHGEKAGF-----TVPEPLSLRPHYIKTLRIWGDTLQSNKDK-AIEVTSEEVYNRYMKYLRGCEHYFTDDCSLVTYL
5HHPRED-l1nkv_A1.0000.9602.351threading_5---PRIFTISESEHRIHNPFTEEKYATLGRVLR-KPGTRILDLGSGSGE-LCTWARDHGITGTGID-SSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGI-LIGEPYWRQLPATEEIAQACGVSSTSDFLTLPGLVGAFDDLGYDVVE-VLADQEGWDRYEAAKWLT-RRWLEANPDDDFAAEVRAELNIAPKRYVTYARECFGWGVFALIA-
6HHPRED-g2fk8_A0.1290.9683.464threading_6QDPTRTYSCAYFEELTLEEAQYAKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF--AEPVDRIVSIEAFEHFGNYDDFFKRCFNIMPADGRMTVQSSVSYHPYERFIKFIVTEIFPGGRLPSTEMMVEHGEKAGFTVP-----EPLSLRPHYIKTLRIWGDTLQSNKDKAIEV-TSEEVYNRYMKYLRGCEHYFTDEMLDCTYL
7SP31kpga0.1450.9443.291threading_7LDPTQTYSCAYFERDTLQEAQIAKIDLALGKLGLQPG-TLLDVGCGWGAT--RAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQF--DEPVDRIVSIGAFEHFGRYDAFFSLAHRLLPADGV-LLHTITGLHPKEIFLKFIVTEIFPGGRLPSI-PVQECASANGFTVTRVQS-----LQPHYAKTLDLWSAALQANKGQ-AIALQSEEVYERY-KYLTGCAEFRIIDVNQFTCQ
8SAM-T991nkvC0.9400.9482.484threading_8-DIPRIFTISESEHRIHNPFTEEKYATLGRVLR-KPGTRILDLGSGSGELCTWARDH-GITGTGID-SSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANEKCDVAACVGATWIAG----GEELLAQSLKPGGILIG-EPYWRQLPATEEIAQACGVSSTSDFLTLPGLVGAFDDLGYDVVEVL-ADQEGWDRYEAAKWLT-RRWLEANPDDDFAAEVRAELNIAPKRYVTYARECFGWGVFALI--
9MUSTER3hemA0.1500.9682.209threading_9LDPSMTYSCAYFERMTLEEAQYAKRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF--DEPVDRIVSLGAFEHAGRYDTFFKKFYNLTPDDGRMLLHTITIPDGLTSPIKFILTEIFPGGRLPRISQVDYYSSNAGWKVERYHR-----IGANYVPTLNAWADALQAHKDE-AIALKGQETCDIYMHYLRGCSDLFRDDVCQFTLV
10SPARKS3busa0.1770.9562.572threading_10WGENLHFGYWEDAGASVDDATDRLTDEIA-LLDVRSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLANRVTFSYADADLPFEDASFDAVWALESLHHP-DRGRALREA-RVLRPGGTVAIADFVLLAPVEGKKEAVDAFRAGGGSLGGIDEYESDVRQAELVVTSTVD-----ISAQARPSLVKTAEAFENARSQVEPFG-AEGLDRI--ATFRGLAEVPEAGYVLIGAR

  Predicted Tertiary Structure

Download Model 1 Download Model 2 Download Model 3 Download Model 4 Download Model 5
TM-score=0.854 to 1kpgA
TM-score=0.714 to native
SCOP code=c.66.1.18		 TM-score=0.852 to 1kpgA
TM-score=0.722 to native
SCOP code=c.66.1.18		 TM-score=0.883 to 1kpgA
TM-score=0.726 to native
SCOP code=c.66.1.18		 TM-score=0.748 to 2o57A
TM-score=0.830 to native
SCOP code=c.66.1.18		 TM-score=0.856 to 1kpgA
TM-score=0.718 to native
SCOP code=c.66.1.18

  Experimental Structure

Download 1nkvA
SCOP code=c.66.1.21