Template-based Modeling Results for YJGR_ECOLI

Submitted Primary Sequence

>Length 500
MSEPLLIARTPDTELFLLPGMANRHGLITGATGTGKTVTLQKLAESLSEIGVPVFMADVKGDLTGVAQAGTVSEKLLARLKNIGVNDWQPHANPVVVWDIFGEKGHPVRATVSDLGPLLLARLLNLNDVQSGVLNIIFRIADDQGLLLLDFKDLRAITQYIGDNAKSFQNQYGNISSASVGAIQRGLLSLEQQGAAHFFGEPMLDIKDWMRTDANGKGVINILSAEKLYQMPKLYAASLLWMLSELYEQLPEAGDLEKPKLVFFFDEAHLLFNDAPQVLLDKIEQVIRLIRSKGVGVWFVSQNPSDIPDNVLGQLGNRVQHALRAFTPKDQKAVKAAAQTMRANPAFDTEKAIQELGTGEALISFLDAKGSPSVVERAMVIAPCSRMGPVTEDERNGLINHSPVYGKYEDEVDRESAYEMLQKGFQASTEQQNNPPAKGKEVAVDDGILGGLKDILFGTTGPRGGKKDGVVQTMAKSAARQVTNQIVRGMLGSLLGGRRR
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MSEPLLIARTPDTELFLLPGMANRHGLITGATGTGKTVTLQKLAESLSEIGVPVFMADVKGDLTGVAQAGTVSEKLLARLKNIGVNDWQPHANPVVVWDIFGEKGHPVRATVSDLGPLLLARLLNLNDVQSGVLNIIFRIADDQGLLLLDFKDLRAITQYIGDNAKSFQNQYGNISSASVGAIQRGLLSLEQQGAAHFFGEPMLDIKDWMRTDANGKGVINILSAEKLYQMPKLYAASLLWMLSELYEQLPEAGDLEKPKLVFFFDEAHLLFNDAPQVLLDKIEQVIRLIRSKGVGVWFVSQNPSDIPDNVLGQLGNRVQHALRAFTPKDQKAVKAAAQTMRANPAFDTEKAIQELGTGEALISFLDAKGSPSVVERAMVIAPCSRMGPVTEDERNGLINHSPVYGKYEDEVDRESAYEMLQKGFQASTEQQNNPPAKGKEVAVDDGILGGLKDILFGTTGPRGGKKDGVVQTMAKSAARQVTNQIVRGMLGSLLGGRRR
CCCCEEEECCCCCCEEEEHHHHHHCEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCEEEEHHHHCHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHCCCCCCCCHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCEEEEEEECCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHCCCHHHHCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MSEPLLIARTPDTELFLLPGMANRHGLITGATGTGKTVTLQKLAESLSEIGVPVFMADVKGDLTGVAQAGTVSEKLLARLKNIGVNDWQPHANPVVVWDIFGEKGHPVRATVSDLGPLLLARLLNLNDVQSGVLNIIFRIADDQGLLLLDFKDLRAITQYIGDNAKSFQNQYGNISSASVGAIQRGLLSLEQQGAAHFFGEPMLDIKDWMRTDANGKGVINILSAEKLYQMPKLYAASLLWMLSELYEQLPEAGDLEKPKLVFFFDEAHLLFNDAPQVLLDKIEQVIRLIRSKGVGVWFVSQNPSDIPDNVLGQLGNRVQHALRAFTPKDQKAVKAAAQTMRANPAFDTEKAIQELGTGEALISFLDAKGSPSVVERAMVIAPCSRMGPVTEDERNGLINHSPVYGKYEDEVDRESAYEMLQKGFQASTEQQNNPPAKGKEVAVDDGILGGLKDILFGTTGPRGGKKDGVVQTMAKSAARQVTNQIVRGMLGSLLGGRRR
54320000223312000101001200000002120111002200200132201000001302010013222223301210330213322131010000102134212020002200110002012013100100200020023221220103102200210131032013312312211010011001102221022011222020320122223230000000034122212000000010012002202422323312000002102200332232013102200321233000000011123302330011001100100311233023002100421323222301320331220100000123421101011021112214213123310100043121013123322241022103422322233333332423322233222222332221222242132210021002200230112001000220222443
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MSEPLLIARTPDTELFLLPGMANRHGLITGATGTGKTVTLQKLAESLSEIGVPVFMADVKGDLTGVAQAGTVSEKLLARLKNIGVNDWQPHANPVVVWDIFGEKGHPVRATVSDLGPLLLARLLNLNDVQSGVLNIIFRIADDQGLLLLDFKDLRAITQYIGDNAKSFQNQYGNISSASVGAIQRGLLSLEQQGAAHFFGEPMLDIKDWMRTDANGKGVINILSAEKLYQMPKLYAASLLWMLSELYEQLPEAGDLEKPKLVFFFDEAHLLFNDAPQVLLDKIEQVIRLIRSKGVGVWFVSQNPSDIPDNVLGQLGNRVQHALRAFTPKDQKAVKAAAQTMRANPAFDTEKAIQELGTGEALISFLDAKGSPSVVERAMVIAPCSRMGPVTEDERNGLINHSPVYGKYEDEVDRESAYEMLQKGFQASTEQQNNPPAKGKEVAVDDGILGGLKDILFGTTGPRGGKKDGVVQTMAKSAARQVTNQIVRGMLGSLLGGRRR
1	MUSTER	1e9sF	0.169	0.722	1.024	threading_1	KAKQVTVAG-----VPMPRDAEPRHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDPNGDMLSKFGRDKD----------IILNPYDQRTKGWSFFNEIRNDYDWQRYALSVVPRGKTDEAEEWASYGRLLLRETAKKLALIGTP--SMRELFHWTTIA--TFDDLRGFLEGTSNEASKALTSARFVLSDKLPEHVTMPDGFSIRSWLE-DPNGGNLFITWREDMGPALRPLISAWVDVVCTSILS----LPEEPKRRLWLFIDELASLEK------LASLADALTKGRKAGLRVVAGLQSTSQLDQTLRASFRSLVVLGGSRTDPKTNEDMSLSLGEHGRALERVMPAEIANLPDLTAYVGF--AGNRPIAKVPLEIKQFANRQPAFVEG-----------------------------------------------------------------------------------------------------------
2	PROSPECT2	1w36B1	0.112	0.932	1.522	threading_2	MS-------DVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGLLVVTFTEAATAELR-----GRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQVVFETWKGPQAL------------LRDINRYLQGEAPVIK----APPPDIRDLVITRALAEIRETVAREKRRRG------ELGFDDDSALRSESGEVLAAAIRTIFRRHHQPETALLLIGYAFRGADIFTYMKARSEVHAHYTLDAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCQRGEALLMNGDDVRSRQEAAQVRDALTLLEIPSVYLSNRDRLESFITNFRVQEQAFYHDRHSFELNAAPESVDLAEAERLAEDLRDVHQSALGRLLQKGEP
3	SPARKS	1e9ra	0.170	0.718	1.915	threading_3	KAKQVTVAGVP-----MPRDAEPRHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDPNG--DMLSKFGRDKDII--------LNPYDQRTKGWSFFNEIRNDYDWQRYALSVVPRGKTDEAEEWASYGRLLLRETAKKLALIGTP--SMRELFHWTTIAFDDLRGFAESLFAGSNEASKALTSARFVLSDKPEHVTMPDGDFSIRSWLEDPNGG-----NLFITWREDMGPALRPLISAWVDVVCTSILSLPEEPKRRLWLFIDELASL------EKLASLADALTKGRKAGLRVVAGLQSTSQLDQTLRASFRSLVVLGGSRTDPKTNEDMSLSLHEVERDRALEMPAEIANLPDLTAYVGF--AGNRPIAKVPLEIRQPAFVEGT---------------------------------------------------------------------------------------------------------------
4	PROSPECT2	1e9ra	0.154	0.738	2.231	threading_4	VGQGEFGGAPFKRGVPMPRDAEPRHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDPNGDMLSKFGRDKD----------IILNPYDQRTKGWSFFNEIRNDYDWQRYALSVVPRGKTDEAEEWASYGRLLLRETAKKLALIGTP--SMRELFHWTTIATFDDLRGFESLFAGSNEASKALTSARFVLSDKLPEHVMPDGDFSIRSWLEDPNGGNLFITW-----REDMGPALRPLISAWVDVVCTSILSLPEEPKRRLWLFIDELASLEKLAS------LADALTKGRKAGLRVVAGLQSTSQLDDVYGVKEAQTLRLGGSRTDPKTNEDMSLSLGEHEVERDRALPAEIANLPDLTAYVGF--AGNRPIAKVPLEIKQFANRQPAFV----------------------------------------------------------------------------------------------------------EGT
5	PPA-I	1e9sF	0.151	0.730	1.477	threading_5	KAKQVTVAG-----VPMPRDAEPRHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDPNGDMLSKFGRDKD----------IILNPYDQRTKGWSFFNEIRNDYDWQRYALSVVPRGKTDEAEEWASYGRLLLRETAKKLALIGTPSMRTTIATFDDLRGFLEGTLAESLFAGSNEASKALTSARFVLSDKLPEHVTMPDGDFSIRSWLEDPNGGN-LFITWREDMGPALRPLISAWVDVVCTSILS----LPEEPKRRLWLFIDELASLEKLA------SLADALTKGRKAGLRVVAGLQSTSQLDQTLRASFRSLVVLGGSRTDPKTNEDMSLSLRYSKTGRALERPAEIANLPDLTAYVGF---AGNRPIAKVPLEIKQFANRQPAFVEG----------------------------------------------------------------------------------------------------------
6	HHPRED-l	1e9r_A	0.151	0.714	3.471	threading_6	KAKQVTVA-----GVPMPRDAEPRHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDPNGDMLSKFGRDKDI--I--------LNPYDQ---RTKGWSFFNEIRNDYDW--QRYALSVVPRAEEWASYGRLLLRETAKKLALIGT--PSMRELFHWTTIADDLRGTLAESLFAGSNEASKALTSARFVLSDKLPEVTMPDGDFSIRSWLEDP---NGGNLFITWREDM--GPALRPLISAWVDVVCTSILSLPEEPKRRLWLFIDELASLEKL------ASLADALTKGRKAGLRVVAGLQSTSQLDQTLRASFRSLVVLGGSRTDPKTNEDMSLSLGE-ALERVV-MPAEIANLPDLTAYVGFAG--NRP--IAKVPLEI-KQ-FANR--------------QPAFVEGT----------------------------------------------------------------------------------------
7	HHPRED-g	1e9r_A	0.160	0.700	4.201	threading_7	KAKQVTVA-----GVPMPRDAEPRHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDPNGDMLSKFGR-------------DKDIILNPYDQRTKGWSFFNEIRNDYDWQ------RYALSVVPRGSYGRLLLRETAKKLALIGTTIATFDDLRGFLE---GTLAE---SLFAGSNEASKALTSARFVLSDKPEHVTMPDGDFSIRSWLEDPNGGN-LFITWREDMGPALRPLISAWVDVVCTSILS----LPEEPKRRLWLFIDELASLEKL------ASLADALTKGRKAGLRVVAGLQSTSQLDQTLRASFRSLVVLGGSRTDPKTNEDMSLSLGERVRER-VVMPAEIANLPDLTAYVGFAG--NRP--IAKVPL-EIK-QFAN----RQPAFVEGT--------------------------------------------------------------------------------------------------
8	SP3	1e9ra	0.151	0.740	1.451	threading_8	IVSGGKLEKAKQVGVPMPRDAEPRHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDPNGDMLSKF--GRDKDII--------LNPYDQRTKGWSFFNEIRNDYDWQRYALSVVPRGKTDEAEEWASYGRLLLRETAKKLALIGTPSM-RELFHWTTIATFDDLRGFAESLFAGSNEASKALTSARFVLSDLPEHVTMPDGDFSIRSWLEDPNGG-----NLFITWREDMGPALRPLISAWVDVVCTSILSLPEEPKRRLWLFIDELASLEK------LASLADALTKGRKAGLRVVAGLQSTSQLDQTLRASFRSLVVLGGSRTDPKTNEDMSLSLHEVERDRALEMPAEIANLPDLTAYVGF---AGNRPIAKVPL---------------------------EIKQ--FANRQPAFVEGT----------------------------------------------------------------------------
9	SAM-T99	2iutA	0.191	0.482	2.179	threading_9	LPPLSLLDPA-GRPIITDLKM--PHLLVAGTTGSGKSVGVNAMLLSILFKSTPLIMIDPK---------------MLELSIYEGI-PHL------------------------------------------------------LCPVVTDMKEAANALRWSVAEMERRYRLMAAMGVRNLAGFNRKVKDAEEAG---------TPLTDPLFR-------------RESPDDPQL---------------------STLPTIVVVVDE----FADVGKKVEELIARIAQKARAAGIHLILATQRPSVITGLIKANIPTRIAFQVS--SKIDSRTILDQG-----GAEQLL-------GHGDMLYLPPGT-GLPIRVH----------------------------------------------------------------------------------------------------------------------------
10	MUSTER	2vvmA	0.106	0.870	0.723	threading_10	MTDGYQWTPETGLTQGVPSLGVIWDVIVIGG-G----YCGLTATRDLTVAGFKTLLLEARGYPYEMGGTHWHQSHVWREITRYKMHNA-------LSPSFNFSRGVNHFQLRTNPTTSTYMTHEAEDELLRSALHKFTNVDGTNGRTVLDMFYVPEFRKYDEMSYSERIDQIRDELSLNERSSLEAFILLCSGG-----TLENSSFGEFLHWWAMGYTYQGCMDCLMSYKFKDGQSAFARRFWEEAAGT----------RLGYVFGCPRSVVNER-----DAARVTARDGREFVAKRVVCTI-PLNVLSTILSTERISAMQAGHVSM-----CTKVHAEVDNKDMRSWTGIAYPFNKLCYAIGDGTTPAGNTHLVCFG-----NSANHIQPDEDVRETLKA--VGQLAPGTFGVK---RLVFHNWVKDEFAKGAWFF--SRPGMVSECLQGLREKHGGWALGWRSFIDGAIEEGTRAARVVLEEL---------------

Predicted Tertiary Structure


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TM-score=0.770 to 1e9sF SCOP code=c.37.1.11	TM-score=0.573 to 1w36E SCOP code=c.37.1.19	TM-score=0.782 to 1e9sF SCOP code=c.37.1.11	TM-score=0.753 to 1e9sF SCOP code=c.37.1.11	TM-score=0.756 to 1e9sF SCOP code=c.37.1.11